TCONS_00073043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073043
Unique NameTCONS_00073043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073043 ID=TCONS_00073043|Name=TCONS_00073043|organism=Clytia hemisphaerica|type=transcript|length=1710bp
AAACCGCTACAATATCGCGTGTACGGATTCTTAGATAACCAGCTAAACGT
ATACGTATTTTACCACAAAAGTTGCGGAATATTATCTTTCCTCAAATAAA
ACTCTATCATAAATATAATCTACAAGGTTATATAAAATATATGATGACat
caaaagtcactttttaCTACTATGTACATGGTATATAACACGTTAAATCA
AGTTAAAAGATCGTCAACTAACATTGTTCGAACAAGTTCTGCTTTGTAAT
TGGGAAGCCCATCCCTTTGAATCTTGTTAAGTCTTAGAAAGTTTCTCCCT
TAAGTTTAATTGAAAGTCTTAACTGTCATTTACAAGGTTCGTTAATCTAA
AGCAATAAGCCTTCCTTGATAATTCCATCGTAAACCTGTTTTGCGATTAA
TTTTCGGTCGCTCATTTCTTCAAGTTTGTTCGATTTTACTTCCTCGTCTC
CGTTGATTTTGGCGTTCAAATGAGAATCGTTCCTCAGGTCATTACGCTCT
CGAACGCATCCTTCCAACACGGAATGAGGGATGTTATGTTTCTTCATACA
TTGGAGTAATGCGTTAGTATCCTTTGGAAAGCATGCACCACCATAGCTTA
GTTTACCATCATGGCCGGGAACTGCAGTATGCATTGGGTTGATCCATTTA
TTCTTGATCATAAGCTCTTTGACAATATTGAAATTAGCTCCTTGTTTGTT
GCACAGCAAGTACAGCTCATTGAAGAATTGGATTTTGACTGAGTAAAAGG
TATTGACAAAGGACTTCATTGATTCTGATTCCAGTGAACGGCAGATTGAT
ATTTCAGCTTCTTTGAAGTATCGGCGATAGAAATCATGAAGATATTGGAG
TTGATCGTTATTGCAGTTGATTCCTTGTCCAATCACAATATGGTCTTGAT
TCTTGAAATCATCAAAGGCTGTGGCAGCTGATAGAAATTCTGGGTTATGC
ATGATTGACAGCTTTGGGAATCTTCTGGACATTGCATCAGTGGTACCAGG
TTCGACTGTACTTTTGATAACCACAATTCCTTTATATTGATGATTATGAA
GGTTATGCAGTGTATCCACTATGGCAGATTTGTTGTATTCGCGAGCATCA
TGATCGTAAAGTGTCGGCAAACACAAGAAGATGATTGGACATTGCATACA
CTCTTCCAAGGAGCCGATACCACCATCCTTGTATTTGTCGTATTTTCCAA
GAGGGTTGACTCCCATCATTTGGAAACATTTCACCATTGCTCCACCAACG
AAACCACATCCAATTATAGCTGCCATCTTTGGTGAATCTcaagtcaccaa
aatttctgCTGgttatttgaataaaaatttgactGTCGTGTTGATTCTGC
GTTTTCTTGAACACTGGAATCTCCAAGGCTCTGTTGCTTTTTAATATTCT
GGTTgttgaagaaaatcaaaatatccAAGAATCAAAGTCTGCAAATTTGG
ATGACCAAGATATTTGATCAAAGCtgaatttctattattttgcTAAATGT
AGATCACGTTAGCTCACTTCCGTTTATTTCGTTGGCAGGCTTTGATTTGC
TTTGATTCATCCTAAGATGGGACAGTCCAATTTATAGGACTATCAATCCT
TGAGGTTTTGGTAAAATTTCGTAATATcgttttaatttgattttcctTAC
TCCCGTTATTTTTCTGTTAGTATGTAATTGAGGGCTACTCGTTAACCATT
GGAGTTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_86:885491..887276-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073043 ID=TCONS_00073043|Name=TCONS_00073043|organism=Clytia hemisphaerica|type=transcript|length=1786bp|location=Sequence derived from alignment at scaffold_86:885491..887276- (Clytia hemisphaerica)
AAACCGCTACAATATCGCGTGTACGGATTCTTAGATAACCAGCTAAACGT ATACGTATTTTACCACAAAAGTTGCGGAATATTATCTTTCCTCAAATAAA ACTCTATCATAAATATAATCTACAAGGTTATATAAAATATATGATGACAT CAAAAGTCACTTTTTACTACTATGTACATGGTATATAACACGTTAAATCA AGTTAAAAGATCGTCAACTAACATTGTTCGAACAAGTTCTGCTTTGTAAT TGGGAAGCCCATCCCTTTGAATCTTGTTAAGTCTTAGAAAGTTTCTCCCT TAAGTTTAATTGAAAGTCTTAACTGTCATTTACAAGGTTCGTTAATCTAA AGCAATAAGCCTTCCTTGATAATTCCATCGTAAACCTGTTTTGCGATTAA TTTTCGGTCGCTCATTTCTTCAAGTTTGTTCGATTTTACTTCCTCGTCTC CGTTGATTTTGGCGTTCAAATGAGAATCGTTCCTCAGGTCATTACGCTCT CGAACGCATCCTTCCAACACGGAATGAGGGATGTTATGTTTCTTCATACA TTGGAGTAATGCGTTAGTATCCTTTGGAAAGCATGCACCACCGTAGCTTA GTTTACCATCATGGCCGGGGACTGCAGTATGCATTGGGTTGATCCATTTA TTNGAAACATGCACCACCATAGCTTAGTTTACCATCATGGCCGGGAACTG CAGTATGCATTGGGTTGATCCATTTATTCTTGATCATAAGCTCTTTGACA ATATTGAAATTAGCTCCTTGTTTGTTGCACAGCAAGTACAGCTCATTGAA GAATTGGATTTTGACTGAGTAAAAGGTATTGACAAAGGACTTCATTGATT CTGATTCCAGTGAACGGCAGATTGATATTTCAGCTTCTTTGAAGTATCGG CGATAGAAATCATGAAGATATTGGAGTTGATCGTTATTGCAGTTGATTCC TTGTCCAATCACAATATGGTCTTGATTCTTGAAATCATCAAAGGCTGTGG CAGCTGATAGAAATTCTGGGTTATGCATGATTGACAGCTTTGGGAATCTT CTGGACATTGCATCAGTGGTACCAGGTTCGACTGTACTTTTGATAACCAC AATTCCTTTATATTGATGATTATGAAGGTTATGCAGTGTATCCACTATGG CAGATTTGTTGTATTCGCGAGCATCATGATCGTAAAGTGTCGGCAAACAC AAGAAGATGATTGGACATTGCATACACTCTTCCAAGGAGCCGATACCACC ATCCTTGTATTTGTCGTATTTTCCAAGAGGGTTGACTCCCATCATTTGGA AACATTTCACCATTGCTCCACCAACGAAACCACATCCAATTATAGCTGCC ATCTTTGGTGAATCTCAAGTCACCAAAATTTCTGCTGGTTATTTGAATAA AAATTTGACTGTCGTGTTGATTCTGCGTTTTCTTGAACACTGGAATCTCC AAGGCTCTGTTGCTTTTTAATATTCTGGTTGTTGAAGAAAATCAAAATAT CCAAGAATCAAAGTCTGCAAATTTGGATGACCAAGATATTTGATCAAAGC TGAATTTCTATTATTTTGCTAAATGTAGATCACGTTAGCTCACTTCCGTT TATTTCGTTGGCAGGCTTTGATTTGCTTTGATTCATCCTAAGATGGGACA GTCCAATTTATAGGACTATCAATCCTTGAGGTTTTGGTAAAATTTCGTAA TATCGTTTTAATTTGATTTTCCTTACTCCCGTTATTTTTCTGTTAGTATG TAATTGAGGGCTACTCGTTAACCATTGGAGTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045289XLOC_045289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073043-exon-scaffold_86-1575043694:886695..887276TCONS_00073043-exon-scaffold_86-1575043694:886695..887276Clytia hemisphaericaexon
TCONS_00073043-exon-scaffold_86-1575043694:885491..886618TCONS_00073043-exon-scaffold_86-1575043694:885491..886618Clytia hemisphaericaexon
TCONS_00073043-exon-scaffold_86-1510915933:886695..887276TCONS_00073043-exon-scaffold_86-1510915933:886695..887276Clytia hemisphaericaexon
TCONS_00073043-exon-scaffold_86-1510915933:885491..886618TCONS_00073043-exon-scaffold_86-1510915933:885491..886618Clytia hemisphaericaexon
TCONS_00073043-exon-scaffold_86-1491911889:886695..887276TCONS_00073043-exon-scaffold_86-1491911889:886695..887276Clytia hemisphaericaexon
TCONS_00073043-exon-scaffold_86-1491911889:885491..886618TCONS_00073043-exon-scaffold_86-1491911889:885491..886618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:885491..887276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.0471588 0.0326499 0.0134213 0.115225 233.647 708.82 0 0.0788766 49.4075 48.9231 0.0542013 0.123192 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001732UDP-Glc/GDP-Man_DH_N
IPR014026UDP-Glc/GDP-Man_DH_dimer
IPR0133286PGD_dom_2
IPR0089276-PGluconate_DH_C-like
IPR016040NAD(P)-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0051287NAD binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0051287 NAD binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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