TCONS_00073042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073042
Unique NameTCONS_00073042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073042 ID=TCONS_00073042|Name=TCONS_00073042|organism=Clytia hemisphaerica|type=transcript|length=1837bp
CATATTAGCTGAtatatattttccaattttttcatatttcaaaataataa
gATCTTTGATGAAAGTATTATATTCAACAATAAGAAAACACATCATCATC
ATCGAATTTGGGATGGGAATAAAACAGTTAcaacaaacaaaatatttctg
AGATTGAAAACAGGAAGTATATAATTGCGCATTTGGatcaaaattgtttg
aataaaCAATTTGGTGAATCAAGTAGTTTCTCGAAGTGGACTCGGTATTG
ATTGATCAGATTTTCATATTAGTGAGTTGTCACCTACGATTATATTATAT
CAAATAAAAAGTGGACCCATTCAAGACGTTGATTGACGTCTCGTTGAGCG
ACGTCTATTCTGCATGTTTACTACCGTTTACCATCCAGATAACGTCATAC
AAATCGTCGCCAATTAGTTTTATTGGTTAAAACTATTGTCATATTAGACT
TTGGATAAAGGAAGATTTCCAAGGGCGCAATTTTAGTATCTATCCCGTTC
GAACTGCAAAAATGATCATTGAAGACATTaaagaagtcaaaaagaatATA
AAGGATGAAATCTATAACAGTTTAAAGAAATATTGCAAGTACAATTTGAT
ACTCTGGGCAGTCATATGTCTTGGtagtataatatttttttatatagagG
AGTGTCATTACTTCACACCCAATAAAGATTCCAGCGACCAATGTTCAAGT
CAAAAGCTTTGTAATGATATATTGGGAATGAACTCAACACATTCGAACAA
TTCTGATATTATGAAAGCTATCTCCAATTTAACAGCAATTTGCagtcaac
aacaaaaaaacaacgAGGTTGCCACACCCTCTTTTGCTCCTGCTTCGAAA
AATTGCTATTTGGACTCTGTTTACTTTGCAAAGTGGTTGTCATATATGGT
CACTGTTGTTTTTACCATTGGATTTGGAATCATTGTGCCAAAATCAACAC
CAGGAAGAGCATTGACGATTCTGTTTGCTCTTTGTGGAATCCCTATAGCC
ACAGTGACTACAATGGCATGTGGTAAAACTATTGATGGTTGTATCAAATA
CTTAATCATAggttttgaggaaaaaatattgaagcgAAAACAAATTGTTT
GGTTTAAACGGAAAGTTGCACTTGTGGAAGTCTCAACAACAATGACTTTA
ATCTTGTTATCTGCCTTATACAAAAAGACGGAAGGATTTCATAGAGAAAC
GTATTTTGATTGcgtttattatattttcattATGATGACCACGATTGGTT
TTGGTGATATGCAACCAGATCCTAAGCATAGGATCGAACGACTGGAAGAT
TCACATATTTCACTATTTATTGATGTTCTGTTTGATATATTTTTGTTCAT
TGTAACCTTTTCCATGATGGCAGCGTTCATAAGTGCTTTGACTTCAGTCG
GGGATGAAGACAGTGAGGGAAAGAAAACAGAGGAAGCAAAAACGAAGAAA
ACAAAACCGATACCGAAACCGGTCTCTAAAATAGACCATGAAGAAGTAGA
TCCCAATTTAATtgctatcaaaaatcttttgatttaagatttttggaTAA
ATGGTATCCCATTGGACGAAGTACGAACGATTTTACGAATCAGGAGACGA
CTTCCAATACCTATTGCTATTGCAATACAATAAGACGTGCACGAAATTTC
AATTAATAAGTGATATAGCGCACCAGTGATTTGATTTTCGTTGGAttaac
aacgttgtgtgccatttGGCGAGGAATAGCACGATGACCATTATATAAGA
AGAATAATATGCTTTTTTTTATTAACACTACATACCCATTGTGTCTATTT
GTAGTTATTACGACGTATTGAGGGGAGTCCTTTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00073042-protein

>TCONS_00073042-protein ID=TCONS_00073042-protein|Name=TCONS_00073042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MIIEDIKEVKKNIKDEIYNSLKKYCKYNLILWAVICLGSIIFFYIEECHY
FTPNKDSSDQCSSQKLCNDILGMNSTHSNNSDIMKAISNLTAICSQQQKN
NEVATPSFAPASKNCYLDSVYFAKWLSYMVTVVFTIGFGIIVPKSTPGRA
LTILFALCGIPIATVTTMACGKTIDGCIKYLIIGFEEKILKRKQIVWFKR
KVALVEVSTTMTLILLSALYKKTEGFHRETYFDCVYYIFIMMTTIGFGDM
QPDPKHRIERLEDSHISLFIDVLFDIFLFIVTFSMMAAFISALTSVGDED
SEGKKTEEAKTKKTKPIPKPVSKIDHEEVDPNLIAIKNLLI
Run BLAST on NCBI

transcript from alignment at scaffold_86:873715..876154-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073042 ID=TCONS_00073042|Name=TCONS_00073042|organism=Clytia hemisphaerica|type=transcript|length=2440bp|location=Sequence derived from alignment at scaffold_86:873715..876154- (Clytia hemisphaerica)
CATATTAGCTGATATATATTTTCCAATTTTTTCATATTTCAAAATAATAA GATCTTTGATGAAAGTATTATATTCAACAATAAGAAAACACATCATCATC ATCGAATTTGGGATGGGAATAAAACAGTTACAACAAACAAAATATTTCTG AGATTGAAAACAGGAAGTATATAATTGCGCATTTGGATCAAAATTGTTTG AATAAACAATTTGGTGAATCAAGTAGTTTCTCGAAGTGGACTCGGTATTG ATTGATCAGATTTTCATATTAGTGAGTTGTCACCTACGATTATATTATAT CAAATAAAAAGTGGACCCATTCAAGACGTTGATTGACGTCTCGTTGAGCG ACGTCTATTCTGCATGTTTACTACCGTTTACCATCCAGATAACGTCATAC AAATCGTCGCCAATTAGTTTTATTGGTTAAAACTATTGTCATATTAGACT TTGGATAAAGGAAGATTTCCAAGGGCGCAATTTTAGTATCTATCCCGTTC GAACTGCAAAAATGATCATTGAAGACATTAAAGAAGTCAAAAAGAATATA AAGGATGAAATCTATAACAGTTTAAAGAAATATTGCAAGTACAATTTGAT ACTCTGGGCAGTCATATGTCTTGGTAGTATAATATTTTTTTATATAGAGG AGTGTCATTACTTCACACCCAATAAAGATTCCAGCGACCAATGTTCAAGT CAAAAGCTTTGTAATGATATATTGGGAATGAACTCAACACATTCGAACAA TTCTGATATTATGAAAGCTATCTCCAATTTAACAGCAATTTGCAGTCAAC AACAAAAAAACAACGAGGTTGCCACACCCTCTTTTGCTCCTGCTTCGAAA AATTGCTATTTGGACTCTGTTTACTTTGCAAAGTGGTTGTCATATATGGT CACTGTTGTTTTTACCATTGGTAAGGCCTATGTTTTTTATCTTCATTTTA GTTTATTGCTTGGGAATATCGTAACATCCTACTTTGGACCAATACTAAAT TATTCTTTCTTCTAGAACACCTTGACTTTCCAGCTGGCACACAACGCTGT TTCAACGTTTATTCAATGTTCACAACGTCCATATAACGTTAAAATAACGT CGTGTACCAGCTGGGTTGTTCTAGATTGTCTGTTCACATTCTTCATCGCA GTGATTTTTCTGCTTTGGGTTTTTTCCATAACTCTGAAAATCTGAAAAAC TTTAGTGTGTTAAAAGTTTTTTTTTTATTTCCCGAATAACCATAAACAAA CCTTGCTTCAGGATTGCTGCTGCGAAGGATAATATAAAAGCTTTGAGTCT GAGTATCTTTTGTCAACGCCTAACGTTATAAATGATACTTGACACCTCTC TGCTTCATTCTCGGCGACCAAAAAAAATGAAAAAAGGGTAAGTAAAGAAT ATCAAAAAGTGGAAAAATCAAGGGGAAGGAGTGTTACTCTCCTCAAGGCA GTTAAGGAAAAGAGAGCTTTCCGGTCGCCATCTACTGCAGTCACAATGTT CATTTTTCATTCTTTCATTCTAGGATTTGGAATCATTGTGCCAAAATCAA CACCAGGAAGAGCATTGACGATTCTGTTTGCTCTTTGTGGAATCCCTATA GCCACAGTGACTACAATGGCATGTGGTAAAACTATTGATGGTTGTATCAA ATACTTAATCATAGGTTTTGAGGAAAAAATATTGAAGCGAAAACAAATTG TTTGGTTTAAACGGAAAGTTGCACTTGTGGAAGTCTCAACAACAATGACT TTAATCTTGTTATCTGCCTTATACAAAAAGACGGAAGGATTTCATAGAGA AACGTATTTTGATTGCGTTTATTATATTTTCATTATGATGACCACGATTG GTTTTGGTGATATGCAACCAGATCCTAAGCATAGGATCGAACGACTGGAA GATTCACATATTTCACTATTTATTGATGTTCTGTTTGATATATTTTTGTT CATTGTAACCTTTTCCATGATGGCAGCGTTCATAAGTGCTTTGACTTCAG TCGGGGATGAAGACAGTGAGGGAAAGAAAACAGAGGAAGCAAAAACGAAG AAAACAAAACCGATACCGAAACCGGTCTCTAAAATAGACCATGAAGAAGT AGATCCCAATTTAATTGCTATCAAAAATCTTTTGATTTAAGATTTTTGGA TAAATGGTATCCCATTGGACGAAGTACGAACGATTTTACGAATCAGGAGA CGACTTCCAATACCTATTGCTATTGCAATACAATAAGACGTGCACGAAAT TTCAATTAATAAGTGATATAGCGCACCAGTGATTTGATTTTCGTTGGATT AACAACGTTGTGTGCCATTTGGCGAGGAATAGCACGATGACCATTATATA AGAAGAATAATATGCTTTTTTTTATTAACACTACATACCCATTGTGTCTA TTTGTAGTTATTACGACGTATTGAGGGGAGTCCTTTGAAT

Coding sequence (CDS) from alignment at scaffold_86:873715..876154-

>TCONS_00073042 ID=TCONS_00073042|Name=TCONS_00073042|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_86:873715..876154- (Clytia hemisphaerica)
GATTTGGAATCATTGTGCCAAAATCAACACCAGGAAGAGCATTGACGATT
CTGTTTGCTCTTTGTGGAATCCCTATAGCCACAGTGACTACAATGGCATG
TGGTAAAACTATTGATGGTTGTATCAAATACTTAATCATAGGTTTTGAGG
AAAAAATATTGAAGCGAAAACAAATTGTTTGGTTTAAACGGAAAGTTGCA
CTTGTGGAAGTCTCAACAACAATGACTTTAATCTTGTTATCTGCCTTATA
CAAAAAGACGGAAGGATTTCATAGAGAAACGTATTTTGATTGCGTTTATT
ATATTTTCATTATGATGACCACGATTGGTTTTGGTGATATGCAACCAGAT
CCTAAGCATAGGATCGAACGACTGGAAGATTCACATATTTCACTATTTAT
TGATGTTCTGTTTGATATATTTTTGTTCATTGTAACCTTTTCCATGATGG
CAGCGTTCATAAGTGCTTTGACTTCAGTCGGGGATGAAGACAGTGAGGGA
AAGAAAACAGAGGAAGCAAAAACGAAGAAAACAAAACCGATACCGAAACC
GGTCTCTAAAATAGACCATGAAGAAGTAGATCCCAATTTAATTGCTATCA
AAAATCTTTTGATTTAAATGATCATTGAAGACATTAAAGAAGTCAAAAAG
AATATAAAGGATGAAATCTATAACAGTTTAAAGAAATATTGCAAGTACAA
TTTGATACTCTGGGCAGTCATATGTCTTGGTAGTATAATATTTTTTTATA
TAGAGGAGTGTCATTACTTCACACCCAATAAAGATTCCAGCGACCAATGT
TCAAGTCAAAAGCTTTGTAATGATATATTGGGAATGAACTCAACACATTC
GAACAATTCTGATATTATGAAAGCTATCTCCAATTTAACAGCAATTTGCA
GTCAACAACAAAAAAACAACGAGGTTGCCACACCCTCTTTTGCTCCTGCT
TCGAAAAATTGCTATTTGGACTCTGTTTACTTTGCAAAGTGGTTGTCATA
TATGGTCACTGTTGTTTTTACCATTGGATTTGGAATCATTGTGCCAAAAT
CAACACCAGGAAGAGCATTGACGATTCTGTTTGCTCTTTGTGGAATCCCT
ATAGCCACAGTGACTACAATGGCATGTGGTAAAACTATTGATGGTTGTAT
CAAATACTTAATCATAGGTTTTGAGGAAAAAATATTGAAGCGAAAACAAA
TTGTTTGGTTTAAACGGAAAGTTGCACTTGTGGAAGTCTCAACAACAATG
ACTTTAATCTTGTTATCTGCCTTATACAAAAAGACGGAAGGATTTCATAG
AGAAACGTATTTTGATTGCGTTTATTATATTTTCATTATGATGACCACGA
TTGGTTTTGGTGATATGCAACCAGATCCTAAGCATAGGATCGAACGACTG
GAAGATTCACATATTTCACTATTTATTGATGTTCTGTTTGATATATTTTT
GTTCATTGTAACCTTTTCCATGATGGCAGCGTTCATAAGTGCTTTGACTT
CAGTCGGGGATGAAGACAGTGAGGGAAAGAAAACAGAGGAAGCAAAAACG
AAGAAAACAAAACCGATACCGAAACCGGTCTCTAAAATAGACCATGAAGA
AGTAGATCCCAATTTAATTGCTATCAAAAATCTTTTGATTTAAATGATCA
TTGAAGACATTAAAGAAGTCAAAAAGAATATAAAGGATGAAATCTATAAC
AGTTTAAAGAAATATTGCAAGTACAATTTGATACTCTGGGCAGTCATATG
TCTTGGTAGTATAATATTTTTTTATATAGAGGAGTGTCATTACTTCACAC
CCAATAAAGATTCCAGCGACCAATGTTCAAGTCAAAAGCTTTGTAATGAT
ATATTGGGAATGAACTCAACACATTCGAACAATTCTGATATTATGAAAGC
TATCTCCAATTTAACAGCAATTTGCAGTCAACAACAAAAAAACAACGAGG
TTGCCACACCCTCTTTTGCTCCTGCTTCGAAAAATTGCTATTTGGACTCT
GTTTACTTTGCAAAGTGGTTGTCATATATGGTCACTGTTGTTTTTACCAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045288XLOC_045288Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073042-proteinTCONS_00073042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073042-exon-scaffold_86-1575043694:875235..876154TCONS_00073042-exon-scaffold_86-1575043694:875235..876154Clytia hemisphaericaexon
TCONS_00073042-exon-scaffold_86-1575043694:873715..874631TCONS_00073042-exon-scaffold_86-1575043694:873715..874631Clytia hemisphaericaexon
TCONS_00073042-exon-scaffold_86-1510915933:875235..876154TCONS_00073042-exon-scaffold_86-1510915933:875235..876154Clytia hemisphaericaexon
TCONS_00073042-exon-scaffold_86-1510915933:873715..874631TCONS_00073042-exon-scaffold_86-1510915933:873715..874631Clytia hemisphaericaexon
TCONS_00073042-exon-scaffold_86-1491911889:875235..876154TCONS_00073042-exon-scaffold_86-1491911889:875235..876154Clytia hemisphaericaexon
TCONS_00073042-exon-scaffold_86-1491911889:873715..874631TCONS_00073042-exon-scaffold_86-1491911889:873715..874631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:873715..876154 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.0232228 2.7457 2.70164 5.65608 4.18538 2.29616 5.19583 2.55083 2.30287 0.457851 0.690538 0.73617 1.02284 4.74895 3.7089 2.38091 2.18904 0.674636 1.29483 1.56762 2.00463 0.179289 0.0318903 0 0.0246434
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0032802pore_dom_K_chnl
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071805 potassium ion transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005267 potassium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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