|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073042 ID=TCONS_00073042|Name=TCONS_00073042|organism=Clytia hemisphaerica|type=transcript|length=1837bp
CATATTAGCTGAtatatattttccaattttttcatatttcaaaataataa
gATCTTTGATGAAAGTATTATATTCAACAATAAGAAAACACATCATCATC
ATCGAATTTGGGATGGGAATAAAACAGTTAcaacaaacaaaatatttctg
AGATTGAAAACAGGAAGTATATAATTGCGCATTTGGatcaaaattgtttg
aataaaCAATTTGGTGAATCAAGTAGTTTCTCGAAGTGGACTCGGTATTG
ATTGATCAGATTTTCATATTAGTGAGTTGTCACCTACGATTATATTATAT
CAAATAAAAAGTGGACCCATTCAAGACGTTGATTGACGTCTCGTTGAGCG
ACGTCTATTCTGCATGTTTACTACCGTTTACCATCCAGATAACGTCATAC
AAATCGTCGCCAATTAGTTTTATTGGTTAAAACTATTGTCATATTAGACT
TTGGATAAAGGAAGATTTCCAAGGGCGCAATTTTAGTATCTATCCCGTTC
GAACTGCAAAAATGATCATTGAAGACATTaaagaagtcaaaaagaatATA
AAGGATGAAATCTATAACAGTTTAAAGAAATATTGCAAGTACAATTTGAT
ACTCTGGGCAGTCATATGTCTTGGtagtataatatttttttatatagagG
AGTGTCATTACTTCACACCCAATAAAGATTCCAGCGACCAATGTTCAAGT
CAAAAGCTTTGTAATGATATATTGGGAATGAACTCAACACATTCGAACAA
TTCTGATATTATGAAAGCTATCTCCAATTTAACAGCAATTTGCagtcaac
aacaaaaaaacaacgAGGTTGCCACACCCTCTTTTGCTCCTGCTTCGAAA
AATTGCTATTTGGACTCTGTTTACTTTGCAAAGTGGTTGTCATATATGGT
CACTGTTGTTTTTACCATTGGATTTGGAATCATTGTGCCAAAATCAACAC
CAGGAAGAGCATTGACGATTCTGTTTGCTCTTTGTGGAATCCCTATAGCC
ACAGTGACTACAATGGCATGTGGTAAAACTATTGATGGTTGTATCAAATA
CTTAATCATAggttttgaggaaaaaatattgaagcgAAAACAAATTGTTT
GGTTTAAACGGAAAGTTGCACTTGTGGAAGTCTCAACAACAATGACTTTA
ATCTTGTTATCTGCCTTATACAAAAAGACGGAAGGATTTCATAGAGAAAC
GTATTTTGATTGcgtttattatattttcattATGATGACCACGATTGGTT
TTGGTGATATGCAACCAGATCCTAAGCATAGGATCGAACGACTGGAAGAT
TCACATATTTCACTATTTATTGATGTTCTGTTTGATATATTTTTGTTCAT
TGTAACCTTTTCCATGATGGCAGCGTTCATAAGTGCTTTGACTTCAGTCG
GGGATGAAGACAGTGAGGGAAAGAAAACAGAGGAAGCAAAAACGAAGAAA
ACAAAACCGATACCGAAACCGGTCTCTAAAATAGACCATGAAGAAGTAGA
TCCCAATTTAATtgctatcaaaaatcttttgatttaagatttttggaTAA
ATGGTATCCCATTGGACGAAGTACGAACGATTTTACGAATCAGGAGACGA
CTTCCAATACCTATTGCTATTGCAATACAATAAGACGTGCACGAAATTTC
AATTAATAAGTGATATAGCGCACCAGTGATTTGATTTTCGTTGGAttaac
aacgttgtgtgccatttGGCGAGGAATAGCACGATGACCATTATATAAGA
AGAATAATATGCTTTTTTTTATTAACACTACATACCCATTGTGTCTATTT
GTAGTTATTACGACGTATTGAGGGGAGTCCTTTGAAT Run BLAST on NCBI protein sequence of TCONS_00073042-protein >TCONS_00073042-protein ID=TCONS_00073042-protein|Name=TCONS_00073042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MIIEDIKEVKKNIKDEIYNSLKKYCKYNLILWAVICLGSIIFFYIEECHY
FTPNKDSSDQCSSQKLCNDILGMNSTHSNNSDIMKAISNLTAICSQQQKN
NEVATPSFAPASKNCYLDSVYFAKWLSYMVTVVFTIGFGIIVPKSTPGRA
LTILFALCGIPIATVTTMACGKTIDGCIKYLIIGFEEKILKRKQIVWFKR
KVALVEVSTTMTLILLSALYKKTEGFHRETYFDCVYYIFIMMTTIGFGDM
QPDPKHRIERLEDSHISLFIDVLFDIFLFIVTFSMMAAFISALTSVGDED
SEGKKTEEAKTKKTKPIPKPVSKIDHEEVDPNLIAIKNLLI Run BLAST on NCBI transcript from alignment at scaffold_86:873715..876154- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073042 ID=TCONS_00073042|Name=TCONS_00073042|organism=Clytia hemisphaerica|type=transcript|length=2440bp|location=Sequence derived from alignment at scaffold_86:873715..876154- (Clytia hemisphaerica)
CATATTAGCTGATATATATTTTCCAATTTTTTCATATTTCAAAATAATAA
GATCTTTGATGAAAGTATTATATTCAACAATAAGAAAACACATCATCATC
ATCGAATTTGGGATGGGAATAAAACAGTTACAACAAACAAAATATTTCTG
AGATTGAAAACAGGAAGTATATAATTGCGCATTTGGATCAAAATTGTTTG
AATAAACAATTTGGTGAATCAAGTAGTTTCTCGAAGTGGACTCGGTATTG
ATTGATCAGATTTTCATATTAGTGAGTTGTCACCTACGATTATATTATAT
CAAATAAAAAGTGGACCCATTCAAGACGTTGATTGACGTCTCGTTGAGCG
ACGTCTATTCTGCATGTTTACTACCGTTTACCATCCAGATAACGTCATAC
AAATCGTCGCCAATTAGTTTTATTGGTTAAAACTATTGTCATATTAGACT
TTGGATAAAGGAAGATTTCCAAGGGCGCAATTTTAGTATCTATCCCGTTC
GAACTGCAAAAATGATCATTGAAGACATTAAAGAAGTCAAAAAGAATATA
AAGGATGAAATCTATAACAGTTTAAAGAAATATTGCAAGTACAATTTGAT
ACTCTGGGCAGTCATATGTCTTGGTAGTATAATATTTTTTTATATAGAGG
AGTGTCATTACTTCACACCCAATAAAGATTCCAGCGACCAATGTTCAAGT
CAAAAGCTTTGTAATGATATATTGGGAATGAACTCAACACATTCGAACAA
TTCTGATATTATGAAAGCTATCTCCAATTTAACAGCAATTTGCAGTCAAC
AACAAAAAAACAACGAGGTTGCCACACCCTCTTTTGCTCCTGCTTCGAAA
AATTGCTATTTGGACTCTGTTTACTTTGCAAAGTGGTTGTCATATATGGT
CACTGTTGTTTTTACCATTGGTAAGGCCTATGTTTTTTATCTTCATTTTA
GTTTATTGCTTGGGAATATCGTAACATCCTACTTTGGACCAATACTAAAT
TATTCTTTCTTCTAGAACACCTTGACTTTCCAGCTGGCACACAACGCTGT
TTCAACGTTTATTCAATGTTCACAACGTCCATATAACGTTAAAATAACGT
CGTGTACCAGCTGGGTTGTTCTAGATTGTCTGTTCACATTCTTCATCGCA
GTGATTTTTCTGCTTTGGGTTTTTTCCATAACTCTGAAAATCTGAAAAAC
TTTAGTGTGTTAAAAGTTTTTTTTTTATTTCCCGAATAACCATAAACAAA
CCTTGCTTCAGGATTGCTGCTGCGAAGGATAATATAAAAGCTTTGAGTCT
GAGTATCTTTTGTCAACGCCTAACGTTATAAATGATACTTGACACCTCTC
TGCTTCATTCTCGGCGACCAAAAAAAATGAAAAAAGGGTAAGTAAAGAAT
ATCAAAAAGTGGAAAAATCAAGGGGAAGGAGTGTTACTCTCCTCAAGGCA
GTTAAGGAAAAGAGAGCTTTCCGGTCGCCATCTACTGCAGTCACAATGTT
CATTTTTCATTCTTTCATTCTAGGATTTGGAATCATTGTGCCAAAATCAA
CACCAGGAAGAGCATTGACGATTCTGTTTGCTCTTTGTGGAATCCCTATA
GCCACAGTGACTACAATGGCATGTGGTAAAACTATTGATGGTTGTATCAA
ATACTTAATCATAGGTTTTGAGGAAAAAATATTGAAGCGAAAACAAATTG
TTTGGTTTAAACGGAAAGTTGCACTTGTGGAAGTCTCAACAACAATGACT
TTAATCTTGTTATCTGCCTTATACAAAAAGACGGAAGGATTTCATAGAGA
AACGTATTTTGATTGCGTTTATTATATTTTCATTATGATGACCACGATTG
GTTTTGGTGATATGCAACCAGATCCTAAGCATAGGATCGAACGACTGGAA
GATTCACATATTTCACTATTTATTGATGTTCTGTTTGATATATTTTTGTT
CATTGTAACCTTTTCCATGATGGCAGCGTTCATAAGTGCTTTGACTTCAG
TCGGGGATGAAGACAGTGAGGGAAAGAAAACAGAGGAAGCAAAAACGAAG
AAAACAAAACCGATACCGAAACCGGTCTCTAAAATAGACCATGAAGAAGT
AGATCCCAATTTAATTGCTATCAAAAATCTTTTGATTTAAGATTTTTGGA
TAAATGGTATCCCATTGGACGAAGTACGAACGATTTTACGAATCAGGAGA
CGACTTCCAATACCTATTGCTATTGCAATACAATAAGACGTGCACGAAAT
TTCAATTAATAAGTGATATAGCGCACCAGTGATTTGATTTTCGTTGGATT
AACAACGTTGTGTGCCATTTGGCGAGGAATAGCACGATGACCATTATATA
AGAAGAATAATATGCTTTTTTTTATTAACACTACATACCCATTGTGTCTA
TTTGTAGTTATTACGACGTATTGAGGGGAGTCCTTTGAAT Coding sequence (CDS) from alignment at scaffold_86:873715..876154- >TCONS_00073042 ID=TCONS_00073042|Name=TCONS_00073042|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_86:873715..876154- (Clytia hemisphaerica)
GATTTGGAATCATTGTGCCAAAATCAACACCAGGAAGAGCATTGACGATT
CTGTTTGCTCTTTGTGGAATCCCTATAGCCACAGTGACTACAATGGCATG
TGGTAAAACTATTGATGGTTGTATCAAATACTTAATCATAGGTTTTGAGG
AAAAAATATTGAAGCGAAAACAAATTGTTTGGTTTAAACGGAAAGTTGCA
CTTGTGGAAGTCTCAACAACAATGACTTTAATCTTGTTATCTGCCTTATA
CAAAAAGACGGAAGGATTTCATAGAGAAACGTATTTTGATTGCGTTTATT
ATATTTTCATTATGATGACCACGATTGGTTTTGGTGATATGCAACCAGAT
CCTAAGCATAGGATCGAACGACTGGAAGATTCACATATTTCACTATTTAT
TGATGTTCTGTTTGATATATTTTTGTTCATTGTAACCTTTTCCATGATGG
CAGCGTTCATAAGTGCTTTGACTTCAGTCGGGGATGAAGACAGTGAGGGA
AAGAAAACAGAGGAAGCAAAAACGAAGAAAACAAAACCGATACCGAAACC
GGTCTCTAAAATAGACCATGAAGAAGTAGATCCCAATTTAATTGCTATCA
AAAATCTTTTGATTTAAATGATCATTGAAGACATTAAAGAAGTCAAAAAG
AATATAAAGGATGAAATCTATAACAGTTTAAAGAAATATTGCAAGTACAA
TTTGATACTCTGGGCAGTCATATGTCTTGGTAGTATAATATTTTTTTATA
TAGAGGAGTGTCATTACTTCACACCCAATAAAGATTCCAGCGACCAATGT
TCAAGTCAAAAGCTTTGTAATGATATATTGGGAATGAACTCAACACATTC
GAACAATTCTGATATTATGAAAGCTATCTCCAATTTAACAGCAATTTGCA
GTCAACAACAAAAAAACAACGAGGTTGCCACACCCTCTTTTGCTCCTGCT
TCGAAAAATTGCTATTTGGACTCTGTTTACTTTGCAAAGTGGTTGTCATA
TATGGTCACTGTTGTTTTTACCATTGGATTTGGAATCATTGTGCCAAAAT
CAACACCAGGAAGAGCATTGACGATTCTGTTTGCTCTTTGTGGAATCCCT
ATAGCCACAGTGACTACAATGGCATGTGGTAAAACTATTGATGGTTGTAT
CAAATACTTAATCATAGGTTTTGAGGAAAAAATATTGAAGCGAAAACAAA
TTGTTTGGTTTAAACGGAAAGTTGCACTTGTGGAAGTCTCAACAACAATG
ACTTTAATCTTGTTATCTGCCTTATACAAAAAGACGGAAGGATTTCATAG
AGAAACGTATTTTGATTGCGTTTATTATATTTTCATTATGATGACCACGA
TTGGTTTTGGTGATATGCAACCAGATCCTAAGCATAGGATCGAACGACTG
GAAGATTCACATATTTCACTATTTATTGATGTTCTGTTTGATATATTTTT
GTTCATTGTAACCTTTTCCATGATGGCAGCGTTCATAAGTGCTTTGACTT
CAGTCGGGGATGAAGACAGTGAGGGAAAGAAAACAGAGGAAGCAAAAACG
AAGAAAACAAAACCGATACCGAAACCGGTCTCTAAAATAGACCATGAAGA
AGTAGATCCCAATTTAATTGCTATCAAAAATCTTTTGATTTAAATGATCA
TTGAAGACATTAAAGAAGTCAAAAAGAATATAAAGGATGAAATCTATAAC
AGTTTAAAGAAATATTGCAAGTACAATTTGATACTCTGGGCAGTCATATG
TCTTGGTAGTATAATATTTTTTTATATAGAGGAGTGTCATTACTTCACAC
CCAATAAAGATTCCAGCGACCAATGTTCAAGTCAAAAGCTTTGTAATGAT
ATATTGGGAATGAACTCAACACATTCGAACAATTCTGATATTATGAAAGC
TATCTCCAATTTAACAGCAATTTGCAGTCAACAACAAAAAAACAACGAGG
TTGCCACACCCTCTTTTGCTCCTGCTTCGAAAAATTGCTATTTGGACTCT
GTTTACTTTGCAAAGTGGTTGTCATATATGGTCACTGTTGTTTTTACCAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073042-exon-scaffold_86-1575043694:875235..876154 | TCONS_00073042-exon-scaffold_86-1575043694:875235..876154 | Clytia hemisphaerica | exon |
| TCONS_00073042-exon-scaffold_86-1575043694:873715..874631 | TCONS_00073042-exon-scaffold_86-1575043694:873715..874631 | Clytia hemisphaerica | exon |
| TCONS_00073042-exon-scaffold_86-1510915933:875235..876154 | TCONS_00073042-exon-scaffold_86-1510915933:875235..876154 | Clytia hemisphaerica | exon |
| TCONS_00073042-exon-scaffold_86-1510915933:873715..874631 | TCONS_00073042-exon-scaffold_86-1510915933:873715..874631 | Clytia hemisphaerica | exon |
| TCONS_00073042-exon-scaffold_86-1491911889:875235..876154 | TCONS_00073042-exon-scaffold_86-1491911889:875235..876154 | Clytia hemisphaerica | exon |
| TCONS_00073042-exon-scaffold_86-1491911889:873715..874631 | TCONS_00073042-exon-scaffold_86-1491911889:873715..874631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:873715..876154 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
|
