TCONS_00073041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073041
Unique NameTCONS_00073041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073041 ID=TCONS_00073041|Name=TCONS_00073041|organism=Clytia hemisphaerica|type=transcript|length=568bp
GAATCGGGAAAACAATGGAAGATCCGAACGGAATACGATCGGAACCAGCA
GATTCAGAAGATGTTGCTCTCACTGATCCATCATCGACAAGTAaaccaaa
aagttttttgagatcaaaatttggaattGTTTGGATTGTAAATACGATTC
TAATGATCTTATCATGGTGTATTATTGCTGGTTGGAGAGCAAAAGTTCCA
TCagaaattgaagatgaaattgaaagccaatctTTCTTCTTAGCAGTAAC
CATATTGGAAACTCTTTTTAATACTGCAAATATCATCATCTTTATAATAA
ATGCTCatgaaagtttattgaaaatgatCAACTGGGAAATCTTTCTAATC
ATCAGTACAGCCATTGAAGCTATATTGACCTTAACAGTAGCATGTGTATT
ACTGAGCGAAGTTGAAAACTTGGACATTCTTTGCGAATTTGTCAAATGTA
AATACTTGAGCTGGGGTGAGTATACATTTTTCATTTCCTGTAATACTATT
TTCTTAAATCGAGTTAAAGAAAGTCTAACACGATAATACCTACCAAAATC
GTGAACTAATTGTTTATC
Run BLAST on NCBI

protein sequence of TCONS_00073041-protein

>TCONS_00073041-protein ID=TCONS_00073041-protein|Name=TCONS_00073041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
IGKTMEDPNGIRSEPADSEDVALTDPSSTSKPKSFLRSKFGIVWIVNTIL
MILSWCIIAGWRAKVPSEIEDEIESQSFFLAVTILETLFNTANIIIFIIN
AHESLLKMINWEIFLIISTAIEAILTLTVACVLLSEVENLDILCEFVKCK
YLSWGEYTFFISCNTIFLNRVKESLTR
Run BLAST on NCBI

transcript from alignment at scaffold_86:871226..872949-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073041 ID=TCONS_00073041|Name=TCONS_00073041|organism=Clytia hemisphaerica|type=transcript|length=1724bp|location=Sequence derived from alignment at scaffold_86:871226..872949- (Clytia hemisphaerica)
GAATCGGGAAAACAATGGAAGATCCGAACGGAATACGATCGGAACCAGCA GATTCAGAAGATGTTGCTCTCACTGATCCATCATCGACAAGTAAACCAAA AAGTTTTTTGAGATCAAAATTTGGAATTGTTTGGATTGTAAATACGGTAT GTTTTTGGTTATGGTTTTATTTCTTTTGAAATTCACCCCTTTTTCACAGA CCTGGTAGGATTTTTTCGGCCAGTGGGGATGAAAATAATAGAATGAAACT CGATGGAGATCGATATTTCCATATTTTTTATGGCTGGGGATTTATATTCC ATTGTTTTCAAGTCGGAAAATTCAGTGGGGATGGGAAAAATAGCATTACA TTTGGCAGTGAGGATTGGTTTATTTGATTATTTTCAGTTGGGACAAAAAT TGGCGGATAATCTTCCACCGGCGACGATACTTTGGACAATTTCTCCAGTG TGAAGGGGTCCTAGTGGGTCTGTGAGAAGAGGGTGTTGAAATATGAACTT ACTGAGACTTTCCATTCACCCCTGTCTCACCTTGAAAAGGATTTTGAAGT CATGTGTTTTTTTCTACAGAGACTATGAAGGTCTAAAGGAAAATTCAACC AGTTTTTCTATCTGTTATGAGAAATGTTTTGTAATTTAAATTTTAAAGGA ATTTCGAAAAATACTCTCTATTTCCATGCTTTAAGTCGACTGCTAAACCC ATACAATACCAAGTACAGTACATCATATAATGTGTTAAAATCTTATGATG TCTTTAGATTCTAATGATCTTATCATGGTGTATTATTGCTGGTTGGAGAG CAAAAGTTCCATCAGAAATTGAAGATGAAATTGAAAGCCAATCTTTCTTC TTAGCAGTAACCATATTGGAAACTCTTTTTAATACTGCAAATATCATCAT CTTTATAATAAATGCTCATGAAAGTTTATTGAAAATGATCAACTGGGAAA TCTTTGTGAGTGTTATATACCCTACTGTCACTCTAGACACACCCCTACGT CTCAGACTCCTGGTGGAATCCAACTCAAAAAATCCTGCGGAGATGGTTTT GTGGAGTGCAACTTTTCATATTGAATTTCGAATGGGAATGAAATCAAAGT TAATTTCAAAAGTGTGGTCGTGTAGAAACTAGTCCACACTCTAATAGCCT TATTGAATTTCGACTGGAAAATGGAGCACTTAGACTTAGGATAAAATCCG TACAGATTTTCATAACATTCATAACTTTTTTTGAATTTCAAAGGCTCTCG AATTTCTAATTCCTACTTTTTAACCCTTTAAGAATTGTGAAAATTGATAT TTTTAACTTCGCATCAGAATACATAAAAAATCTAATTTATTTTAATTCCG TGTTTTATTTAAGTGGAATCATTCAAAAGTTGTAAGTACGTGGTTTCAAG GTTACAAGAATCATCATACTTTAAACCTAGAATTACAATGATTCAAACTC ACCTTTATCCAAACAATTAGTCTAACTGACACTATGCTTTGCCATTTCAG CTAATCATCAGTACAGCCATTGAAGCTATATTGACCTTAACAGTAGCATG TGTATTACTGAGCGAAGTTGAAAACTTGGACATTCTTTGCGAATTTGTCA AATGTAAATACTTGAGCTGGGGTGAGTATACATTTTTCATTTCCTGTAAT ACTATTTTCTTAAATCGAGTTAAAGAAAGTCTAACACGATAATACCTACC AAAATCGTGAACTAATTGTTTATC

Coding sequence (CDS) from alignment at scaffold_86:871226..872949-

>TCONS_00073041 ID=TCONS_00073041|Name=TCONS_00073041|organism=Clytia hemisphaerica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_86:871226..872949- (Clytia hemisphaerica)
CTAATCATCAGTACAGCCATTGAAGCTATATTGACCTTAACAGTAGCATG
TGTATTACTGAGCGAAGTTGAAAACTTGGACATTCTTTGCGAATTTGTCA
AATGTAAATACTTGAGCTGGGGTGAGTATACATTTTTCATTTCCTGTAAT
ACTATTTTCTTAAATCGAGTTAAAGAAAGTCTAACACGATAAATTCTAAT
GATCTTATCATGGTGTATTATTGCTGGTTGGAGAGCAAAAGTTCCATCAG
AAATTGAAGATGAAATTGAAAGCCAATCTTTCTTCTTAGCAGTAACCATA
TTGGAAACTCTTTTTAATACTGCAAATATCATCATCTTTATAATAAATGC
TCATGAAAGTTTATTGAAAATGATCAACTGGGAAATCTTTATCGGGAAAA
CAATGGAAGATCCGAACGGAATACGATCGGAACCAGCAGATTCAGAAGAT
GTTGCTCTCACTGATCCATCATCGACAAGTAAACCAAAAAGTTTTTTGAG
ATCAAAATTTGGAATTGTTTGGATTGTAAATACGCTAATCATCAGTACAG
CCATTGAAGCTATATTGACCTTAACAGTAGCATGTGTATTACTGAGCGAA
GTTGAAAACTTGGACATTCTTTGCGAATTTGTCAAATGTAAATACTTGAG
CTGGGGTGAGTATACATTTTTCATTTCCTGTAATACTATTTTCTTAAATC
GAGTTAAAGAAAGTCTAACACGATAAATTCTAATGATCTTATCATGGTGT
ATTATTGCTGGTTGGAGAGCAAAAGTTCCATCAGAAATTGAAGATGAAAT
TGAAAGCCAATCTTTCTTCTTAGCAGTAACCATATTGGAAACTCTTTTTA
ATACTGCAAATATCATCATCTTTATAATAAATGCTCATGAAAGTTTATTG
AAAATGATCAACTGGGAAATCTTTATCGGGAAAACAATGGAAGATCCGAA
CGGAATACGATCGGAACCAGCAGATTCAGAAGATGTTGCTCTCACTGATC
CATCATCGACAAGTAAACCAAAAAGTTTTTTGAGATCAAAATTTGGAATT
GTTTGGATTGTAAATACGCTAATCATCAGTACAGCCATTGAAGCTATATT
GACCTTAACAGTAGCATGTGTATTACTGAGCGAAGTTGAAAACTTGGACA
TTCTTTGCGAATTTGTCAAATGTAAATACTTGAGCTGGGGTGAGTATACA
TTTTTCATTTCCTGTAATACTATTTTCTTAAATCGAGTTAAAGAAAGTCT
AACACGATAAATTCTAATGATCTTATCATGGTGTATTATTGCTGGTTGGA
GAGCAAAAGTTCCATCAGAAATTGAAGATGAAATTGAAAGCCAATCTTTC
TTCTTAGCAGTAACCATATTGGAAACTCTTTTTAATACTGCAAATATCAT
CATCTTTATAATAAATGCTCATGAAAGTTTATTGAAAATGATCAACTGGG
AAATCTTTATCGGGAAAACAATGGAAGATCCGAACGGAATACGATCGGAA
CCAGCAGATTCAGAAGATGTTGCTCTCACTGATCCATCATCGACAAGTAA
ACCAAAAAGTTTTTTGAGATCAAAATTTGGAATTGTTTGGATTGTAAATA
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045287XLOC_045287Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073041-proteinTCONS_00073041-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073041-exon-scaffold_86-1575043694:872804..872949TCONS_00073041-exon-scaffold_86-1575043694:872804..872949Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1575043694:871995..872192TCONS_00073041-exon-scaffold_86-1575043694:871995..872192Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1575043694:871226..871449TCONS_00073041-exon-scaffold_86-1575043694:871226..871449Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1510915933:872804..872949TCONS_00073041-exon-scaffold_86-1510915933:872804..872949Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1510915933:871995..872192TCONS_00073041-exon-scaffold_86-1510915933:871995..872192Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1510915933:871226..871449TCONS_00073041-exon-scaffold_86-1510915933:871226..871449Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1491911889:872804..872949TCONS_00073041-exon-scaffold_86-1491911889:872804..872949Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1491911889:871995..872192TCONS_00073041-exon-scaffold_86-1491911889:871995..872192Clytia hemisphaericaexon
TCONS_00073041-exon-scaffold_86-1491911889:871226..871449TCONS_00073041-exon-scaffold_86-1491911889:871226..871449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:871226..872949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38353 1.44553 0.783254 1.20417 0.266539 0 0 0.118946 0 0.103152 0 0.131632 2.36609 3.75406 0 0 4.08027 6.31123 2.6263 2.41844 8.50381 7.27041 3.39928 1.95728 0.848822 3.50368 0 0 0.109687 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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