TCONS_00073013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073013
Unique NameTCONS_00073013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073013 ID=TCONS_00073013|Name=TCONS_00073013|organism=Clytia hemisphaerica|type=transcript|length=566bp
CTTATAACTGTCTCTCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTT
TCATGTTAATAACCGAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATG
GTTAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTT
CATTGATggttaaaaaagaattttgatgtGGCATTTTTGGAACAGGGCTT
AAGCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAA
AGAATGGTTTCATAGCTTTTAAAGACCAGTGTGAAATCACTTGATCAGAA
AGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTctacaa
caaaatcaaaattcttgCATATGAAACTTTCATCATCCATCGAACGCAAT
TTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCACTC
ACACACAACCTCCATGAAGTATTTCGACCAAATCAAAGACGACTTGACGC
CATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTT
TGGCGATCGATGGCNT
Run BLAST on NCBI

transcript from alignment at scaffold_86:829452..830221-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073013 ID=TCONS_00073013|Name=TCONS_00073013|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at scaffold_86:829452..830221- (Clytia hemisphaerica)
CTTATAACTGTCTCTCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTT TCATGTTAATAACCGAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATG GTTAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTT CATTGATGGTTAAAAAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTT AAGCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAA AGAATGGTTTCATAGCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTT TTGCTTCCCAATGAAGCCCTGTCAACTAAAGTATAACACACACTGTTGAT GGTTACCTACTGCTAACAACGTTGGGGTTTATAAACATCTAGGTAGACCC AGGCGGAAGAAGCAGAAACATCAAAACTAAGTTAACAGCATCCATATCCA GGTTAGAAATCTAAGAAATCTTCTTACTTTCAGTGTGAAATCACTTGATC AGAAAGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTCT ACAACAAAATCAAAATTCTTGCATATGAAACTTTCATCATCCATCGAACG CAATTTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATC ACTCACACACAACCTCCATGAAGTATTTCGACCAAATCAAAGACGACTTG ACGCCATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGAC ATTTTGGCGATCGATGGCNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045285XLOC_045285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073013-exon-scaffold_86-1575043694:829943..830221TCONS_00073013-exon-scaffold_86-1575043694:829943..830221Clytia hemisphaericaexon
TCONS_00073013-exon-scaffold_86-1575043694:829452..829738TCONS_00073013-exon-scaffold_86-1575043694:829452..829738Clytia hemisphaericaexon
TCONS_00073013-exon-scaffold_86-1510915933:829943..830221TCONS_00073013-exon-scaffold_86-1510915933:829943..830221Clytia hemisphaericaexon
TCONS_00073013-exon-scaffold_86-1510915933:829452..829738TCONS_00073013-exon-scaffold_86-1510915933:829452..829738Clytia hemisphaericaexon
TCONS_00073013-exon-scaffold_86-1491911889:829943..830221TCONS_00073013-exon-scaffold_86-1491911889:829943..830221Clytia hemisphaericaexon
TCONS_00073013-exon-scaffold_86-1491911889:829452..829738TCONS_00073013-exon-scaffold_86-1491911889:829452..829738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:829452..830221 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.85823 7.85746 1.37357 0.587909 0.306123 0.211803 0.540909 0 0 0.300913 0.157035 0.429749 0.265156 0.254025 0.377779 0.668758 1.01525 1.08567 0.619267 0.998097 2.25788 0.813611 5.25943 4.25939 0.295877 0.157769 0 0.193353 2.41042 2.25868
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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