TCONS_00073012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073012
Unique NameTCONS_00073012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073012 ID=TCONS_00073012|Name=TCONS_00073012|organism=Clytia hemisphaerica|type=transcript|length=2477bp
CTTATAACTGTCTCTCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTT
TCATGTTAATAACCGAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATG
GTTAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTT
CATTGATggttaaaaaagaattttgatgtGGCATTTTTGGAACAGGGCTT
AAGCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAA
AGAATGGTTTCATAGCTTTTAAAGACCAGTGTGAAATCACTTGATCAGAA
AGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTctacaa
caaaatcaaaattcttgCATATGAAACTTTCATCATCCATCGAACGCAAT
TTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCACTC
ACACACAACCTCCATGAAGTACTTCGACCAAATCAAAGACGACTTGACGC
CATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTT
TGGCGATCGATGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGC
CATAGTATTTCTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGC
TTATATTATTATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAAAA
GGACTATTAGTGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTTGA
CCGTACCAAAAGGATCAGCACGATTTGGATTTCCTCGATCATTTTATTAT
ACATTATAAACAACCATGATTGGAAAACCAAGCTTTTTGAATACATGAGA
ATCCATAAAGATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGCAT
TTTAAGAATTATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGC
AACATGATCTGGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCT
GTATGTTACAATGGACCTATAATCAATTTCGATACGTTTTACAAAGATGT
ATACCAGACTGCACGACAATATTCAATCACAGAAATCACCAAAGATGTAG
TATACACACTGGCAAACATCTTCGCATTGgaaatcttttttcacttcATT
TACGCCAATACCTTATGTGTATACCATGATATTCTCCAAGAGATGACAGT
CTTTGATGCAATATCCCTTTTCTGGATACATCTCCACATTTTCAATATCA
AATATTTCATCTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGA
GTTGAACCACCTGGACCACCGAAATGTATTGCCTCCTTATACACCTTTGT
GGATATGTGGAGATATTTTGATAAAGGCCTAaacacatttttatttcaaa
acatttataTACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACT
CTGGCCTCTTGTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGA
TAAATCATTAATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAG
AGTCTCTTGGGACAcgaataatcaaaacaaacatttacAGAAACTCTATA
AACAGATTCGGGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGC
TTTTTCAGTGTTCACTTTAATTTTTNTAGAAACACTATAAACAGATTTGG
GTGTTTGGCTCACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGTGT
TCACTTTAATTTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTGCA
GTTATTTTGTTATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATTTG
TTTATTTGTATTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTATA
cttaaattcatgatattcatgacgtaatgttttctacggaaatgcCCCGG
TTTTAGCCAATAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATtta
ccactactggcaaaaaccggggtctttccgtggaaaacattacgtcatga
atagcATGAATATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAATA
TTTGAAGCTCTAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCTAA
CTTTCTTCTACTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGTTC
AATGGGAGTTCACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAACTA
AATTTCTCAGTGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCATT
TAGGATTATATATATTCATAATTATCAGGACAAAAGAGATTAGAGACAAA
TAAAACAACATACTGtataattataattataattataattttcatcgcaa
cctttttagaatttcaatGTGTGCTGACAGGATTTAGTATGAGCTGTTGA
TGCACCCTTTTACTTTGCAGTAATCCG
Run BLAST on NCBI

transcript from alignment at scaffold_86:826455..830221-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073012 ID=TCONS_00073012|Name=TCONS_00073012|organism=Clytia hemisphaerica|type=transcript|length=3767bp|location=Sequence derived from alignment at scaffold_86:826455..830221- (Clytia hemisphaerica)
CTTATAACTGTCTCTCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTT TCATGTTAATAACCGAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATG GTTAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTT CATTGATGGTTAAAAAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTT AAGCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAA AGAATGGTTTCATAGCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTT TTGCTTCCCAATGAAGCCCTGTCAACTAAAGTATAACACACACTGTTGAT GGTTACCTACTGCTAACAACGTTGGGGTTTATAAACATCTAGGTAGACCC AGGCGGAAGAAGCAGAAACATCAAAACTAAGTTAACAGCATCCATATCCA GGTTAGAAATCTAAGAAATCTTCTTACTTTCAGTGTGAAATCACTTGATC AGAAAGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTCT ACAACAAAATCAAAATTCTTGCATATGAAACTTTCATCATCCATCGAACG CAATTTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATC ACTCACACACAACCTCCATGAAGTATTTCGACCAAATCAAAGACGACTTG ACGCCATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGAC ATTTTGGCGATCGATGGCNTCGATCTAGTATATTAAATGAAGATCAGTGG GGAAAAAACGTTCCTTAAATATAGGGTATAACGCCTTACTGATCATGTAC ATTGAAAAATATTTGAGAAGTCAGTTCACTTTCTGTTTATTCTACAATAT TTTTCGTTGGAATATGCGATAACCTTTGCTAACAATGAAAGTTCTACTCT AAATGCAAATGATAAAAAGCTACAGTATTTAACTAGCTGAATTAACCTTT GCTAACAATGAAAGTTCTACTCTAAATGCAAATGATAAAAAGCTACAGTA TTTAACTAGCTGAATTAACAAGCTATCAGAGACAAGCTTATAACTGTCTC TCCTCCGTACCGGATTTTCAATCAGGTTTTGAGGTTTCATGTTAATAACC GAACAGAAAAACGAAGGAGAGCTTTTTAATCTGATGGTTAACGAGAAAAC GCTATTAAGTAGCATATTACTGATAACACAGATTTTCATTGATGGTTAAA AAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTTAAGCGAATGGATAA CGGAATAAAGAAGATATATTTTATTTGGGACAGAAAAGAATGGTTTCATA GCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTTTTGCTTCCCAATGA AGCCCTGTCAACTAAAGTATAACACACACTGTTGATGGTTACCTACTGCT AACAACGTTGGGGTTTATAAACATCTAGGTAGACCCAGGCGGAAGAAGCA GAAACATCAAAACTAAGTTAACAGCATCCATATCCAGGTTAGAAATCTAA GAAATCTTCTTACTTTCAGTGTGAAATCACTTGATCAGAAAGACTTTTAA ACGATGTCGTCTTCACCAGCACCACAAACGACTTCTACAACAAAATCAAA ATTCTTGCATATGAAACTTTCATCATCCATCGAACGCAATTTCTATTGGA TAATATGGCTAACATCAATCATCTATCCTTTCTATCACTCACACACAACC TCCATGAAGTACTTCGACCAAATCAAAGACGACTTGACGCCATCATGGTT CGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTTTGGCGATCGA TGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGCCATAGTATTT CTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGCTTATATTATT ATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAAAAGGACTATTAG TGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTTGACCGTACCAAA AGGATCAGCACGATTTGGATTTCCTCGATCATTTTATTATACATTATAAA CAACCATGATTGGAAAACCAAGCTTTTTGAATACATGAGAATCCATAAAG ATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGCATTTTAAGAATT ATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGCAACATGATCT GGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCTGTATGTTACA ATGGACCTATAATCAATTTCGATACGTTTTACAAAGATGTATACCAGACT GCACGACAATATTCAATCACAGAAATCACCAAAGATGTAGTATACACACT GGCAAACATCTTCGCATTGGAAATCTTTTTTCACTTCATTTACGCCAATA CCTTATGTGTATACCATGATATTCTCCAAGAGATGACAGTCTTTGATGCA ATATCCCTTTTCTGGATACATCTCCACATTTTCAATATCAAATATTTCAT CTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGAGTTGAACCAC CTGGACCACCGAAATGTATTGCCTCCTTATACACCTTTGTGGATATGTGG AGATATTTTGATAAAGGCCTAAACACATTTTTATTTCAAAACATTTATAT ACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACTCTGGCCTCTT GTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGATAAATCATTA ATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAGAGTCTCTTGG GACACGAATAATCAAAACAAACATTTACAGAAACTCTATAAACAGATTCG GGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGCTTTTTCAGTG TTCACTTTAATTTTTNTAGAAACACTATAAACAGATTTGGGTGTTTGGCT CACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGTGTTCACTTTAAT TTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTGCAGTTATTTTGT TATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATTTGTTTATTTGTA TTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTATACTTAAATTCA TGATATTCATGACGTAATGTTTTCTACGGAAATGCCCCGGTTTTAGCCAA TAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATTTACCACTACTGG CAAAAACCGGGGTCTTTCCGTGGAAAACATTACGTCATGAATAGCATGAA TATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAATATTTGAAGCTC TAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCTAACTTTCTTCTA CTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGTTCAATGGGAGTT CACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAACTAAATTTCTCAG TGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCATTTAGGATTATA TATATTCATAATTATCAGGACAAAAGAGATTAGAGACAAATAAAACAACA TACTGTATAATTATAATTATAATTATAATTTTCATCGCAACCTTTTTAGA ATTTCAATGTGTGCTGACAGGATTTAGTATGAGCTGTTGATGCACCCTTT TACTTTGCAGTAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045285XLOC_045285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073012-exon-scaffold_86-1575043694:829943..830221TCONS_00073012-exon-scaffold_86-1575043694:829943..830221Clytia hemisphaericaexon
TCONS_00073012-exon-scaffold_86-1575043694:826455..828652TCONS_00073012-exon-scaffold_86-1575043694:826455..828652Clytia hemisphaericaexon
TCONS_00073012-exon-scaffold_86-1510915933:829943..830221TCONS_00073012-exon-scaffold_86-1510915933:829943..830221Clytia hemisphaericaexon
TCONS_00073012-exon-scaffold_86-1510915933:826455..828652TCONS_00073012-exon-scaffold_86-1510915933:826455..828652Clytia hemisphaericaexon
TCONS_00073012-exon-scaffold_86-1491911889:829943..830221TCONS_00073012-exon-scaffold_86-1491911889:829943..830221Clytia hemisphaericaexon
TCONS_00073012-exon-scaffold_86-1491911889:826455..828652TCONS_00073012-exon-scaffold_86-1491911889:826455..828652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:826455..830221 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0.062343 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
BLAST of TCONS_00073012 vs. Swiss-Prot (Human)
Match: HHAT (Protein-cysteine N-palmitoyltransferase HHAT OS=Homo sapiens GN=HHAT PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.428e-40
Identity = 109/424 (25.71%), Postives = 203/424 (47.88%), Query Frame = 2
Query:  434 YPFYHSHTTSMKYFDQIKDDL---TPSWFG-LHKDVSDYEWTFWRSMAFLLAALFSINSAIVFLVKRFIPAESQHXXXXXXXXXXQGAVISIKGLLVVLLFITLSYYLLDRTKRXXXXXXXXXXXXXXXNNHDWKTKLFEYMRIHKDSYDLVKLVLMMCILRIISFSN--FYLRSKDRQHDLDLPKLITFCLYIPVCYNGPIINFDTFYKDVYQTAR---QYSITEITKDVVYTLANIFALEIFFHFIYANTLCVYHDILQEMTVFDAISLFWIHLHIFNIKYFIFYRFSGIFAKVDGVEPPGPPKCIASLYTFVDMWRYFDKGLNTFLFQNIYIPLGGSAQGFGKQTLASCLCFSFVGYWHGADKSLMFWALTNWLGIVIESLGTRIIKTNIYRNSINR-FGCLAHRRLCALGGAFSVFTLIF 1675
            Y FY  +  S ++ +++  +    T + FG L KD +D+EW+FW            +   +V  +   +  + +  +++L  +     V+   G+ +VLL  T+S+ +     ++ T   S ++L  +      + K   Y    ++ Y L++  L +  L   SFS    + +          P ++ +  Y PV +NGPI++F  F K + Q      + S+  +   +   L   +  E+  H +Y + +     +L+ ++ +    L    +  F +KY + +    +  ++DG+ PP  P+C++++++F  MWRYFD GL+ FL + +YIP+GGS  G      ++ + F+FV YWHG    L  WA  NWLG+ +E+   R+++T   ++S+ R F   A RR  A   + S   LI 
Sbjct:   20 YSFYEVYKVSREHEEELDQEFELETDTLFGGLKKDATDFEWSFWMEWGKQWLVWLLLGHMVVSQMATLLARKHRPWILMLYGMWACWCVLGTPGVAMVLLHTTISFCVAQFRSQLLTWLCSLLLLSTLRLQGVEEVKRRWYKT--ENEYYLLQFTLTVRCLYYTSFSLELCWQQLPAASTSYSFPWMLAYVFYYPVLHNGPILSFSEFIKQMQQQEHDSLKASLCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLLETVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLIRYVYIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLARYFSPQARRRFHAALASCSTSMLIL 441          
The following BLAST results are available for this feature:
BLAST of TCONS_00073012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HHAT7.428e-4025.71Protein-cysteine N-palmitoyltransferase HHAT OS=Ho... [more]
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