TCONS_00073011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073011
Unique NameTCONS_00073011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073011 ID=TCONS_00073011|Name=TCONS_00073011|organism=Clytia hemisphaerica|type=transcript|length=2375bp
TAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTTCA
TTGATggttaaaaaagaattttgatgtGGCATTTTTGGAACAGGGCTTAA
GCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAAAG
AATGGTTTCATAGCTTTTAAAGACCAGTGTGAAATCACTTGATCAGAAAG
ACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTctacaaca
aaatcaaaattcttgCATATGAAACTTTCATCATCCATCGAACGCAATTT
CTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCACTCAC
ACACAACCTCCATGAAGTACTTCGACCAAATCAAAGACGACTTGACGCCA
TCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACATTTTG
GCGATCGATGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGCCA
TAGTATTTCTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGCTT
ATATTATTATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAAAAGG
ACTATTAGTGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTTGACC
GTACCAAAAGGATCAGCACGATTTGGATTTCCTCGATCATTTTATTATAC
ATTATAAACAACCATGATTGGAAAACCAAGCTTTTTGAATACATGAGAAT
CCATAAAGATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGCATTT
TAAGAATTATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGCAA
CATGATCTGGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCTGT
ATGTTACAATGGACCTATAATCAATTTCGATACGTTTTACAAAGATGTAT
ACCAGACTGCACGACAATATTCAATCACAGAAATCACCAAAGATGTAGTA
TACACACTGGCAAACATCTTCGCATTGgaaatcttttttcacttcATTTA
CGCCAATACCTTATGTGTATACCATGATATTCTCCAAGAGATGACAGTCT
TTGATGCAATATCCCTTTTCTGGATACATCTCCACATTTTCAATATCAAA
TATTTCATCTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGAGT
TGAACCACCTGGACCACCGAAATGTATTGCCTCCTTATACACCTTTGTGG
ATATGTGGAGATATTTTGATAAAGGCCTAaacacatttttatttcaaaac
atttataTACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACTCT
GGCCTCTTGTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGATA
AATCATTAATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAGAG
TCTCTTGGGACAcgaataatcaaaacaaacatttacAGAAACTCTATAAA
CAGATTCGGGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGCTT
TTTCAGTGTTCACTTTAATTTTTNTAGAAACACTATAAACAGATTTGGGT
GTTTGGCTCACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGTGTTC
ACTTTAATTTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTGCAGT
TATTTTGTTATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATTTGTT
TATTTGTATTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTATAct
taaattcatgatattcatgacgtaatgttttctacggaaatgcCCCGGTT
TTAGCCAATAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATttacc
actactggcaaaaaccggggtctttccgtggaaaacattacgtcatgaat
agcATGAATATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAATATT
TGAAGCTCTAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCTAACT
TTCTTCTACTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGTTCAA
TGGGAGTTCACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAACTAAA
TTTCTCAGTGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCATTTA
GGATTATATATATTCATAATTATCAGGACAAAAGAGATTAGAGACAAATA
AAACAACATACTGtataattataattataattataattttcatcgcaacc
tttttagaatttcaatGTGTGCTGACAGGATTTAGTATGAGCTGTTGATG
CACCCTTTTACTTTGCAGTAATCCG
Run BLAST on NCBI

protein sequence of TCONS_00073011-protein

>TCONS_00073011-protein ID=TCONS_00073011-protein|Name=TCONS_00073011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MSSSPAPQTTSTTKSKFLHMKLSSSIERNFYWIIWLTSIIYPFYHSHTTS
MKYFDQIKDDLTPSWFGLHKDVSDYEWTFWRSMAFLLAALFSINSAIVFL
VKRFIPAESQHLLILLSTLILQGAVISIKGLLVVLLFITLSYYLLDRTKR
ISTIWISSIILLYIINNHDWKTKLFEYMRIHKDSYDLVKLVLMMCILRII
SFSNFYLRSKDRQHDLDLPKLITFCLYIPVCYNGPIINFDTFYKDVYQTA
RQYSITEITKDVVYTLANIFALEIFFHFIYANTLCVYHDILQEMTVFDAI
SLFWIHLHIFNIKYFIFYRFSGIFAKVDGVEPPGPPKCIASLYTFVDMWR
YFDKGLNTFLFQNIYIPLGGSAQGFGKQTLASCLCFSFVGYWHGADKSLM
FWALTNWLGIVIESLGTRIIKTNIYRNSINRFGCLAHRRLCALGGAFSVF
TLIFXETL
Run BLAST on NCBI

transcript from alignment at scaffold_86:826455..829033-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073011 ID=TCONS_00073011|Name=TCONS_00073011|organism=Clytia hemisphaerica|type=transcript|length=2579bp|location=Sequence derived from alignment at scaffold_86:826455..829033- (Clytia hemisphaerica)
TAACGAGAAAACGCTATTAAGTAGCATATTACTGATAACACAGATTTTCA TTGATGGTTAAAAAAGAATTTTGATGTGGCATTTTTGGAACAGGGCTTAA GCGAATGGATAACGGAATAAAGAAGATATATTTTATTTGGGACAGAAAAG AATGGTTTCATAGCTTTTAAAGACCAGGTAAGAATATTGTTTTACTTTTT GCTTCCCAATGAAGCCCTGTCAACTAAAGTATAACACACACTGTTGATGG TTACCTACTGCTAACAACGTTGGGGTTTATAAACATCTAGGTAGACCCAG GCGGAAGAAGCAGAAACATCAAAACTAAGTTAACAGCATCCATATCCAGG TTAGAAATCTAAGAAATCTTCTTACTTTCAGTGTGAAATCACTTGATCAG AAAGACTTTTAAACGATGTCGTCTTCACCAGCACCACAAACGACTTCTAC AACAAAATCAAAATTCTTGCATATGAAACTTTCATCATCCATCGAACGCA ATTTCTATTGGATAATATGGCTAACATCAATCATCTATCCTTTCTATCAC TCACACACAACCTCCATGAAGTACTTCGACCAAATCAAAGACGACTTGAC GCCATCATGGTTCGGTCTCCATAAAGATGTTTCAGATTACGAATGGACAT TTTGGCGATCGATGGCGTTCCTCCTAGCAGCATTATTCTCAATAAATTCA GCCATAGTATTTCTGGTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCT GCTTATATTATTATCAACATTAATTCTCCAAGGAGCTGTCATATCCATAA AAGGACTATTAGTGGTTCTATTGTTCATCACACTCAGTTACTATTTGCTT GACCGTACCAAAAGGATCAGCACGATTTGGATTTCCTCGATCATTTTATT ATACATTATAAACAACCATGATTGGAAAACCAAGCTTTTTGAATACATGA GAATCCATAAAGATTCATACGATCTGGTGAAATTAGTTCTCATGATGTGC ATTTTAAGAATTATTTCGTTCTCGAATTTCTATCTACGATCGAAAGACCG GCAACATGATCTGGACCTTCCAAAGCTAATCACCTTTTGTCTATACATCC CTGTATGTTACAATGGACCTATAATCAATTTCGATACGTTTTACAAAGAT GTATACCAGACTGCACGACAATATTCAATCACAGAAATCACCAAAGATGT AGTATACACACTGGCAAACATCTTCGCATTGGAAATCTTTTTTCACTTCA TTTACGCCAATACCTTATGTGTATACCATGATATTCTCCAAGAGATGACA GTCTTTGATGCAATATCCCTTTTCTGGATACATCTCCACATTTTCAATAT CAAATATTTCATCTTTTACAGATTCTCTGGTATATTTGCCAAGGTTGACG GAGTTGAACCACCTGGACCACCGAAATGTATTGCCTCCTTATACACCTTT GTGGATATGTGGAGATATTTTGATAAAGGCCTAAACACATTTTTATTTCA AAACATTTATATACCGTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAA CTCTGGCCTCTTGTCTATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCT GATAAATCATTAATGTTCTGGGCCCTCACAAACTGGCTTGGAATCGTTAT AGAGTCTCTTGGGACACGAATAATCAAAACAAACATTTACAGAAACTCTA TAAACAGATTCGGGTGTTTGGCGCACCGACGATTGTGTGCACTGGGTGGT GCTTTTTCAGTGTTCACTTTAATTTTTNTAGAAACACTATAAACAGATTT GGGTGTTTGGCTCACCGACGATTGTGTGCACTGGGCGGCGCTTTTTCAGT GTTCACTTTAATTTTTACTAATATGGTCTTTTTGGTTGGTCATGACTCTG CAGTTATTTTGTTATATAGGGTTTTCTCTGTTTGGCATTGCCCTCTGATT TGTTTATTTGTATTTTACTGTGGAAATAATTGTAGTATTGATGCTAGTTA TACTTAAATTCATGATATTCATGACGTAATGTTTTCTACGGAAATGCCCC GGTTTTAGCCAATAGTGGCAAACTTAAATTAGACAAACGTTGTATAAATT TACCACTACTGGCAAAAACCGGGGTCTTTCCGTGGAAAACATTACGTCAT GAATAGCATGAATATCTTTTTCTCAGTGCCCGGAAAAGGCACCTCCCTAA TATTTGAAGCTCTAATAAGCGATAAAACTCTTTATAACTTTAGGAGGGCT AACTTTCTTCTACTTCACTTTCAATGGGGATGAGATTGCTATCAAAATGT TCAATGGGAGTTCACTTTCAGGGAGTTTACAAATTTGGGCGATTTTCAAC TAAATTTCTCAGTGGGGGTATGCTTCATCGGGTTTGTAAGCGAGAATGCA TTTAGGATTATATATATTCATAATTATCAGGACAAAAGAGATTAGAGACA AATAAAACAACATACTGTATAATTATAATTATAATTATAATTTTCATCGC AACCTTTTTAGAATTTCAATGTGTGCTGACAGGATTTAGTATGAGCTGTT GATGCACCCTTTTACTTTGCAGTAATCCG

Coding sequence (CDS) from alignment at scaffold_86:826455..829033-

>TCONS_00073011 ID=TCONS_00073011|Name=TCONS_00073011|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_86:826455..829033- (Clytia hemisphaerica)
ATGTCGTCTTCACCAGCACCACAAACGACTTCTACAACAAAATCAAAATT
CTTGCATATGAAACTTTCATCATCCATCGAACGCAATTTCTATTGGATAA
TATGGCTAACATCAATCATCTATCCTTTCTATCACTCACACACAACCTCC
ATGAAGTACTTCGACCAAATCAAAGACGACTTGACGCCATCATGGTTCGG
TCTCCATAAAGATGTTTCAGATTACGAATGGACATTTTGGCGATCGATGG
CGTTCCTCCTAGCAGCATTATTCTCAATAAATTCAGCCATAGTATTTCTG
GTTAAACGTTTTATCCCAGCAGAAAGCCAGCACCTGCTTATATTATTATC
AACATTAATTCTCCAAGGAGCTGTCATATCCATAAAAGGACTATTAGTGG
TTCTATTGTTCATCACACTCAGTTACTATTTGCTTGACCGTACCAAAAGG
ATCAGCACGATTTGGATTTCCTCGATCATTTTATTATACATTATAAACAA
CCATGATTGGAAAACCAAGCTTTTTGAATACATGAGAATCCATAAAGATT
CATACGATCTGGTGAAATTAGTTCTCATGATGTGCATTTTAAGAATTATT
TCGTTCTCGAATTTCTATCTACGATCGAAAGACCGGCAACATGATCTGGA
CCTTCCAAAGCTAATCACCTTTTGTCTATACATCCCTGTATGTTACAATG
GACCTATAATCAATTTCGATACGTTTTACAAAGATGTATACCAGACTGCA
CGACAATATTCAATCACAGAAATCACCAAAGATGTAGTATACACACTGGC
AAACATCTTCGCATTGGAAATCTTTTTTCACTTCATTTACGCCAATACCT
TATGTGTATACCATGATATTCTCCAAGAGATGACAGTCTTTGATGCAATA
TCCCTTTTCTGGATACATCTCCACATTTTCAATATCAAATATTTCATCTT
TTACAGATTCTCTGGTATATTTGCCAAGGTTGACGGAGTTGAACCACCTG
GACCACCGAAATGTATTGCCTCCTTATACACCTTTGTGGATATGTGGAGA
TATTTTGATAAAGGCCTAAACACATTTTTATTTCAAAACATTTATATACC
GTTGGGTGGTTCTGCCCAAGGTTTTGGTAAACAAACTCTGGCCTCTTGTC
TATGTTTCAGCTTCGTAGGTTATTGGCACGGAGCTGATAAATCATTAATG
TTCTGGGCCCTCACAAACTGGCTTGGAATCGTTATAGAGTCTCTTGGGAC
ACGAATAATCAAAACAAACATTTACAGAAACTCTATAAACAGATTCGGGT
GTTTGGCGCACCGACGATTGTGTGCACTGGGTGGTGCTTTTTCAGTGTTC
ACTTTAATTTTTNTAGAAACACTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045285XLOC_045285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073011-proteinTCONS_00073011-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073011-exon-scaffold_86-1575043694:828857..829033TCONS_00073011-exon-scaffold_86-1575043694:828857..829033Clytia hemisphaericaexon
TCONS_00073011-exon-scaffold_86-1575043694:826455..828652TCONS_00073011-exon-scaffold_86-1575043694:826455..828652Clytia hemisphaericaexon
TCONS_00073011-exon-scaffold_86-1510915933:828857..829033TCONS_00073011-exon-scaffold_86-1510915933:828857..829033Clytia hemisphaericaexon
TCONS_00073011-exon-scaffold_86-1510915933:826455..828652TCONS_00073011-exon-scaffold_86-1510915933:826455..828652Clytia hemisphaericaexon
TCONS_00073011-exon-scaffold_86-1491911889:828857..829033TCONS_00073011-exon-scaffold_86-1491911889:828857..829033Clytia hemisphaericaexon
TCONS_00073011-exon-scaffold_86-1491911889:826455..828652TCONS_00073011-exon-scaffold_86-1491911889:826455..828652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:826455..829033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.3156 13.989 5.26491 4.18454 0.170619 0.104783 0.774519 0.749677 0.483844 0.758972 0.123532 0.431429 1.83121 1.98614 1.58495 1.64683 2.92328 2.38327 2.04135 1.96766 1.87102 2.19439 8.82976 8.26982 1.23507 1.04325 0.991827 0.980074 3.40321 4.46992
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004299MBOAT_fam
Blast
BLAST of TCONS_00073011 vs. Swiss-Prot (Human)
Match: HHAT (Protein-cysteine N-palmitoyltransferase HHAT OS=Homo sapiens GN=HHAT PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.836e-40
Identity = 109/424 (25.71%), Postives = 203/424 (47.88%), Query Frame = 2
Query:  332 YPFYHSHTTSMKYFDQIKDDL---TPSWFG-LHKDVSDYEWTFWRSMAFLLAALFSINSAIVFLVKRFIPAESQHXXXXXXXXXXQGAVISIKGLLVVLLFITLSYYLLDRTKRXXXXXXXXXXXXXXXNNHDWKTKLFEYMRIHKDSYDLVKLVLMMCILRIISFSN--FYLRSKDRQHDLDLPKLITFCLYIPVCYNGPIINFDTFYKDVYQTAR---QYSITEITKDVVYTLANIFALEIFFHFIYANTLCVYHDILQEMTVFDAISLFWIHLHIFNIKYFIFYRFSGIFAKVDGVEPPGPPKCIASLYTFVDMWRYFDKGLNTFLFQNIYIPLGGSAQGFGKQTLASCLCFSFVGYWHGADKSLMFWALTNWLGIVIESLGTRIIKTNIYRNSINR-FGCLAHRRLCALGGAFSVFTLIF 1573
            Y FY  +  S ++ +++  +    T + FG L KD +D+EW+FW            +   +V  +   +  + +  +++L  +     V+   G+ +VLL  T+S+ +     ++ T   S ++L  +      + K   Y    ++ Y L++  L +  L   SFS    + +          P ++ +  Y PV +NGPI++F  F K + Q      + S+  +   +   L   +  E+  H +Y + +     +L+ ++ +    L    +  F +KY + +    +  ++DG+ PP  P+C++++++F  MWRYFD GL+ FL + +YIP+GGS  G      ++ + F+FV YWHG    L  WA  NWLG+ +E+   R+++T   ++S+ R F   A RR  A   + S   LI 
Sbjct:   20 YSFYEVYKVSREHEEELDQEFELETDTLFGGLKKDATDFEWSFWMEWGKQWLVWLLLGHMVVSQMATLLARKHRPWILMLYGMWACWCVLGTPGVAMVLLHTTISFCVAQFRSQLLTWLCSLLLLSTLRLQGVEEVKRRWYKT--ENEYYLLQFTLTVRCLYYTSFSLELCWQQLPAASTSYSFPWMLAYVFYYPVLHNGPILSFSEFIKQMQQQEHDSLKASLCVLALGLGRLLCWWWLAELMAHLMYMHAIYSSIPLLETVSCWTLGGLALAQVLFFYVKYLVLFGVPALLMRLDGLTPPALPRCVSTMFSFTGMWRYFDVGLHNFLIRYVYIPVGGSQHGLLGTLFSTAMTFAFVSYWHGGYDYLWCWAALNWLGVTVENGVRRLVETPCIQDSLARYFSPQARRRFHAALASCSTSMLIL 441          
The following BLAST results are available for this feature:
BLAST of TCONS_00073011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HHAT5.836e-4025.71Protein-cysteine N-palmitoyltransferase HHAT OS=Ho... [more]
back to top