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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073010 ID=TCONS_00073010|Name=TCONS_00073010|organism=Clytia hemisphaerica|type=transcript|length=1065bp
ACACAGACAGTAGTTGAACTGAAAAGAAACGCAATCAACAATAATTGTAA
AAATGaagctttcattttcaatattgtTGAACCTGTCCTTAATGTTTATT
CTTTATCAATCTGGAGATTGCACTCCAAAGAAAGGTGAACATAAAGACAT
TTTCCCAAGAAGAAAACGTcataagaaacaacatcaaaaaccGACAACAA
CTCCAACAACGACAACGACGGAAGAACCTGAAAGTGAGGCTAGCAAACAG
ATACAGCGCATGTACGAGTTTGGACAGCAAATCACCGACAATGCATACTC
GTTCACCATCGAAGAAGCATTTGAAAACACACCAAATCGCTCAATGTCAT
TTATAGCACCTGAGTTTCCATCTTGCAACAAAACAATTCCTAAGAGGTTG
GAACAAAAGATCAATGAGGTGCAAAAGCTTATAGACAGAAGTGGATGTGA
CAACGGTCTTAACGCAATgttaaaatcaccaaaaaagtCGTCGAAATCAA
AACACCGACAATTCCGTCATCATAACGTCCTTCATCGGCGACCATCTCGA
CGTTTACATCATCTTCTTTTCCGACATCGTCGGGAAGCGAGCATGTGTTT
GGAGATTGTTCCGAATGTGGATGGAAGTGAATCTTGCATTGTGGAATGTA
CAGAGAAGGGAGCAGTAGTGAATGGTGTTTTGCAAACTTGTACTGAATGT
TTGGTTTACACGACATTGCCCAGTGATGTctaCCCGAACGTTATCAAAGA
ATACACCTGCGATATCACTCCCGGAGCGTCGTTCGGTGGGAATTTATGTT
TTCGTGGCTCGGGAGGCTGTGTAGCGAGTTTCACGCAACTGACCCTTCTT
CGCGACGTCAATGGCGTTGGTCTGAACAATAAAGATCAGTTTTCCTCTTA
CACACAACTTCAAAGGACTGGGTGCCAGTGCCAGATGTTTGAACGTTCAC
CATACAGTGGAAGTGTCAGATAAGAAGAAATATATAATTTTTGCTTTTCG
CCGTTGTCCATCCTACgttgtattcatgatattcatgacgtaatgttttc
tacggaaataccccg Run BLAST on NCBI protein sequence of TCONS_00073010-protein >TCONS_00073010-protein ID=TCONS_00073010-protein|Name=TCONS_00073010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MKLSFSILLNLSLMFILYQSGDCTPKKGEHKDIFPRRKRHKKQHQKPTTT
PTTTTTEEPESEASKQIQRMYEFGQQITDNAYSFTIEEAFENTPNRSMSF
IAPEFPSCNKTIPKRLEQKINEVQKLIDRSGCDNGLNAMLKSPKKSSKSK
HRQFRHHNVLHRRPSRRLHHLLFRHRREASMCLEIVPNVDGSESCIVECT
EKGAVVNGVLQTCTECLVYTTLPSDVYPNVIKEYTCDITPGASFGGNLCF
RGSGGCVASFTQLTLLRDVNGVGLNNKDQFSSYTQLQRTGCQCQMFERSP
YSGSVR Run BLAST on NCBI transcript from alignment at scaffold_86:824094..825859- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073010 ID=TCONS_00073010|Name=TCONS_00073010|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at scaffold_86:824094..825859- (Clytia hemisphaerica)
ACACAGACAGTAGTTGAACTGAAAAGAAACGCAATCAACAATAATTGTAA
AAATGAAGCTTTCATTTTCAATATTGTTGAACCTGTCCTTAATGTTTATT
CTTTATCAATCTGGAGATTGCACTCCAAAGAAAGGTGAACATAAAGACAT
TTTCCCAAGAAGAAAACGTCATAAGAAACAACATCAAAAACCGACAACAA
CTCCAACAACGACAACGACGGAAGAACCTGAAAGTGAGGCTAGCAAACAG
ATACAGCGCATGTACGAGTTTGGACAGCAAATCACCGACAATGCATACTC
GTTCACCATCGAAGAAGCATTTGAAAACACACCAAATCGCTCAATGTCAT
TTATAGCACCTGAGTTTCCATCTTGCAACAAAACAATTCCTAAGAGGTTG
GAACAAAAGATCAATGAGGTGCAAAAGCTTATAGACAGAAGTGGATGTGA
CAACGGTCTTAACGCAATGTTAAAATCACCAAAAAAGTCGTCGAAATCAA
AACACCGACAATTCCGTCATCATAACGTCCTTCATCGGCGACCATCTCGA
CGTTTACATCATCTTCTTTTCCGACATCGTCGGGAAGCGAGCATGTGTTT
GGAGATTGTTCCGAATGTGGATGGAAGTGAATCTTGCATTGTGGAATGTA
CAGAGAAGGGAGCAGTAGTGAATGGTGTTTTGCAAACTTGTACTGAATGT
TTGGTTTACACGACATTGCCCAGTGATGTGTAAGTTATTCAACAATTACG
TCACCAGCAACATTTGCCTTGTTTTGATAGCAAGTTTCATAGTCTCTTCA
GTTCTCAATGCAGTAGCGTAACCAAGGGGGCGCAAAATTTGTGTAGGAGC
GCAGATTTTTATGACACTGTAATTATCTTTTTATATTATGAATAGACATT
TACAATGTCATAAAAATCTGCTCTCCTACACAAATTTTGCACCCCTTCTA
TCTACGCTGCTGCAATGTTTTCTAAGCCTTACTCCATAACTCGAAATTCC
CTTAACTCGAACAAATTTGTGTCCTCCGGGCGTGTTCGAGTTATAGAGAC
TCCACTGTATCTTTTTATATCGGATGCGATTTATATTTGATGTACATTCA
TCAAATGTGCATAATAATGCATACCACCCTTCTAAAAACAAGATAAAACT
TAATCCGAAAATTGATTTTGCAATGGATCTATGTGGAGTCAGATCACGCA
AACAACAAAGTTTTTCATTTTTTTGAAAAACTAATATTTCGCTTCACAAC
AAAAGCATCATCAGAGTGATAGTAATACTGAAAATGTTGAACAAAGTTCT
AAAAAAATCACAAATCAACTAGCGGAACAAATTCAAGTCACTAGAGGCTT
TCAAACAACAATCAAAGTCAGCTCAAGTCAGTGGTTGTATTATCATAGTA
TATCAATCATAAAACGTTTTTATTTTTTAGCTACCCGAACGTTATCAAAG
AATACACCTGCGATATCACTCCCGGAGCGTCGTTCGGTGGGAATTTATGT
TTTCGTGGCTCGGGAGGCTGTGTAGCGAGTTTCACGCAACTGACCCTTCT
TCGCGACGTCAATGGCGTTGGTCTGAACAATAAAGATCAGTTTTCCTCTT
ACACACAACTTCAAAGGACTGGGTGCCAGTGCCAGATGTTTGAACGTTCA
CCATACAGTGGAAGTGTCAGATAAGAAGAAATATATAATTTTTGCTTTTC
GCCGTTGTCCATCCTACGTTGTATTCATGATATTCATGACGTAATGTTTT
CTACGGAAATACCCCG Coding sequence (CDS) from alignment at scaffold_86:824094..825859- >TCONS_00073010 ID=TCONS_00073010|Name=TCONS_00073010|organism=Clytia hemisphaerica|type=CDS|length=1842bp|location=Sequence derived from alignment at scaffold_86:824094..825859- (Clytia hemisphaerica)
CTACCCGAACGTTATCAAAGAATACACCTGCGATATCACTCCCGGAGCGT
CGTTCGGTGGGAATTTATGTTTTCGTGGCTCGGGAGGCTGTGTAGCGAGT
TTCACGCAACTGACCCTTCTTCGCGACGTCAATGGCGTTGGTCTGAACAA
TAAAGATCAGTTTTCCTCTTACACACAACTTCAAAGGACTGGGTGCCAGT
GCCAGATGTTTGAACGTTCACCATACAGTGGAAGTGTCAGATAAATGAAG
CTTTCATTTTCAATATTGTTGAACCTGTCCTTAATGTTTATTCTTTATCA
ATCTGGAGATTGCACTCCAAAGAAAGGTGAACATAAAGACATTTTCCCAA
GAAGAAAACGTCATAAGAAACAACATCAAAAACCGACAACAACTCCAACA
ACGACAACGACGGAAGAACCTGAAAGTGAGGCTAGCAAACAGATACAGCG
CATGTACGAGTTTGGACAGCAAATCACCGACAATGCATACTCGTTCACCA
TCGAAGAAGCATTTGAAAACACACCAAATCGCTCAATGTCATTTATAGCA
CCTGAGTTTCCATCTTGCAACAAAACAATTCCTAAGAGGTTGGAACAAAA
GATCAATGAGGTGCAAAAGCTTATAGACAGAAGTGGATGTGACAACGGTC
TTAACGCAATGTTAAAATCACCAAAAAAGTCGTCGAAATCAAAACACCGA
CAATTCCGTCATCATAACGTCCTTCATCGGCGACCATCTCGACGTTTACA
TCATCTTCTTTTCCGACATCGTCGGGAAGCGAGCATGTGTTTGGAGATTG
TTCCGAATGTGGATGGAAGTGAATCTTGCATTGTGGAATGTACAGAGAAG
GGAGCAGTAGTGAATGGTGTTTTGCAAACTTGTACTGAATGTTTGGTTTA
CACGACATTGCCCAGTGATGTCTACCCGAACGTTATCAAAGAATACACCT
GCGATATCACTCCCGGAGCGTCGTTCGGTGGGAATTTATGTTTTCGTGGC
TCGGGAGGCTGTGTAGCGAGTTTCACGCAACTGACCCTTCTTCGCGACGT
CAATGGCGTTGGTCTGAACAATAAAGATCAGTTTTCCTCTTACACACAAC
TTCAAAGGACTGGGTGCCAGTGCCAGATGTTTGAACGTTCACCATACAGT
GGAAGTGTCAGATAAATGAAGCTTTCATTTTCAATATTGTTGAACCTGTC
CTTAATGTTTATTCTTTATCAATCTGGAGATTGCACTCCAAAGAAAGGTG
AACATAAAGACATTTTCCCAAGAAGAAAACGTCATAAGAAACAACATCAA
AAACCGACAACAACTCCAACAACGACAACGACGGAAGAACCTGAAAGTGA
GGCTAGCAAACAGATACAGCGCATGTACGAGTTTGGACAGCAAATCACCG
ACAATGCATACTCGTTCACCATCGAAGAAGCATTTGAAAACACACCAAAT
CGCTCAATGTCATTTATAGCACCTGAGTTTCCATCTTGCAACAAAACAAT
TCCTAAGAGGTTGGAACAAAAGATCAATGAGGTGCAAAAGCTTATAGACA
GAAGTGGATGTGACAACGGTCTTAACGCAATGTTAAAATCACCAAAAAAG
TCGTCGAAATCAAAACACCGACAATTCCGTCATCATAACGTCCTTCATCG
GCGACCATCTCGACGTTTACATCATCTTCTTTTCCGACATCGTCGGGAAG
CGAGCATGTGTTTGGAGATTGTTCCGAATGTGGATGGAAGTGAATCTTGC
ATTGTGGAATGTACAGAGAAGGGAGCAGTAGTGAATGGTGTTTTGCAAAC
TTGTACTGAATGTTTGGTTTACACGACATTGCCCAGTGATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073010-exon-scaffold_86-1575043694:825131..825859 | TCONS_00073010-exon-scaffold_86-1575043694:825131..825859 | Clytia hemisphaerica | exon |
| TCONS_00073010-exon-scaffold_86-1575043694:824094..824429 | TCONS_00073010-exon-scaffold_86-1575043694:824094..824429 | Clytia hemisphaerica | exon |
| TCONS_00073010-exon-scaffold_86-1510915933:825131..825859 | TCONS_00073010-exon-scaffold_86-1510915933:825131..825859 | Clytia hemisphaerica | exon |
| TCONS_00073010-exon-scaffold_86-1510915933:824094..824429 | TCONS_00073010-exon-scaffold_86-1510915933:824094..824429 | Clytia hemisphaerica | exon |
| TCONS_00073010-exon-scaffold_86-1491911889:825131..825859 | TCONS_00073010-exon-scaffold_86-1491911889:825131..825859 | Clytia hemisphaerica | exon |
| TCONS_00073010-exon-scaffold_86-1491911889:824094..824429 | TCONS_00073010-exon-scaffold_86-1491911889:824094..824429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:824094..825859 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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