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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073000 ID=TCONS_00073000|Name=TCONS_00073000|organism=Clytia hemisphaerica|type=transcript|length=2487bpRun BLAST on NCBI protein sequence of TCONS_00073000-protein >TCONS_00073000-protein ID=TCONS_00073000-protein|Name=TCONS_00073000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=702bp MWLNILLCMIAFQNAVLAFEFGKEPEESPQQSPPNHLFFGDVQLNGRQKVRun BLAST on NCBI transcript from alignment at scaffold_86:517682..532987- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073000 ID=TCONS_00073000|Name=TCONS_00073000|organism=Clytia hemisphaerica|type=transcript|length=15306bp|location=Sequence derived from alignment at scaffold_86:517682..532987- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:517682..532987- >TCONS_00073000 ID=TCONS_00073000|Name=TCONS_00073000|organism=Clytia hemisphaerica|type=CDS|length=33744bp|location=Sequence derived from alignment at scaffold_86:517682..532987- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073000 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.947e-27 Identity = 81/233 (34.76%), Postives = 116/233 (49.79%), Query Frame = 2
Query: 242 NGRQKVALKHHYNMGGSSSSSNVF------GADNRINRRWTNAVIPYEIDCSLENLDDAMDSIKKAMQEWEAKTCIRFVKRTNEKYFLQF-FRNTHCWGNVGMTS--YTKISVGHGCEFQHVMTHEIGHVVGFYHEQNRKDRDQYVKVHWENI--GQFKDAFDI-VQNTDSLGVPYDYESIMHYPWHAFSAN-GKKTMTPLKSLNGKTPYVA----LSALDAKQTSLMYDCSA 889
+GR+ L H + G +++ F +R R W VIPY I + A+ K+AM+ WE TC+ F++RT+E+ F+ F +R C VG IS+G C+ ++ HE+GHVVGF+HE R DRDQ+V + ENI GQ + + SLG YD++SIMHY + FS T+ P + NG P + LS D Q +Y C A
Sbjct: 122 DGRENTTLLH--SPGTLHAAAKTFSPRVRRATTSRTERIWPGGVIPYVIGGNFTGSQRAI--FKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKCPA 350 The following BLAST results are available for this feature:
BLAST of TCONS_00073000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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