TCONS_00072998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072998
Unique NameTCONS_00072998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072998 ID=TCONS_00072998|Name=TCONS_00072998|organism=Clytia hemisphaerica|type=transcript|length=1753bp
AACAGCGCTTGTTCTTGCTAAGGTCACAGGATAAAGAGAGATAGAAAGAG
TATATAGTGAAAGAACGAAGATTAGAGAAAAGCTCTTTTCGTTATCTGAT
CATAGATGTGGAAAACTGCTACGACAAGCTTATATCTGAAGGTTTGCAgt
tcctttagagctttagcatgGGCGGACGCctatacgccatcggaatatca
gataactctTTTTGTGCACTTTTgactattttcatttttcttttattttt
agatctgtgaaaaaaactttaaaaagcgAAATCAAAATGGGTGCTGGTAC
AAAGATCAAGACTGGAATCCTACTCGCTGTCACTGTTCTCTTATATGCTG
TTCATTGTATCCTCGCATCGCTTGCGGCCACTGGAAACCCAACCAAGTTT
TTCCCGAGATCAGTTGGAAATGCATCTGACATCTTCAAAGTCTTGATCAC
ACCTGTTGGAGCTACATTCAGTATCTGGGGagtgatttatttcttgcaAT
TTGTATGGCTTGTTTACGCCCTGGTCTCGTTATGCCGCTCTGGAACCGCC
ACAAACCTGTTGAGTGGTAAATTTTATGGTTGCTTCATTTTGAGCACCGT
TTTTATCACTACTTGGTTCTTCACCTGGACAAGACTTGaagctcttcaat
ctttgatCATGTTGGTGATTCAACAACTCTTCTTGGAAGTGGCATTTGGa
ttaGCATGCTCGAACCTCCGTGAATATCTGCAAGCACGTGACATCTCATC
TGAAAACAAGTCTGATGTTTGGTGCCAGAGAATCTTAGTCCAAAATGGTA
TCCTCTTCTATCTCACCTGGACCTTGGCAGCAACCATGCTTAGCTTCAGT
ATCGTCTTAAACCGTGATCTGGATGTCAGTGACCAATCAGCTTGCTTGGC
TTCCTTGGTCATTTTAACCATTGTTGTTCTAGGTTACTTCGTTTGTGAAT
CATGGGTCTTCCCAACCTATACTGAGTATACAGTGTCGGTCTATATTGGT
TTAATCTGGGCTTTCAGTGGAATCTTCTCAGGAGTCTGGGGAGAGAATGA
CGTCATTGGTGGTTATGTATTAGCGTTGTTGATCCTATCTTGTATCCTGT
TGATTGCACGTATTGTTATCATCGTGATGAGACATCGCCGACGATCGTAC
GCATCTATTGGTTATAATGCTGATACCGAAGCTATTACCACATAAACGAT
ATTAtaattgtaaatattttgtaaGCACTCCTACATTCCATTCACAAGCA
TTTTAGTTCAAGATATGAGCTGAACTCAACTTTACGAAACTTATTCTTAT
AGTCTGCTTTTAGTCTTAATAATGCAATTCTTTGAGTCTAAACTGAAGTT
GTAatgcaccttttcgaccgtagtcgcgcgggcatttttttgtccgctta
atcccactaaaaccgtctcaatccttttttgacgcatttttctattgtct
atatgtgcgaaaaaggactgggacggttttagtgggataaagcggacaaa
aaaatacccgcacgattacggtcgaaaagatgtattCAATGCAATCTCTT
CCTCGTGTTTCAGgtatcatatttttttaattctcattTTTACCATATTT
TTTTTGCAGGTCACTTATTTACTTCATGCTTTCTTAGATTCGCTTACACT
AGGCTTTTTTGACATTTATAACTTTatcttgaaaataaattgaaatataC
TTGATTTGAAAGATAACGGAAAAATCCAATTGTGTCAAAATTTTAATAGT
TTC
Run BLAST on NCBI

protein sequence of TCONS_00072998-protein

>TCONS_00072998-protein ID=TCONS_00072998-protein|Name=TCONS_00072998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MGAGTKIKTGILLAVTVLLYAVHCILASLAATGNPTKFFPRSVGNASDIF
KVLITPVGATFSIWGVIYFLQFVWLVYALVSLCRSGTATNLLSGKFYGCF
ILSTVFITTWFFTWTRLEALQSLIMLVIQQLFLEVAFGLACSNLREYLQA
RDISSENKSDVWCQRILVQNGILFYLTWTLAATMLSFSIVLNRDLDVSDQ
SACLASLVILTIVVLGYFVCESWVFPTYTEYTVSVYIGLIWAFSGIFSGV
WGENDVIGGYVLALLILSCILLIARIVIIVMRHRRRSYASIGYNADTEAI
TT
Run BLAST on NCBI

transcript from alignment at scaffold_86:509030..511607-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072998 ID=TCONS_00072998|Name=TCONS_00072998|organism=Clytia hemisphaerica|type=transcript|length=2578bp|location=Sequence derived from alignment at scaffold_86:509030..511607- (Clytia hemisphaerica)
AACAGCGCTTGTTCTTGCTAAGGTCACAGGATAAAGAGAGATAGAAAGAG
TATATAGTGAAAGAACGAAGATTAGAGAAAAGCTCTTTTCGTTATCTGAT
CATAGATGTGGAAAACTGCTACGACAAGCTTATATCTGAAGGTTTGCAGT
TCCTTTAGAGCTTTAGCATGGGCGGACGCCTATACGCCATCGGAATATCA
GATAACTCTTTTTGTGCACTTTTGACTATTTTCATTTTTCTTTTATTTTT
AGATCTGTGAAAAAAACTTTAAAAAGCGAAATCAAAATGGGTGCTGGTAC
AAAGATCAAGACTGGAATCCTACTCGCTGTCACTGTTCTCTTATATGCTG
TTCATTGTATCCTCGCATCGCTTGCGGCCACTGGAAACCCAACCAAGTTT
TTCCCGAGATCAGTTGGAAATGCATCTGACATCTTCAAAGTCTTGATCAC
ACCTGTTGGAGCTACATTCAGTATCTGGGGAGTGATTTATTTCTTGCAAT
TTGTATGGCTTGTTTACGCCCTGGTCTCGTTATGCCGCTCTGGAACCGCC
ACAAACCTGTTGAGTGGTAAATTTTATGGTTGCTTCATTTTGAGCACCGT
TTTTATCACTACTTGGTTCTTCACCTGGACAAGACTTGAAGCTCTTCAAT
CTTTGATCATGTTGGTGATTCAACAACTCTTCTTGGAAGTGGCATTTGGG
TAAGTGATACACAATGGCTTCTAAGCTAAGTACATCTTCTTTTCACAGAC
CCACTGGGACCCCTCCCACTGGAAAAACTTTGCCAGTGGAAAATCAACCT
CCATTTTTTATCCTCACTGAAAATACTCATAAACTAATTCTTACTGTAAA
ATATTATGCTATTTTCCCAGCATCTCCACTGAAATTTCTGAATTAAAAAC
AAAAGAATTGAAAACCCCAGCTATAAAGAATATTGGAATACCAATCCCCA
TCGAGTATCAGTCCGTTATTTTTATCCCCACTGGCTGAAAAAATCCTACC
GGGTCTGCGAGAAAGGGGTGTCTAAGTAGTACCAAACGAAGAACAAAGTG
TGAAAAAATCAATATTACCATTTTATAAACCCTAGAAGAATCCATCTATG
AAAAAAAAGTCAATGAAGTATTTTACAACAATGCCTGAATCAAAAGTATA
TTGAAAGGAAATCAGAACTAGTGCTCTCGTCACATTTTTACCTTTACCGA
CCGAGTAGTAGTATCAAACACCTTTTGGACCGTAGTCGCCAATTGCTGCG
CGGGCTTTTTTTGTCCGCTTTATCCCACTAAAACCGTTTCAGTCTTTTTT
TCGCACCTATAGACAATAGAAAAATGTGTCAAAAACGAATTGGATCGAGT
TTAGGAGGATAATTAAATAACTAAGTGGCATGCATCTGACCACTTTCAAA
AAGGCTCTCATCCAAAGGTTTTGGCTGGTCATGATCGAGAAAGAGTTTTA
TAAAGCTTAAAGAAAAGCATGTAGAACTTTTTTATATCATGTTATTAATC
TATCTTTAATTTTTTCATTTTTAGATTAGCATGCTCGAACCTCCGTGAAT
ATCTGCAAGCACGTGACATCTCATCTGAAAACAAGTCTGATGTTTGGTGC
CAGAGAATCTTAGTCCAAAATGGTATCCTCTTCTATCTCACCTGGACCTT
GGCAGCAACCATGCTTAGCTTCAGTATCGTCTTAAACCGTGATCTGGATG
TCAGTGACCAATCAGCTTGCTTGGCTTCCTTGGTCATTTTAACCATTGTT
GTTCTAGGTTACTTCGTTTGTGAATCATGGGTCTTCCCAACCTATACTGA
GTATACAGTGTCGGTCTATATTGGTTTAATCTGGGCTTTCAGTGGAATCT
TCTCAGGAGTCTGGGGAGAGAATGACGTCATTGGTGGTTATGTATTAGCG
TTGTTGATCCTATCTTGTATCCTGTTGATTGCACGTATTGTTATCATCGT
GATGAGACATCGCCGACGATCGTACGCATCTATTGGTTATAATGCTGATA
CCGAAGCTATTACCACATAAACGATATTATAATTGTAAATATTTTGTAAG
CACTCCTACATTCCATTCACAAGCATTTTAGTTCAAGATATGAGCTGAAC
TCAACTTTACGAAACTTATTCTTATAGTCTGCTTTTAGTCTTAATAATGC
AATTCTTTGAGTCTAAACTGAAGTTGTAATGCACCTTTTCGACCGTAGTC
GCGCGGGCATTTTTTTGTCCGCTTAATCCCACTAAAACCGTCTCAATCCT
TTTTTGACGCATTTTTCTATTGTCTATATGTGCGAAAAAGGACTGGGACG
GTTTTAGTGGGATAAAGCGGACAAAAAAATACCCGCACGATTACGGTCGA
AAAGATGTATTCAATGCAATCTCTTCCTCGTGTTTCAGGTATCATATTTT
TTTAATTCTCATTTTTACCATATTTTTTTTGCAGGTCACTTATTTACTTC
ATGCTTTCTTAGATTCGCTTACACTAGGCTTTTTTGACATTTATAACTTT
ATCTTGAAAATAAATTGAAATATACTTGATTTGAAAGATAACGGAAAAAT
CCAATTGTGTCAAAATTTTAATAGTTTC

Coding sequence (CDS) from alignment at scaffold_86:509030..511607-

>TCONS_00072998 ID=TCONS_00072998|Name=TCONS_00072998|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_86:509030..511607- (Clytia hemisphaerica)
ATTAGCATGCTCGAACCTCCGTGAATATCTGCAAGCACGTGACATCTCAT
CTGAAAACAAGTCTGATGTTTGGTGCCAGAGAATCTTAGTCCAAAATGGT
ATCCTCTTCTATCTCACCTGGACCTTGGCAGCAACCATGCTTAGCTTCAG
TATCGTCTTAAACCGTGATCTGGATGTCAGTGACCAATCAGCTTGCTTGG
CTTCCTTGGTCATTTTAACCATTGTTGTTCTAGGTTACTTCGTTTGTGAA
TCATGGGTCTTCCCAACCTATACTGAGTATACAGTGTCGGTCTATATTGG
TTTAATCTGGGCTTTCAGTGGAATCTTCTCAGGAGTCTGGGGAGAGAATG
ACGTCATTGGTGGTTATGTATTAGCGTTGTTGATCCTATCTTGTATCCTG
TTGATTGCACGTATTGTTATCATCGTGATGAGACATCGCCGACGATCGTA
CGCATCTATTGGTTATAATGCTGATACCGAAGCTATTACCACATAAATGG
GTGCTGGTACAAAGATCAAGACTGGAATCCTACTCGCTGTCACTGTTCTC
TTATATGCTGTTCATTGTATCCTCGCATCGCTTGCGGCCACTGGAAACCC
AACCAAGTTTTTCCCGAGATCAGTTGGAAATGCATCTGACATCTTCAAAG
TCTTGATCACACCTGTTGGAGCTACATTCAGTATCTGGGGAGTGATTTAT
TTCTTGCAATTTGTATGGCTTGTTTACGCCCTGGTCTCGTTATGCCGCTC
TGGAACCGCCACAAACCTGTTGAGTGGTAAATTTTATGGTTGCTTCATTT
TGAGCACCGTTTTTATCACTACTTGGTTCTTCACCTGGACAAGACTTGAA
GCTCTTCAATCTTTGATCATGTTGGTGATTCAACAACTCTTCTTGGAAGT
GGCATTTGGATTAGCATGCTCGAACCTCCGTGAATATCTGCAAGCACGTG
ACATCTCATCTGAAAACAAGTCTGATGTTTGGTGCCAGAGAATCTTAGTC
CAAAATGGTATCCTCTTCTATCTCACCTGGACCTTGGCAGCAACCATGCT
TAGCTTCAGTATCGTCTTAAACCGTGATCTGGATGTCAGTGACCAATCAG
CTTGCTTGGCTTCCTTGGTCATTTTAACCATTGTTGTTCTAGGTTACTTC
GTTTGTGAATCATGGGTCTTCCCAACCTATACTGAGTATACAGTGTCGGT
CTATATTGGTTTAATCTGGGCTTTCAGTGGAATCTTCTCAGGAGTCTGGG
GAGAGAATGACGTCATTGGTGGTTATGTATTAGCGTTGTTGATCCTATCT
TGTATCCTGTTGATTGCACGTATTGTTATCATCGTGATGAGACATCGCCG
ACGATCGTACGCATCTATTGGTTATAATGCTGATACCGAAGCTATTACCA
CATAAATGGGTGCTGGTACAAAGATCAAGACTGGAATCCTACTCGCTGTC
ACTGTTCTCTTATATGCTGTTCATTGTATCCTCGCATCGCTTGCGGCCAC
TGGAAACCCAACCAAGTTTTTCCCGAGATCAGTTGGAAATGCATCTGACA
TCTTCAAAGTCTTGATCACACCTGTTGGAGCTACATTCAGTATCTGGGGA
GTGATTTATTTCTTGCAATTTGTATGGCTTGTTTACGCCCTGGTCTCGTT
ATGCCGCTCTGGAACCGCCACAAACCTGTTGAGTGGTAAATTTTATGGTT
GCTTCATTTTGAGCACCGTTTTTATCACTACTTGGTTCTTCACCTGGACA
AGACTTGAAGCTCTTCAATCTTTGATCATGTTGGTGATTCAACAACTCTT
CTTGGAAGTGGCATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045277XLOC_045277Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072998-proteinTCONS_00072998-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072998-exon-scaffold_86-1575043694:510909..511607TCONS_00072998-exon-scaffold_86-1575043694:510909..511607Clytia hemisphaericaexon
TCONS_00072998-exon-scaffold_86-1575043694:509030..510083TCONS_00072998-exon-scaffold_86-1575043694:509030..510083Clytia hemisphaericaexon
TCONS_00072998-exon-scaffold_86-1510915933:510909..511607TCONS_00072998-exon-scaffold_86-1510915933:510909..511607Clytia hemisphaericaexon
TCONS_00072998-exon-scaffold_86-1510915933:509030..510083TCONS_00072998-exon-scaffold_86-1510915933:509030..510083Clytia hemisphaericaexon
TCONS_00072998-exon-scaffold_86-1491911889:510909..511607TCONS_00072998-exon-scaffold_86-1491911889:510909..511607Clytia hemisphaericaexon
TCONS_00072998-exon-scaffold_86-1491911889:509030..510083TCONS_00072998-exon-scaffold_86-1491911889:509030..510083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:509030..511607 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.87	117.986	95.783	84.0498	705.507	559.911	497.45	512.964	311.469	421.849	268.367	289.291	171.283	198.901	123.718	167.223	38.6292	53.2099	109.759	116.199	25.4923	22.813	56.6981	48.7381	11.5752	13.939	41.8159	45.2214	22.2268	21.2607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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