TCONS_00072997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072997
Unique NameTCONS_00072997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072997 ID=TCONS_00072997|Name=TCONS_00072997|organism=Clytia hemisphaerica|type=transcript|length=1378bp
TTTTTTTCTGTTGAGACCTGTGGATAGTTTTCTCgagttttctaattttt
cttcaaactATAACTGTGAAATGAAGAAAACATAACGAAGTCAAGATTAA
TTGATTGAAAGTACGGTTAAACAGTGGCTGAACTCTAAAGCTGAAGAAGA
CAAAACAAATCTTCAACCATGGCAAACGACACTACTAATAACGTTATCGG
TAACAAATTCCTGACCGGTTTCTTAATCGcaattgttttaaatttctacA
TCCTACACTGTATTGTCACCTCAATGTCTTTTGCCGGCAACGAAAAGCTT
TTCCCAAGGTCATACACTGAGGCATCAGACCTTCAAAAAGTCTCATTGAC
TCCTACTCATCACACTTACTCGATATGGGGATTCAACTGTTTCCTACAAC
TAGCATGGATCCTCTTTACGTTGATTTCACTTTGTAATAATGGAACAGCG
GCTAATATTTTGGACAAGAAGTTTTATGGTGCATACATGTTTGGTATTGT
TGCAATCAGTGTTTGGTTATTTGTCTGGTCCAACTTGGAGTCAGGCACAT
CTTTAGCCATGTTGATTATGAACCAAATATTTTTGGATTATGCTTTCGCt
ttCTCCTGTTTGAATCTTCGAAATTAtctcaaaacaaatgaaatatCTGA
CGAAAATAGCACAGACGTCTGGTGTCATCGAATCCTTATCCAGAATGGGA
TTTTGTTTTATGCTACCTGGAATTTCATGCTTTGTATGCAAAATATGGCT
ATTGTTATACATCACGGCCTGGGCGCTAGTGACCAGACCTCTAGTGCAGT
TACTTTAACCATTTTCATCCTTTCAGTTTTCGCTTTCTTCGTACTGGAAA
ATTGTTATTTTGGAGAATACATGGAGTATACAATCACGTTCTATTTTGGC
GTTATTTGGGTATTGGGTGGTATTTTCACAGAAGTCTGGGGAGAGAATAA
CGCAATTGGAGGAGTGGTTTTGGGAATGTTACTCATCGTATGTATCTTAT
GGGTGATTCGTTGTTACATTGTGTGGGTTAAATACAAAGTTGACAATTCT
GATGGTGAACTAGccaaaaaagacgaaaaagtTTCACTTGTTGGAAAGAA
TTGAATggataattttaaatttgaacagaaagctatttttaatttttaat
ctattttcattttttggatttctcattttttcttaTACGGAGTAAAAATT
CGGGGAAGGTTTGGTCGggggattttttcatttagtaGCATTGTACATTT
TATTCAACCTGTTTCAGGTTTCTCTACCCAGAAAGATATTTTACTCGACT
TTCTAAAGGCTAAGATTTTACGTCAAGATTGTAAGActtaatgtaatttt
ttttcttgaaatacgATTGAAATTCATc
Run BLAST on NCBI

transcript from alignment at scaffold_86:502682..508224-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072997 ID=TCONS_00072997|Name=TCONS_00072997|organism=Clytia hemisphaerica|type=transcript|length=5543bp|location=Sequence derived from alignment at scaffold_86:502682..508224- (Clytia hemisphaerica)
TTTTTTTCTGTTGAGACCTGTGGATAGTTTTCTCGAGTTTTCTAATTTTT
CTTCAAACTATAACTGTGAAATGAAGAAAACATAACGAAGTCAAGATTAA
TTGATTGAAAGTACGGTTAAACAGTGGCTGGTAGGTATTTTTTATTGTTC
TAAAGCAATTATAGATCCAGTGAGGTGTTGTTCTGTTTTTATATACAGGA
ACAATTTATTTCCTCTTTTTATAACTTTTCAACACCTTATTTTTACAAAT
CTTTACAATCTTGCAATTTTTCTTAAGCTGGACTCTTACTTGTGTGAGTT
TGTGGGTAATAAACCTTTTCATAAATTACGTCATGAACAGCGCTTACCTC
GTTTTGAAACTATTGCTATGGTAATTGACTCCCATAGAGGGGTTTACTCT
ATTAAAAAGTAACACTTGAACACTCAAAGGATTAAATCATCTTGGTAATG
GTTTCAAAACGAGGCAGTCGTTGCACTCAAAATAATTTATGACTAGCCAT
AATTTTCATTAAAGTGCCACCGCAGAAGAACGATCAAATAAGTTGTTGAA
TTTTGAAAGAAATGTTACTGATAGCCTTTACTTCTGTTAGAATGGCATCT
CATCTGAAGCAAAATTTAGTCTACAAATATTAGCAAGTTGTGNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGAAACGCGCGCGCAAA
ATTATGAGATGTTTTCCCAACTTTCCCTCACGAGTGAAGCTATGAATGCC
ATCCTCGGAAGCTTTAGGCTTCCTGCGGTGGCAAAAAGGCCTATTGATGG
TGGGTGATACACTCAATTGTCAAACATAAGAACAATTTAACAATAATGGT
AGCGTGTAATAGCTAAATTTTAAGCAATGTAAGCCTCAAATTAGTAGTAC
AGTGTGTCCCGAAAAAAGCGGATAATATGAAGTAAGATCCTCACAACATA
ATTTATACCAAACTTTTTGACTTATTTACTTAATATTTCTATCTCAATCA
TCTTGGGAATTATATATCTATATTGATTACAAAGAGAATTATAATCTTGT
TCCAATTCTCGTAAACCCAGTTTAGGTAATAAGTTTTGGATATCACAAAT
AAAATCTAGAATTAAATTTCGATACCTTTCTTTTATAATTTAGAACTCTA
AAGCTGAAGAAGACAAAACAAATCTTCAACCATGGCAAACGACACTACTA
ATAACGTTATCGGTAACAAATTCCTGACCGGTTTCTTAATCGCAATTGTT
TTAAATTTCTACATCCTACACTGTATTGTCACCTCAATGTCTTTTGCCGG
CAACGAAAAGCTTTTCCCAAGGTCATACACTGAGGCATCAGACCTTCAAA
AAGTCTCATTGACTCCTACTCATCACACTTACTCGATATGGGGATTCAAC
TGTTTCCTACAACTAGCATGGATCCTCTTTACGTTGATTTCACTTTGTAA
TAATGGAACAGCGGCTAATATTTTGGACAAGAAGTTTTATGGTGCATACA
TGTTTGGTATTGTTGCAATCAGTGTTTGGTTATTTGTCTGGTCCAACTTG
GAGTCAGGCACATCTTTAGCCATGTTGATTATGAACCAAATATTTTTGGA
TTATGCTTTCGCGTGAGTATAATATTTTAGCTTTGGTAGAGATTGTATTA
CAGAAACATAATTTATTGAAAGACTCTGGGGTGACGAGTATGACAGAGCT
CAAGATCGAAAATCATTCCTTGGAGCTTGGAGAGAAAATTTTAACCTTAA
TGAGGTCCATCACAACCTTTTGACTTAAGGGATTTTTGTTATTTCGTGAG
AACTTTTCAGAGAGCTGCTTGGTTTTTGTGATCCTTACAAATATTTTTGA
GGTGCGAGAAGGTATTCCTCCTTTCCTAAAAGGTATTAATTTCGCCTTGA
ATTGGTCAACTTTCCAAAAAAGCCATTCATGTCCTAGTTAAGAAAGGTCC
ATCAGCGATTTGTGACTATTTATTTAGCCTTTTATGAGGCCCCCAGCGGA
CCCAAAATTCACGGCATCACGCCACGAAAAACCCTCCATCACGCCATCAC
GCCAACCGCTGGGGGGGGCCTCTTTTATGACCAACTACTGATCCAAAAGC
TAAATATGGCCGTGTTTTCAATTAGCGTCTGTGACTTAAAAGTCTGAGTC
ATTGACCTCTAGAAAAGGAGCACGGATCTGTTAGTGGATGCAAGCAGCCT
AGTGGTTAAAATTTACGTATGTTATAGTCTAAGACCAAGACAAACCACTT
TCTAAGAAATAAGCCCGAAGCCGAAGAAAATTCGCAAACGGGTTTTTTTG
CCGAAAAAGGTTTACAGTCATAACGCCATAACGCCATTCTGCTATATTTT
ACCGCCTTTACTATCACTGTAACGGACGATAACATATGGTCTACTTTTTC
GTCACTTCCTTCAATTCTGCGGTACTGGCTACACTTTTAATTTCTTCCTG
TTTTTTTTTTACAGTTTCTCCTGTTTGAATCTTCGAAATTATCTCAAAAC
AAATGAAATATCTGACGAAAATAGCACAGACGTCTGGTGTCATCGAATCC
TTATCCAGAATGGGATTTTGTTTTATGCTACCTGGAATTTCATGCTTTGT
ATGCAAAATATGGCTATTGTTATACATCACGGCCTGGGCGCTAGTGACCA
GACCTCTAGTGCAGTTACTTTAACCATTTTCATCCTTTCAGTTTTCGCTT
TCTTCGTACTGGAAAATTGTTATTTTGGAGAATACATGGAGTATACAATC
ACGTTCTATTTTGGCGTTATTTGGGTATTGGGTGGTATTTTCACAGAAGT
CTGGGGAGAGAATAACGCAATTGGAGGAGTGGTTTTGGGAATGTTACTCA
TCGTATGTATCTTATGGGTGATTCGTTGTTACATTGTGTGGGTTAAATAC
AAAGTTGACAATTCTGATGGTGAACTAGCCAAAAAAGACGAAAAAGTTTC
ACTTGTTGGAAAGAATTGAATGGATAATTTTAAATTTGAACAGAAAGCTA
TTTTTAATTTTTAATCTATTTTCATTTTTTGGATTTCTCATTTTTTCTTA
TACGGAGTAAAAATTCGGGGAAGGTTTGGTCGGGGGATTTTTTCATTTAG
TAGCATTGTACATTTTATTCAACCTGTTTCAGGTTTCTCTACCCAGAAAG
ATATTTTACTCGACTTTCTAAAGGCTAAGATTTTACGTCAAGATTGTAAG
ACTTAATGTAATTTTTTTTCTTGAAATACGATTGAAATTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045276XLOC_045276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072997-exon-scaffold_86-1575043694:508095..508224TCONS_00072997-exon-scaffold_86-1575043694:508095..508224Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1575043694:504313..504781TCONS_00072997-exon-scaffold_86-1575043694:504313..504781Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1575043694:502682..503460TCONS_00072997-exon-scaffold_86-1575043694:502682..503460Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1510915933:508095..508224TCONS_00072997-exon-scaffold_86-1510915933:508095..508224Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1510915933:504313..504781TCONS_00072997-exon-scaffold_86-1510915933:504313..504781Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1510915933:502682..503460TCONS_00072997-exon-scaffold_86-1510915933:502682..503460Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1491911889:508095..508224TCONS_00072997-exon-scaffold_86-1491911889:508095..508224Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1491911889:504313..504781TCONS_00072997-exon-scaffold_86-1491911889:504313..504781Clytia hemisphaericaexon
TCONS_00072997-exon-scaffold_86-1491911889:502682..503460TCONS_00072997-exon-scaffold_86-1491911889:502682..503460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:502682..508224 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0910464	0.0295949	0.0343625	0.0672366	0.327416	0.226388	4.17494	4.82174	10.8807	4.49827	8.98939	9.20972	2.07896	2.43151	3.53278	3.95765	0.113914	0.537086	1.38724	1.55293	0.0880288	0.0429374	0.104392	0.0316358	0.0325842	0.0581612	0	0	0	0.068639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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