TCONS_00072996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072996
Unique NameTCONS_00072996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072996 ID=TCONS_00072996|Name=TCONS_00072996|organism=Clytia hemisphaerica|type=transcript|length=598bp
CCTGTGGATAGTTTTCTCgagttttctaatttttcttcaaactATAACTG
TGAAATGAAGAAAACATAACGAAGTCAAGATTAATTGATTGAAAGTACGG
TTAAACAGTGGCTGCATTTATCTTGGCACTGAACCATACAAGCATGGATG
TAAAATTAGTGGCACTTTTTGCCATCTTGATGATTGCATTGACTAATGCA
GAACATGTGAAAGTTGAGAAGAAGGAAAAAGGTGTACTGAAGATACATGA
TAAAAAAGTCGAGGAGGAGATCAACCGTCTTGTTGCTATGGGAAAGAAGA
TTGACGAAAACTTGAAACGACTTGCCGAGATGAAGCTTTCTGTGAAAAAC
GAAATCACAAAAATTATTAATGAAAAGTATCCCATCACCAAATTTATGAA
AGGTCAACAATCAGATTATTACAACAAGAGATCTGAAAACGGTGGTTGTT
GTCCATGGGTTATTTGGTGTTGCATCGGCTAAACTTTTGGCTCCCTGATG
GTAATGTCAAAAATCTAGGCTTGACTTTCGTTACTTCGTTTTGtagcttt
tctatttttgtagATAATTCAATCAAATGATGCTCAGACAAAATATTG
Run BLAST on NCBI

transcript from alignment at scaffold_86:499251..508208-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072996 ID=TCONS_00072996|Name=TCONS_00072996|organism=Clytia hemisphaerica|type=transcript|length=8958bp|location=Sequence derived from alignment at scaffold_86:499251..508208- (Clytia hemisphaerica)
CCTGTGGATAGTTTTCTCGAGTTTTCTAATTTTTCTTCAAACTATAACTG
TGAAATGAAGAAAACATAACGAAGTCAAGATTAATTGATTGAAAGTACGG
TTAAACAGTGGCTGGTAGGTATTTTTTATTGTTCTAAAGCAATTATAGAT
CCAGTGAGGTGTTGTTCTGTTTTTATATACAGGAACAATTTATTTCCTCT
TTTTATAACTTTTCAACACCTTATTTTTACAAATCTTTACAATCTTGCAA
TTTTTCTTAAGCTGGACTCTTACTTGTGTGAGTTTGTGGGTAATAAACCT
TTTCATAAATTACGTCATGAACAGCGCTTACCTCGTTTTGAAACTATTGC
TATGGTAATTGACTCCCATAGAGGGGTTTACTCTATTAAAAAGTAACACT
TGAACACTCAAAGGATTAAATCATCTTGGTAATGGTTTCAAAACGAGGCA
GTCGTTGCACTCAAAATAATTTATGACTAGCCATAATTTTCATTAAAGTG
CCACCGCAGAAGAACGATCAAATAAGTTGTTGAATTTTGAAAGAAATGTT
ACTGATAGCCTTTACTTCTGTTAGAATGGCATCTCATCTGAAGCAAAATT
TAGTCTACAAATATTAGCAAGTTGTGNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNACTGAAACGCGCGCGCAAAATTATGAGATGTTTTC
CCAACTTTCCCTCACGAGTGAAGCTATGAATGCCATCCTCGGAAGCTTTA
GGCTTCCTGCGGTGGCAAAAAGGCCTATTGATGGTGGGTGATACACTCAA
TTGTCAAACATAAGAACAATTTAACAATAATGGTAGCGTGTAATAGCTAA
ATTTTAAGCAATGTAAGCCTCAAATTAGTAGTACAGTGTGTCCCGAAAAA
AGCGGATAATATGAAGTAAGATCCTCACAACATAATTTATACCAAACTTT
TTGACTTATTTACTTAATATTTCTATCTCAATCATCTTGGGAATTATATA
TCTATATTGATTACAAAGAGAATTATAATCTTGTTCCAATTCTCGTAAAC
CCAGTTTAGGTAATAAGTTTTGGATATCACAAATAAAATCTAGAATTAAA
TTTCGATACCTTTCTTTTATAATTTAGAACTCTAAAGCTGAAGAAGACAA
AACAAATCTTCAACCATGGCAAACGACACTACTAATAACGTTATCGGTAA
CAAATTCCTGACCGGTTTCTTAATCGCAATTGTTTTAAATTTCTACATCC
TACACTGTATTGTCACCTCAATGTCTTTTGCCGGCAACGAAAAGCTTTTC
CCAAGGTCATACACTGAGGCATCAGACCTTCAAAAAGTCTCATTGACTCC
TACTCATCACACTTACTCGATATGGGGATTCAACTGTTTCCTACAACTAG
CATGGATCCTCTTTACGTTGATTTCACTTTGTAATAATGGAACAGCGGCT
AATATTTTGGACAAGAAGTTTTATGGTGCATACATGTTTGGTATTGTTGC
AATCAGTGTTTGGTTATTTGTCTGGTCCAACTTGGAGTCAGGCACATCTT
TAGCCATGTTGATTATGAACCAAATATTTTTGGATTATGCTTTCGCGTGA
GTATAATATTTTAGCTTTGGTAGAGATTGTATTACAGAAACATAATTTAT
TGAAAGACTCTGGGGTGACGAGTATGACAGAGCTCAAGATCGAAAATCAT
TCCTTGGAGCTTGGAGAGAAAATTTTAACCTTAATGAGGTCCATCACAAC
CTTTTGACTTAAGGGATTTTTGTTATTTCGTGAGAACTTTTCAGAGAGCT
GCTTGGTTTTTGTGATCCTTACAAATATTTTTGAGGTGCGAGAAGGTATT
CCTCCTTTCCTAAAAGGTATTAATTTCGCCTTGAATTGGTCAACTTTCCA
AAAAAGCCATTCATGTCCTAGTTAAGAAAGGTCCATCAGCGATTTGTGAC
TATTTATTTAGCCTTTTATGAGGCCCCCAGCGGACCCAAAATTCACGGCA
TCACGCCACGAAAAACCCTCCATCACGCCATCACGCCAACCGCTGGGGGG
GGCCTCTTTTATGACCAACTACTGATCCAAAAGCTAAATATGGCCGTGTT
TTCAATTAGCGTCTGTGACTTAAAAGTCTGAGTCATTGACCTCTAGAAAA
GGAGCACGGATCTGTTAGTGGATGCAAGCAGCCTAGTGGTTAAAATTTAC
GTATGTTATAGTCTAAGACCAAGACAAACCACTTTCTAAGAAATAAGCCC
GAAGCCGAAGAAAATTCGCAAACGGGTTTTTTTGCCGAAAAAGGTTTACA
GTCATAACGCCATAACGCCATTCTGCTATATTTTACCGCCTTTACTATCA
CTGTAACGGACGATAACATATGGTCTACTTTTTCGTCACTTCCTTCAATT
CTGCGGTACTGGCTACACTTTTAATTTCTTCCTGTTTTTTTTTTACAGTT
TCTCCTGTTTGAATCTTCGAAATTATCTCAAAACAAATGAAATATCTGAC
GAAAATAGCACAGACGTCTGGTGTCATCGAATCCTTATCCAGAATGGGAT
TTTGTTTTATGCTACCTGGAATTTCATGCTTTGTATGCAAAATATGGCTA
TTGTTATACATCACGGCCTGGGCGCTAGTGACCAGACCTCTAGTGCAGTT
ACTTTAACCATTTTCATCCTTTCAGTTTTCGCTTTCTTCGTACTGGAAAA
TTGTTATTTTGGAGAATACATGGAGTATACAATCACGTTCTATTTTGGCG
TTATTTGGGTATTGGGTGGTATTTTCACAGAAGTCTGGGGAGAGAATAAC
GCAATTGGAGGAGTGGTTTTGGGAATGTTACTCATCGTATGTATCTTATG
GGTGATTCGTTGTTACATTGTGTGGGTTAAATACAAAGTTGACAATTCTG
ATGGTGAACTAGCCAAAAAAGACGAAAAAGTTTCACTTGTTGGAAAGAAT
TGAATGGATAATTTTAAATTTGAACAGAAAGCTATTTTTAATTTTTAATC
TATTTTCATTTTTTGGATTTCTCATTTTTTCTTATACGGAGTAAAAATTC
GGGGAAGGTTTGGTCGGGGGATTTTTTCATTTAGTAGCATTGTACATTTT
ATTCAACCTGTTTCAGGTTTCTCTACCCAGAAAGATATTTTACTCGACTT
TCTAAAGGCTAAGATTTTACGTCAAGATTGTAAGACTTAATGTAATTTTT
TTTCTTGAAATACGATTGAAATTCATCACAAAAAGGTTAAAAAAGGTTCT
AACATTATTTCACAAAATTCAAAAATCCAAAATGAAGGGTTAAGACTTTT
CGACCCTCTCTAAAATAATATTCAGAAAAAGCTTATATATTTTTCCAAAC
CGCAATCGCGGTAAGTGAAAACTCGCAAAGATCTGCTGCACAAAGGAAAA
ATTGTAATTCAAATCAATAAAGCAAAAGCCTACCGTGAAAAGCACAGGTC
GAAATCATATCGACGCTGTGCCGACGAATCGAGATTCTATTCAGCGCGCA
ATCAACGAAGACAAAAGTAACCATGGCGACCATCCAAAATCTTGGATGAA
GTTCAAAGTTGATATTTTTATTCCCGTCGTTGAAAACACAACTAAAAAAA
GTCATCAATGCTTTTTAAAAAGAGTCAGTGATAGAGAATCGTAACATAAA
GTCTGTCTATTATTTCGATTCAATTAAAGTGACATTTCCATAATTAATCC
TAATAGTTTACTAATTACTGTTATACATTTGGGGATCATGTAAAAGATTT
CTTTCGAAAGAAACTCACTTCGATTACACTTGGAGGTTTCTGGGGAATTC
GTAAATAGTAAACTGCATNCTCACTTCGATTACACTTGGAGGTTTCTGGG
GAATTCGTGAATAGTAAACTGCATACTGATACAGTCTGCTAGACATTAAT
AAGGTAATATTTGCCCTTCATCTTCGATTTTTTCTACAGTGATTAGATTG
ACACATGTCTTCAGAGGTTAATATATTCTTTGAAAACTTAACCTCTGATA
CTCAGGGTAGCAAAAGCCCGCTATGGCTAGAAGTGTATCTCCTACGTAGG
ATTTGAAGCCGCTAGATCCTGCCTAAGTTTCGTGGCTCGAATATCAAGCA
GATATTTATTACACGATACAATAGCACACCGTTATACAAACGTCATAATT
ATTACTTTTAACACTTGACCGAAAATCAATCCCACCATCCTTTTCGTCTT
AATTAAAACGTCGTGAAAGCCATTACTTTTTCTTTGTAGTTGAGTGTAAT
TTGCACGCAGGCGTAGTTAACGCGAAGGGTGATGGGATTGAATTTCGGTC
AAACAGAAAAATCAATGTCTATTTTTAGATTCACTGTGGTATGCTATTCT
CTTGCACACTTCCTCCTGGGAATCTTTGTAAATTACCAGCTTTAAGACTG
TGTAACACAACAAAAAACGTTGGAATTAATATAATTATAAGTAATTACAA
TTAACTTTATACACTCTTGAGGGAATCCAATTTACCTTTTGTAGCAATGT
CATTATTTTGAAGTCCCTCGGGAATTTCGAAGCTTCTTTAAATTTTACGT
TTTTTCGATTTGTTTACTTTCAACAAGACACCATCAGTGAGAGAGGTGAA
GAGTCTCTTTCTTGAAGCACTTCTTGCATTGCATTTTATGTACAATCGTA
CAATTCTCTAAATTGATGTTCTGTTATCGGCTCCATTTTCGATAAGATTG
AAGTTCATCGTCAACTTTTCCTCGAAAAACAATCATTAGTGAAGCTCAAC
TTTTTGAGATATTAATTCTTCGATAAGCCTCCGTCTTTGATGAGATTTTG
TGGTCCTTTCCATTTCATTTGCTCTTTATTTAGATTACTAGTACTGTATC
CTCTAATTTCAATCGGAATAATCCCAAATTTGGGTTCTAGGTACAAATTG
GTATGGTCTTTTACAAAAAACCTTTTAAATTTTCTGCAAAAAATATGAAT
TACAATCTGATATTACACCCCTCACCAGCCCCACTGGAAAATTAAGCAGA
TATTTCGTCCCAGGTGGGAAAATACCCTTGAATTTCAGCTCCACTTGGAA
ATTGACTTTGATTTCATCCCCACTCGAAATTCCATGTTTAAAAATTACAC
TCAAAAACCCCCCGCACTGGGGTTTTAACCTTTGAGCAATAGAATCTTAT
CCCCATTAGGATTTCAATAGGAATTTTAATCCCCACAGAAGAAAAAAGTT
ACACTGGGGCTGTGAGACAGGGGGTGTTATATTGCGGGATCTTTTGTGAA
TCTTTTCGTACTATTTTATTCATGTATTCAATAATTGATCTTAAAATTTA
CATTTCCAGCATTTATCTTGGCACTGAACCATACAAGCATGGATGTAAAA
TTAGTGGCACTTTTTGCCATCTTGATGATTGCATTGACTAATGCAGAACA
TGTGAAAGTTGAGAAGAAGGGTAAAAGATTTTAGTGTTTCATAATCATAT
TATTTTAGAATAATTTTCAAAAATAATTATTCGTCAAAGCAATCTCAAAT
TTAAATTTTTTTAATCGTCGATTAATTTCCACAAAGATGGCTTATAATAA
ATTGTTTGTAACAGGTCAATGTTTTAACGTGTTTTCATAATGATTTTAGA
AAAAGGTGTACTGAAGATACATGATAAAAAAGTCGAGGAGGAGATCAACC
GTCTTGTTGCTATGGGAAAGAAGATTGACGAAAACTTGAAACGACTTGCC
GAGATGAAGCTTTCTGTGAAAAACGAAATCACAAAAATTATTAATGAAAA
GTATCCCATCACCAAATTTATGAAAGGTATGTTTATACACTCAATGAAGC
ATTTAAACCCGAAGGGCTAGAATTGAATCTTTTGCCTTTCTCGGGCAAAA
AAAAAGTGAAACCTTAAAATATATGCCGTATTTGTGACGACGAATTGAAA
CAGATTCCTTTGTTTTCGAGTGATACATCTTTTCGAAATTTAGGAGTAAA
TTTTAGTTTCAATCTGTCATTTGAGTAAAAACCAGGCAGACCGGCGGCTT
CCGATCCTACCAAGGTAATTCGAGCTTGTACTTAATTGGTTACACACTAT
CTATAAGATACACAAACATTTTGTCCAAAAGTCCTTCTGAAAAGGGGAAT
ATTTCTGAACCGAAGTAGTCAGGTTAGAGGCGAAAAATTTAAATTCGAGA
TTTTTTATATGTGGACTAGTAAATTCTGGTTGTGGTTCAACTGTTCTTAA
TTTTTTGCAATTTTAAGACTAAGATATTCTTAAATTGTTCTTATTATCTT
TACTTTTCACTTATTGACTAATTTGGCTTGAAATCTTATTCCTATGCGAT
TTTTAATCTGAGGTTGCGGCTGTTCCTTACTTGTCCTCAGCCTTTTTGCC
AAAATCAAGCCTTGTTTTATCAAGGTTGTTCTTCTATAAGAGTGTAAGTA
TAAATAGTTTGCATGTTCAATGTGCATTTTTTATCATACCCACAATTGTT
TTATTACTACAGGTCAACAATCAGATTATTACAACAAGAGATCTGAAAAC
GGTGGTTGTTGTCCATGGGTTATTTGGTGTTGCATCGGCTAAACTTTTGG
CTCCCTGATGGTAATGTCAAAAATCTAGGCTTGACTTTCGTTACTTCGTT
TTGTAGCTTTTCTATTTTTGTAGATAATTCAATCAAATGATGCTCAGACA
AAATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045276XLOC_045276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072996-exon-scaffold_86-1575043694:508095..508208TCONS_00072996-exon-scaffold_86-1575043694:508095..508208Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1575043694:500489..500599TCONS_00072996-exon-scaffold_86-1575043694:500489..500599Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1575043694:500133..500309TCONS_00072996-exon-scaffold_86-1575043694:500133..500309Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1575043694:499251..499446TCONS_00072996-exon-scaffold_86-1575043694:499251..499446Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1510915933:508095..508208TCONS_00072996-exon-scaffold_86-1510915933:508095..508208Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1510915933:500489..500599TCONS_00072996-exon-scaffold_86-1510915933:500489..500599Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1510915933:500133..500309TCONS_00072996-exon-scaffold_86-1510915933:500133..500309Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1510915933:499251..499446TCONS_00072996-exon-scaffold_86-1510915933:499251..499446Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1491911889:508095..508208TCONS_00072996-exon-scaffold_86-1491911889:508095..508208Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1491911889:500489..500599TCONS_00072996-exon-scaffold_86-1491911889:500489..500599Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1491911889:500133..500309TCONS_00072996-exon-scaffold_86-1491911889:500133..500309Clytia hemisphaericaexon
TCONS_00072996-exon-scaffold_86-1491911889:499251..499446TCONS_00072996-exon-scaffold_86-1491911889:499251..499446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:499251..508208 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
439.315	469.318	336.871	308.939	179.308	131.734	18.5935	22.4317	5.07879	8.6295	4.20601	1.93182	0.121312	0	0	0	0	0	0	0	0.318993	0.16996	214.389	185.066	0	0.174783	8.56878	10.7825	84.0265	98.3262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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