TCONS_00072980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072980
Unique NameTCONS_00072980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072980 ID=TCONS_00072980|Name=TCONS_00072980|organism=Clytia hemisphaerica|type=transcript|length=2186bp
ANGATATCATTGGAAACAATATAAAACTTATCATTTCAGCATTTTCTCAA
CGAACAGTTGATGAAGCTAACGACCCTTCACTCGTATCATATCGAAGttt
atgtttggattttttAAACATCGAGCTACATCaaataaagcaagaaaaaa
gaCTGGTAATAGAATTAGACAGACCGttggaaaattcttttgtttttcga
tATTTTACCAAGCATAAGATCTATTTTGAAAGGATCGATAACAAACACAA
TACCATTAAGTCAACAATCTTAGAATATGATTACTCGGGTAAATTTTTAT
ATTCATATTCCATTGATTNCTCTTCCACACTGGTAAATATTATTTGTTCC
tacaagaagaaaatgaagaaaatatcgTTCACGTGATCAAATTCGATATA
GAAGAATTCCAATGGTTGCACAGTCGAATTATTATCAGATTACCAGAAAC
TGAACTCGAATGTCACcgagaaaatgttttcaattcaACCAGTGGTGTAT
TGGTTCATATCATACAAACATACCCAACAAACGAACGTCATGAAACTGTA
ATGGATCTTTATACTTACAACATTGTTGATCTTTTTGACGANAGAAACTG
TAATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAGCTTAAT
GGTAAAGATGTAAAAATTCCTGAATCAACTGAACCAGAATCACCACCAAG
AAAACCGACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAAATTCAC
CAGATCTATCTTTTATGACTAGTATCTTTGAAGATTCGTACGATCAAGAT
TCAAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCCCTCAGA
AtcacaaaatcaaaatctaaacATGGAACATGGTTCATCAGAGTCACTTA
AAGCTGATTTAAATAGAGATTTGCATCATCAAGATTCAAAGATTGACGAC
GAAGCATCCACTCCAGATCTGTCTTTGGCATATGATCAGTTATTTAACTC
TATAACTTGTAAATATGCAAAATTTCTTGGCCACGAGAATGCCACTTTAC
TTATAAGCAGTTATTTTACTCCGTATTATGAGAGTAACCAGGATGAGAGA
TACAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTGTCACGA
GAAAAGATTGGTCTTAGATTTCGATACGGTTGGTGGATCAGTAATTGCGA
GAAGGGAATATACtaaagacaaaatatttttctttaaaaggtcttATATT
GAAGACAGTGAAGATATAATGAACCTAAAGATCCTCGAATGTGATTATTC
TGGTAATTTTTTATATTCGTATAATCTGGAATACATTGAATCGTGGATGT
TTAATGTTGTTGATCTTAAACATTCAAATTACATATTTCTTTATAATGGT
TATGGCGAATTGGAGGACCTTGAATTAAGAGTTTTAAAACTGGAGAATGG
GGTTCTTTTGTCaataaatgaaacaaaaaacttCATTCCCTGCGTGAAAG
TACCAGTAGAATATAGAGATAGGGACTTGAGAGTGCGTGCCCCTATCAAG
AAGTTCGATCGCCTTGTTATGCCATTTTACTGTACCACAAGGGATGTATT
TCACCCTGAATTTTACATGGCAATTGATTTATCTACTACAGAAGTTGTTC
ACCAAATTATTTCTCCTGAAAATTCACATCCTTGCTATTCTGTAAATTGG
AACAATGAAGAAATTGGGATGACTTTTCGTAAAGATAATCTTCAAAATGC
TACGAGACTTGGACCGTTATGTTTTAAAATGGCTTGCAatgatattgaaa
agaaaaaaaaaataaatctttgaaATATTTGTCAAGATTTGCTGTTTTGA
CATCGTTTACTTATAATGAATTATTTAAAGCAAATCTTCCGTCTTCATTA
TTTAATTATTTGGGTATTGAAAACTAGTTGCTTACTGAATACATTTTCCA
ccaatatttgaaaaacattgGAAAAATGGAGGAAAAGCAAAAAggaaatt
catcaaaatcacCTAATATGAAGCGAACATTATTAATATTGATAGTTTTG
TATCCTTCCCTTTATGAAATTTTATAAGATTCTATCAAACTATTTTATAC
CATATTACATATTTATAATTAGGACAACTATTTTACagaatttataattt
tttattttatcaaacaacTCAATGAATGAATTGCCA
Run BLAST on NCBI

protein sequence of TCONS_00072980-protein

>TCONS_00072980-protein ID=TCONS_00072980-protein|Name=TCONS_00072980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MDLYNYNIVDLFDELNGKDVKIPESTEPESPPRKPTFYNPEDFSEPQNSP
DLSFMTSIFEDSYDQDSNDESSRPTSFFELPSESQNQNLNMEHGSSESLK
ADLNRDLHHQDSKIDDEASTPDLSLAYDQLFNSITCKYAKFLGHENATLL
ISSYFTPYYESNQDERYNYLDFIKIQKDQLCHEKRLVLDFDTVGGSVIAR
REYTKDKIFFFKRSYIEDSEDIMNLKILECDYSGNFLYSYNLEYIESWMF
NVVDLKHSNYIFLYNGYGELEDLELRVLKLENGVLLSINETKNFIPCVKV
PVEYRDRDLRVRAPIKKFDRLVMPFYCTTRDVFHPEFYMAIDLSTTEVVH
QIISPENSHPCYSVNWNNEEIGMTFRKDNLQNATRLGPLCFKMACNDIEK
KKKINL
Run BLAST on NCBI

transcript from alignment at scaffold_86:1400473..1402745+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072980 ID=TCONS_00072980|Name=TCONS_00072980|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at scaffold_86:1400473..1402745+ (Clytia hemisphaerica)
ANGATATCATTGGAAACAATATAAAACTTATCATTTCAGCATTTTCTCAA
CGAACAGTTGATGAAGCTAACGACCCTTCACTCGTATCATATCGAAGttt
atgtttggattttttAAACATCGAGCTACATCaaataaagcaagaaaaaa
gaCTGGTAATAGAATTAGACAGACCGttggaaaattcttttgtttttcga
tATTTTACCAAGCATAAGATCTATTTTGAAAGGATCGATAACAAACACAA
TACCATTAAGTCAACAATCTTAGAATATGATTACTCGGGTAAATTTTTAT
ATTCATATTCCATTGATTNCTCTTCCACACTGGTAAATATTATTTGTTCC
tacaagaagaaaatgaagaaaatatcgTTCACGTGATCAAATTCGATATA
GAAGAATTCCAATGGTTGCACAGTCGAATTATTATCAGATTACCAGAAAC
TGAACTCGAATGTCACcgagaaaatgttttcaattcaACCAGTGGTGTAT
TGGTTCATATCATACAAACATACCCAACAAACGAACGTCATGAAACTGTA
ATGGATCTTTATACTTACAACATTGTTGATCTTTTTGACGANAGAAACTG
TAATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAGCTTAAT
GGTAAAGATGTAAAAATTCCTGAATCAACTGAACCAGAATCACCACCAAG
AAAACCGACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAAATTCAC
CAGATCTATCTTTTATGACTAGTATCTTTGAAGATTCGTACGATCAAGAT
TCAAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCCCTCAGA
AtcacaaaatcaaaatctaaacATGGAACATGGTTCATCAGAGTCACTTA
AAGCTGATTTAAATAGAGATTTGCATCATCAAGATTCAAAGATTGACGAC
GAAGCATCCACTCCAGATCTGTCTTTGGCATATGATCAGTTATTTAACTC
TATAACTTGTAAATATGCAAAATTTCTTGGCCACGAGAATGCCACTTTAC
TTATAAGCAGTTATTTTACTCCGTATTATGAGAGTAACCAGGATGAGAGA
TACAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTGTCACGA
GAAAAGATTGGTCTTAGATTTCGATACGGTTGGTGGATCAGTAATTGCGA
GAAGGGAATATACtaaagacaaaatatttttctttaaaaggtcttATATT
GAAGACAGTGAAGATATAATGAACCTAAAGATCCTCGAATGTGATTATTC
TGGTAATTTTTTATATTCGTATAATCTGGAATACATTGAATNTAGTGAAG
AAATAATGAACTTAAAGATCCTTGAATGTGATTATTCTGGTAATTTTTTA
TATTCGTATGATTTAGAATACATTGAATCGTGGATGTTTAATGTTGTTGA
TCTTAAACATTCAAATTACATATTTCTTTATAATGGTTATGGCGAATTGG
AGGACCTTGAATTAAGAGTTTTAAAACTGGAGAATGGGGTTCTTTTGTCa
ataaatgaaacaaaaaacttCATTCCCTGCGTGAAAGTACCAGTAGAATA
TAGAGATAGGGACTTGAGAGTGCGTGCCCCTATCAAGAAGTTCGATCGCC
TTGTTATGCCATTTTACTGTACCACAAGGGATGTATTTCACCCTGAATTT
TACATGGCAATTGATTTATCTACTACAGAAGTTGTTCACCAAATTATTTC
TCCTGAAAATTCACATCCTTGCTATTCTGTAAATTGGAACAATGAAGAAA
TTGGGATGACTTTTCGTAAAGATAATCTTCAAAATGCTACGAGACTTGGA
CCGTTATGTTTTAAAATGGCTTGCAatgatattgaaaagaaaaaaaaaat
aaatctttgaaATATTTGTCAAGATTTGCTGTTTTGACATCGTTTACTTA
TAATGAATTATTTAAAGCAAATCTTCCGTCTTCATTATTTAATTATTTGG
GTATTGAAAACTAGTTGCTTACTGAATACATTTTCCAccaatatttgaaa
aacattgGAAAAATGGAGGAAAAGCAAAAAggaaattcatcaaaatcacC
TAATATGAAGCGAACATTATTAATATTGATAGTTTTGTATCCTTCCCTTT
ATGAAATTTTATAAGATTCTATCAAACTATTTTATACCATATTACATATT
TATAATTAGGACAACTATTTTACagaatttataattttttattttatcaa
acaacTCAATGAATGAATTGCCA

Coding sequence (CDS) from alignment at scaffold_86:1400473..1402745+

>TCONS_00072980 ID=TCONS_00072980|Name=TCONS_00072980|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_86:1400473..1402745+ (Clytia hemisphaerica)
ATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAGCTTAATGG
TAAAGATGTAAAAATTCCTGAATCAACTGAACCAGAATCACCACCAAGAA
AACCGACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAAATTCACCA
GATCTATCTTTTATGACTAGTATCTTTGAAGATTCGTACGATCAAGATTC
AAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCCCTCAGAAt
cacaaaatcaaaatctaaacATGGAACATGGTTCATCAGAGTCACTTAAA
GCTGATTTAAATAGAGATTTGCATCATCAAGATTCAAAGATTGACGACGA
AGCATCCACTCCAGATCTGTCTTTGGCATATGATCAGTTATTTAACTCTA
TAACTTGTAAATATGCAAAATTTCTTGGCCACGAGAATGCCACTTTACTT
ATAAGCAGTTATTTTACTCCGTATTATGAGAGTAACCAGGATGAGAGATA
CAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTGTCACGAGA
AAAGATTGGTCTTAGATTTCGATACGGTTGGTGGATCAGTAATTGCGAGA
AGGGAATATACtaaagacaaaatatttttctttaaaaggtcttATATTGA
AGACAGTGAAGATATAATGAACCTAAAGATCCTCGAATGTGATTATTCTG
GTAATTTTTTATATTCGTATAATCTGGAATACATTGAATCGTGGATGTTT
AATGTTGTTGATCTTAAACATTCAAATTACATATTTCTTTATAATGGTTA
TGGCGAATTGGAGGACCTTGAATTAAGAGTTTTAAAACTGGAGAATGGGG
TTCTTTTGTCaataaatgaaacaaaaaacttCATTCCCTGCGTGAAAGTA
CCAGTAGAATATAGAGATAGGGACTTGAGAGTGCGTGCCCCTATCAAGAA
GTTCGATCGCCTTGTTATGCCATTTTACTGTACCACAAGGGATGTATTTC
ACCCTGAATTTTACATGGCAATTGATTTATCTACTACAGAAGTTGTTCAC
CAAATTATTTCTCCTGAAAATTCACATCCTTGCTATTCTGTAAATTGGAA
CAATGAAGAAATTGGGATGACTTTTCGTAAAGATAATCTTCAAAATGCTA
CGAGACTTGGACCGTTATGTTTTAAAATGGCTTGCAatgatattgaaaag
aaaaaaaaaataaatctttgaATGGATCTTTATAATTACAACATTGTTGA
TCTTTTTGACGAGCTTAATGGTAAAGATGTAAAAATTCCTGAATCAACTG
AACCAGAATCACCACCAAGAAAACCGACATTTTATAATCCTGAGGATTTT
TCAGAACCCCAAAATTCACCAGATCTATCTTTTATGACTAGTATCTTTGA
AGATTCGTACGATCAAGATTCAAACGATGAATCTAGTAGACCTACATCGT
TTTTTGAATTGCCCTCAGAAtcacaaaatcaaaatctaaacATGGAACAT
GGTTCATCAGAGTCACTTAAAGCTGATTTAAATAGAGATTTGCATCATCA
AGATTCAAAGATTGACGACGAAGCATCCACTCCAGATCTGTCTTTGGCAT
ATGATCAGTTATTTAACTCTATAACTTGTAAATATGCAAAATTTCTTGGC
CACGAGAATGCCACTTTACTTATAAGCAGTTATTTTACTCCGTATTATGA
GAGTAACCAGGATGAGAGATACAACTATCTGGATTTTATCAAGATACAAA
AAGATCAACTTTGTCACGAGAAAAGATTGGTCTTAGATTTCGATACGGTT
GGTGGATCAGTAATTGCGAGAAGGGAATATACtaaagacaaaatattttt
ctttaaaaggtcttATATTGAAGACAGTGAAGATATAATGAACCTAAAGA
TCCTCGAATGTGATTATTCTGGTAATTTTTTATATTCGTATAATCTGGAA
TACATTGAATCGTGGATGTTTAATGTTGTTGATCTTAAACATTCAAATTA
CATATTTCTTTATAATGGTTATGGCGAATTGGAGGACCTTGAATTAAGAG
TTTTAAAACTGGAGAATGGGGTTCTTTTGTCaataaatgaaacaaaaaac
ttCATTCCCTGCGTGAAAGTACCAGTAGAATATAGAGATAGGGACTTGAG
AGTGCGTGCCCCTATCAAGAAGTTCGATCGCCTTGTTATGCCATTTTACT
GTACCACAAGGGATGTATTTCACCCTGAATTTTACATGGCAATTGATTTA
TCTACTACAGAAGTTGTTCACCAAATTATTTCTCCTGAAAATTCACATCC
TTGCTATTCTGTAAATTGGAACAATGAAGAAATTGGGATGACTTTTCGTA
AAGATAATCTTCAAAATGCTACGAGACTTGGACCGTTATGTTTTAAAATG
GCTTGCAatgatattgaaaagaaaaaaaaaataaatctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045264XLOC_045264Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072980-proteinTCONS_00072980-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072980-exon-scaffold_86-1491911889:1400473..1401806TCONS_00072980-exon-scaffold_86-1491911889:1400473..1401806Clytia hemisphaericaexon
TCONS_00072980-exon-scaffold_86-1510915933:1400473..1401806TCONS_00072980-exon-scaffold_86-1510915933:1400473..1401806Clytia hemisphaericaexon
TCONS_00072980-exon-scaffold_86-1575043694:1400473..1401806TCONS_00072980-exon-scaffold_86-1575043694:1400473..1401806Clytia hemisphaericaexon
TCONS_00072980-exon-scaffold_86-1491911889:1401894..1402745TCONS_00072980-exon-scaffold_86-1491911889:1401894..1402745Clytia hemisphaericaexon
TCONS_00072980-exon-scaffold_86-1510915933:1401894..1402745TCONS_00072980-exon-scaffold_86-1510915933:1401894..1402745Clytia hemisphaericaexon
TCONS_00072980-exon-scaffold_86-1575043694:1401894..1402745TCONS_00072980-exon-scaffold_86-1575043694:1401894..1402745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1400473..1402745 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96825	2.79642	1.17027	0.808023	1.42153	1.52031	2.94859	3.08374	1.16022	1.02486	0.698421	0.586942	0.888447	0.326079	1.24128	1.48509	1.32065	1.74401	0.988402	0.773722	1.47667	1.2134	5.16524	3.90704	1.05729	0.976214	1.90172	0.706247	2.03654	2.06511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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