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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072970 ID=TCONS_00072970|Name=TCONS_00072970|organism=Clytia hemisphaerica|type=transcript|length=1279bp TGATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCCAAG GATATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGAGAT GGGATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAAAAA AAACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttattct aaattTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGGATA TTATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttcttc ataCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGACCTT TATGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACATTGA ATTGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTGCCA GTGAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAACAAT ATAAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGCTAA CGGCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAAACA TCGAGCTACATCaaataaagcaagaaaaaagaCTGAAAAACTAAACCTGA GGATCTTGAAATACGAGTTATGAAATTGGAAAGAGGTAAAGCTGAGATTG TTAAAGaagttaaaaatattatatttccgAAAGAGGACGGAGTTATGTAC AAATCAGTCGCATTAAATGATCCAATTAAAAGATTCAATCATACTGTATT ACCAGCTTTATTAAGGGACGATGTCCACGGGGTATATATGACTCTGGATT TAACAAACATGAAAATTACACGTAAGTCTCAAAGACAAATTATGACTGAA GATGACGATATTCAGGCTGTTTCCTTGAATTGGAACAACAAAGAAATTGC AATGATTTCTTTAAACGATGAGGAATTCGTATTTCAAATTGCACGCAATG ATACTGTTGAAGGGAACGGTAGtgtaaaatctttgaaacatTTGGCAAGA TTTGCTGTTTTGACATCGTTCAATTATCATCAATTAATGGAAGCGAATTT GCCATCAACATTGTTTGACTATTTGGgcatagaaaaatgaaaatcgtAAG ATTACACGAAggataatttattgaaaaATTTGGCAAGATTTGCTGTTTTG ACATCGTTGAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACATT GTTTGActatttgggaattgaaaagtgaa Run BLAST on NCBI protein sequence of TCONS_00072970-protein >TCONS_00072970-protein ID=TCONS_00072970-protein|Name=TCONS_00072970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
IDDKKSWFIPPDFKAKDIQPLFIGFEPFDKDEMGFYHTGEYFLAKEDPKK TDTVRIHIIEFYKSYSKFLQRVVTVKLRSCVGYYNYEQLCFYPDVGFLLH TIERYSSDREYFTIDLYGYHIINWFEKNRNNIELCMDLKPSPDLSLTCAS EFRFLSYHNHNIIGNNIKLIISAFSQRTVDEANGPSLVSYRCLCLDFLNI ELHQIKQEKRLKN Run BLAST on NCBI transcript from alignment at scaffold_86:1391776..1399008+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072970 ID=TCONS_00072970|Name=TCONS_00072970|organism=Clytia hemisphaerica|type=transcript|length=7233bp|location=Sequence derived from alignment at scaffold_86:1391776..1399008+ (Clytia hemisphaerica) TGATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCCAAG
GATATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGAGAT
GGGATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAAAAA
AAACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttattct
aaattTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGGATA
TTATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttcttc
ataCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGACCTT
TATGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACATTGA
ATTGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTGCCA
GTGAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAACAAT
ATAAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGCTAA
CGGCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAAACA
TCGAGCTACATCaaataaagcaagaaaaaagaCTGGTAATAGAATTAGAC
AGACCGttggaaaattcttttgtttttcgatATTTTACCAAGCATAAGAT
CTATTTTGAAAGGATCGATAACAAACACAATACCATTAAGTCAACAATCT
TAGAATATGATTACTCGGGTAAATTTTTATATTCATATTCCATTGATTAT
TCCGATTCATTTGTAAAGCATTTCGAATGTATTAGAAATTCAAacttaat
atttttatatttttaccccAGAAAAACTAAACCTGAGGATCTTGAAATAC
GAGTTATGAAATTGGAAAGAGGTAAAGCTGAGATTGTTAAAGaagttaaa
aatattatatttccgAAAGAGGACGGAGTTATGTACAAATCAGTCGCATT
AAATGATCCAATTAAAAGATTCAATCATACTGTATTACCAGCTTTATTAA
GGGACGATGTCCACGGGGTATATATGACTCTGGATTTAACAAACATGAAA
ATTACACGTAAGTCTCAAAGACAAATTATGACTGAAGATGACGATATTCA
GGCTGTTTCCTTGAATTGGAACAACAAAGAAATTGCAATGATTTCTTTAA
ACGATGAGGAATTCGTATTTCAAATTGCACGCAATGATACTGTTGAAGGG
AACGGTAGtgtaaaatctttgaaacatTTGGCAAGATTTGCTGTTTTGAC
ATCGTTCAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACATTGT
TTGACTATTTGGgcatagaaaaatgaaaatcgtAAGATTACACGAAggat
aatttattgaaaaatttgacaaattgaaagttttgacaTGGTTCAATTAT
CATCAATTAATGGAAGCAAATTTGCCATCGATATTGTTTGActatttggg
aattgaaaaatgaaaattgtaagTTTACAAGAAggataatttattgaaaa
atttgacaaaNCAAATCTTTGAAACATTTGGCAAGATTTGCTGTTTTGAC
ATCGTTGAATTATCATCAATTAATGGAAGCGAATTTGCCATCAACATTGT
TTGActatttgggaattgaaaaatgaaaattgtaagTTTACAAGAAggat
aatttattgaaaatttgacaaattgaaagttttgacaTCGTTCAATTATC
ATCAATTAATGGAAGCGAATTTGCCATCGATATTGTTTGActatttggga
attgaaaatgaaaattgtaagTTTACAAGAAggataatttattgaaaatt
ttaacaaattgaaagttttgacaTCGCTCAATTATCATCAATTGATGGAA
GCGGATTTACCATCGATATTGTTTGActatttgggaattgaaaatgaaaa
ttgtaagTTTACAAGAAggataatttattgaaaattttaacaaattgaaa
gttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTACCATC
GATATTGTTTGActatttgggaattgaaaatgaaaattgtaagTTTACAA
GAAggataatttattgaaaattttaacaaattgaaagttttgacaTCGCT
CAATTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGAct
atttgggaattgaaaatgaaaattgtaagTTTACAAGAAggataatttat
tgaaaattttaacaaattgaaagttttgacaTCGCTCAATTATCATCAAT
TGATGGAAGCGGATTTACCATCGATATTGTTTGActatttgggaattgaa
aatgaaaattgtaagTTTACAAGAAggataatttattgaaaattttaaca
aattgaaagttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGAT
TTACCATCGATATTGTTTGActatttgggaattgaaaatgaaaattgtaa
gTTTACAAGAAggataatttattgaaaattttaacaaattgaaagttttg
acaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTACCATCGATATT
GTTTGActatttgggaattgaaaatgaaaattgtaagTTTACAAGAAgga
taatttattgaaaattttaacaaattgaaagttttgacaTCGCTCAATTA
TCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGActatttgg
gaattgaaaatgaaaattgtaagTTTACAAGAAggataatttattgaaaa
ttttaacaaattgaaagttttgacaTCGCTCAATTATCATCAATTGATGG
AAGCGGATTTACCATCGATATTGTTTGActatttgggaattgaaaatgaa
aattgtaagTTTACAAGAAggataatttattgaaaattttaacaaattga
aagttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTACCA
TCGATATTGTTTGActatttgggaattgaaaatgaaaattgtaagTTTAC
AAGAAggataatttattgaaaattttaacaaattgaaagttttgacaTCG
CTCAATTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGA
ctatttgggaattgaaaatgaaaattgtaagTTTACAAGAAggataattt
attgaaaattttaacaaattgaaagttttgacaTCGCTCAATTATCATCA
ATTGATGGAAGCGGATTTACCATCGATATTGTTTGActatttgggaattg
aaaatgaaaattgtaagTTTACAAGAAggataatttattgaaaattttaa
caaattgaaagttttgacaTCGCTCAATTATCATCAATTGATGGAAGCGG
ATTTACCATCGATATTGTTTGActatttgggaattgaaaatgaaaattgt
aagTTTACAAGAAggataatttattgaaaattttaacaaattgaaagttt
tgacaTCGCTCAATTATCATCAATTGATGGAAGCGGATTTGCCATCGATA
TTGTTTGACtatttggaaattgaaaaatgaaaattgtaagTTTACAAGAA
ggataatttattgaaaaatttaacaaattgaaagttttgacaTCGCTCAA
TTATCATCAATTGATGGAAGCGGATTTACCATCGATATTGTTTGActatt
tgggaattgaaaaatgaaaattgtaagTTTAGACGGTATGAACTTTTTCA
GGAAAACCTCATAGTCCCTGTTGAGGTGGCTTATTTTCGTTCCAGGGGGA
GATATGGTCGGATTCCATAGTGGTATACAAAATTCCGTCAGTAATAATTT
AATTCaaattaggaaatttttcatcttttaaattcattaaaaatacAGAA
TTTTATTCAAGCTGTTTCCTTGAATTGGAACAACGAAGAAATTGCAATAA
TGATTTCTTTAAACGATGAGGAATATCTATTTGGCTTGGGAATGAAAAGT
GAAAATCGTAAGATTACATGAaggttaatttgaaaaatttaacaaaatga
aagtttttacATCATTAAATTATCATCAATTGATGGAAGCGAAtttgcta
agggtccgagggacGAAAGTCAgacagctaggacacgcagataGAAAAAC
GTGATAGCGAATCCTTATGTTGGTTTTTATAAAaccttcgtcataacttt
tcgaattaaaaaatctttttgagtgTGAATACGTAAATTTTCACTTTTCC
ACCTTACGTACAAATTTTGCCtattttttttcgctttttcaCCGATGTAT
TATTTTGACTGTGACACTGAACATTGAATTCAATATCACTTTCCTCTATT
TTTAAGGTAAAAAGAAACAGATAACAATGTATAACAGCATTAAGAAATCA
TGGTTCATTCCACGTGAATACGAAAATAGAGATATTCCACCTTTGTTATT
GGGTAATTTTTCTGTATCAAGCACTTCAAGCTACTCCAACGAGCATGCGC
AAGGGTTCTTCCACACTGGTAAATATTATTTGATCCTacaagaagaaaag
gaagaaaatatcGTTCACGTGATCAAATTCGATATAGAAGAATTCCAATG
GGTACACAGTCGAATAATTATCAGCTTACCAAAAACTGAACTAGATGGTC
ACcgagaaaatgttttcaattcaACCAGTGGTGTATTGGTTCATATCATA
CAAACATACCCAACAAACGAACGTCATGAAACTGTAATGGATCTTTATAA
TTACAACATTGTTGATCTTTTTGACGAGCTTAATggcaaagatttaaaaa
ttccTGAATCAACTGAACCAGAATCACCACCAAGAACACCAACATTTTAT
AATCCTGAGGATTTTTCAGAACCCCAAAATTCACCAGATCTATCTTTTAT
GGCTAGTATCTTTGAAGATTCGTACAATCAAGATTCGAACGATGAATCTA
GTAGACCTACATCGTTTTTTGAATTGCCCTCAGAATCACAAAGTCAAAAT
CTAAACAGGGAACATGGTTCACCAGAGTCACTTAAAGCTGATTTAAATAG
AGATTTGCAGCATCATGattcaaaaattgatgacgaAGCATCCACTCCAG
ATCTGTCTTTGACATATGATCAATTATTCAACTCGATAACTTGTAAATAT
GCAGAATTTCTTGGCCACGAGAATCCCACTTTACTTATAAGCAGTTATTT
TACTAAGTATTATGAGAGTAACCAGGACGAGAAATACAACTATCTGGATT
TTATCAAGATACAAAAAGATCAACTTTGTCACGAGAGAAGATTGGTTATA
GATTTCGAAACCGCTGGTGGATCAGTATTTGCGAGAAGGGAATATACTaa
ggacaaaatatttttctttaaaaggtcttATATTGAAGATAGTGAAGATA
TGATAAACCTAAAGATCATTGAATGTGATTATTCCGGTAATTTCTTATAT
TCGTATGATTTGGAATACATTGAATCGTGGATGTTGTTTAATGTTGTTGA
TCTTAAACATTCAAATTACATATTTCTTTATAATGGCTATGGCGAATTAG
AGGACCTTGAATTAAGAGCTTTAAAACTGGAGAATGGGGTTCGTTTGTCa
ataaatgaaacaaaaaacttCATTCTCTCTGTGAAGGTACCAGTAGAATA
TAGAGGAAGGGACTTCAGAGTGCGTGCCCCTATCAAGAAGTTCGATCGCC
TTGTTATGCCACTTTACTGTGCCACAAAGGATGTATTTCACCCTGAATTT
TACATGGCAATTGATTTATCTACTATAGAAGTTGTTCACCAAATTATTTC
TCCTGAAAATTCACATCCTTGCTATTCTGTAAATTGGAACAATGAAGAAA
TTGGGATGACTTTTCGTAAAGATAATCTTCAAAATGCTACGAGACTTGGA
CCGTTATGTTTTAAAATGGCTTGCAATAATATTGAAAGGAAAGAAGAAAt
gaaatctttgaaatattTGGCAAGATTTGCTGTTTTAACATCGTTTACTT
ATAATGAATTATTTAAAGCAAATCTTCCATCTTCCTTATTTAATTATTTG
GGGATTGAAAACTAGTTGCTTACTGAATACAAATACATTTTCCactaata
tttgaaaaacatttgaaaaatggagGAAAAACAATAAggaaattcatcaa
aatcacCTAATATGAAGCGAACATTATTAATATTGATAGTTTTGTATCCT
TCCCGTTAAAAAATTTATATCTaggcaaaaatataaaaatgtagtgtttc
acgaaaccggccgggtgaaaaaaaaaaaattctgacccggccgcagacta
tgggttcatctatatggttcatcGTAAAGAAAATCAATCTGACCGTTCAA
ACTATCAAACGCTGTTTGGTTAGATATTttcgcttgtaaatcaagttttg
ttcgttagtagtcGATGCATTGGTGTTCAAGACTTCATACtgtttataaa
taaaagttatctttaaagttctatttcaatgatctttatagttatcaaaa
aaagcaaaacaaaatttttcccgTTCGGCCGCATGAGAGTTTTGTTCCTC
CACCCGCATTCTGGAAACactgcatttttttattttcgctctACCAAACT
ATTTTATACCCGCTATATTAagacagatattttacaaaatttataatttt
tatattaTCAAACCCAATGAATAAATTACCagattttcttacaaaaatca
gTAATCGTAAGTTTCGGTTGTTCCCCAGGGGacggggtactacccttgtc
gactgACAGGgcgctccgctgaggttcgaaaaatggaccctacgtgggac
tcgttttttaaaaaattttgccgaaatttgcgaaaaaagtgactcTGAAT
GGGACTGGAGttccaaaatttctccaaagttttaaaattttctacttttt
ccccaagtTTTCCCAAaagagggactgatttttctattttggtgttttag
caaccctacctgggactcttggaggttaaaaaaggtaccctaaccagcgg
cgcatccccgtaacccattttgccctagtatcCCCCCCCCCAGGGTTGTT
CTTAGATGTTTATAGTACGTTTCAGCAATAAACTATCATTTTCCTATTTC
AAGCCCCAGGGGCTTTTTGTGACATGTTGTATCTCGACGTGATATAATAA
TTGTCTAACTTTATTGCTTTCAACTTAGCagttattgtaaaaaaaaagga
cATTGTTTGActatttgggaattgaaaagtgaa Coding sequence (CDS) from alignment at scaffold_86:1391776..1399008+ >TCONS_00072970 ID=TCONS_00072970|Name=TCONS_00072970|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_86:1391776..1399008+ (Clytia hemisphaerica) ATTGACGACAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCCAAGGA TATACAACCACTATTCATCGGATTTGAGCCATTTGATAAAGATGAGATGG GATTTTACCACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAAAAAAA ACCGATACCGTGCGTATTCATATTATCGAATTctataaaagttattctaa attTCTTCAACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGGATATT ATAATTACGAGCAGCTTTGTTTTTATCCAGATGttggttttcttcttcat aCAATCGAACGTTATTCTAGCGACAGGGAATATTTTACTATCGACCTTTA TGGTTATCACATTATTAATTGGTTTGAAAAGAACCGGAACAACATTGAAT TGTGTATGGATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTGCCAGT GAATTTAGATTTCTAAGTTATCACAACCATAATATCATTGGAAACAATAT AAAACTTATCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGCTAACG GCCCTTCACTCGTATCATATCGATGtttatgtttggattttttAAACATC GAGCTACATCaaataaagcaagaaaaaagaCTGAAAAACTAAATTGACGA CAAGAAATCATGGTTCATTCCACCTGACTTCAAAGCCAAGGATATACAAC CACTATTCATCGGATTTGAGCCATTTGATAAAGATGAGATGGGATTTTAC CACACTGGTGAATACTTTTTAGCTAAGGAAGATCCAAAAAAAACCGATAC CGTGCGTATTCATATTATCGAATTctataaaagttattctaaattTCTTC AACGCGTTGTGACCGTTAAACTTCGTTCCTGCGTTGGATATTATAATTAC GAGCAGCTTTGTTTTTATCCAGATGttggttttcttcttcataCAATCGA ACGTTATTCTAGCGACAGGGAATATTTTACTATCGACCTTTATGGTTATC ACATTATTAATTGGTTTGAAAAGAACCGGAACAACATTGAATTGTGTATG GATCTTAAACCCTCTCCTGATTTAAGTCTGACGTGTGCCAGTGAATTTAG ATTTCTAAGTTATCACAACCATAATATCATTGGAAACAATATAAAACTTA TCATTTCAGCATTTTCTCAACGAACAGTTGATGAAGCTAACGGCCCTTCA CTCGTATCATATCGATGtttatgtttggattttttAAACATCGAGCTACA TCaaataaagcaagaaaaaagaCTGAAAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072970-exon-scaffold_86-1491911889:1391776..1392410 | TCONS_00072970-exon-scaffold_86-1491911889:1391776..1392410 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1510915933:1391776..1392410 | TCONS_00072970-exon-scaffold_86-1510915933:1391776..1392410 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1575043694:1391776..1392410 | TCONS_00072970-exon-scaffold_86-1575043694:1391776..1392410 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1491911889:1392647..1393188 | TCONS_00072970-exon-scaffold_86-1491911889:1392647..1393188 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1510915933:1392647..1393188 | TCONS_00072970-exon-scaffold_86-1510915933:1392647..1393188 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1575043694:1392647..1393188 | TCONS_00072970-exon-scaffold_86-1575043694:1392647..1393188 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1491911889:1393351..1393420 | TCONS_00072970-exon-scaffold_86-1491911889:1393351..1393420 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1510915933:1393351..1393420 | TCONS_00072970-exon-scaffold_86-1510915933:1393351..1393420 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1575043694:1393351..1393420 | TCONS_00072970-exon-scaffold_86-1575043694:1393351..1393420 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1491911889:1398977..1399008 | TCONS_00072970-exon-scaffold_86-1491911889:1398977..1399008 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1510915933:1398977..1399008 | TCONS_00072970-exon-scaffold_86-1510915933:1398977..1399008 | Clytia hemisphaerica | exon |
TCONS_00072970-exon-scaffold_86-1575043694:1398977..1399008 | TCONS_00072970-exon-scaffold_86-1575043694:1398977..1399008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1391776..1399008 + |
Blast
The following BLAST results are available for this feature:
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