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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072961 ID=TCONS_00072961|Name=TCONS_00072961|organism=Clytia hemisphaerica|type=transcript|length=1464bp
CTTGCAAATTCTTTCTGCAAACACATTATCACACAGTATGAAAGGGGGTG
TTGTGTTCCTTTTTCCTGCAGATGTCTAAATAAGCAAGCTGTGAACAGCT
GCTTCTTTGCAATACATCCGTGCTGAGGGATTTGTATTTGCGCATGTCGC
TGATGAGGGAATTATCCAATCAGATGCCGGCTCGTTGTTACGGTACCGAA
AATCTATTGATGCTGATGACATCATGATTTGGACAGATATCAAGAAAAAA
CACAGCTCACACCAGATAACATCAGACGTGTCGCTATCTGAAACGTGTCA
CGCTGCTGAATTCTTTCTATCGGACGGTCTTATCATCACTGGATCGTCTA
CCGGACAAGCTGCCTCGGTTACTGACCTTAAAGATGCCGTATCCACCGTG
TCTATTCCGGCTATAATTGGCTCCGGAATCAGCCCGGATAATGtggaaaa
tttctcaaaagcaCACGCTATGATCGTTGGTTcttatttcaagaaaaatg
ggCTATGGAGTAATGAAATTTGTATGGATAGGTTGAACTCGTTGGTTCGT
GCTGTTACACAGCTGCAAAATGAACCTCAAAGGTGAAAACCAGAGAGATA
GGAAATGAAAGCTATCTAGGTAGCTatgaatttttaaacatttttttcta
taagatcaTAATATTGATTGCATTTCGTAAATTTCATGAACAGCTCCGTG
CGGTCGATTTTAAATGAACCACGGCCAGCTATGGCGCGTTGAATTTCTTT
GGAAAGCCGGAATCACATGAAAGGTGTGTTCCTCCAATAAccattttttt
tagaaacaacAGATTCTATGTATACAAAACGCTTATAATATAAAAACGAA
CGAAATAAATAATCAATAACGGTGAATTTTCAATCGTCGATTATGTTCGT
ATCTAATAGGTGACTGCCATGGAAACCTCGCTAGATAAAATAAAAGATGA
CTTATTTTAAACGACAATATTGCATCAGCCATAAAAATCATGAttcaaga
aaacgaaagtggacAATCAATTCGGACAGTTTAAATCAATAATACGGATA
GAGGGGAAAAtcattgttttttattgatGTTCGTCGCACCTATTGAATCT
GATTAAGGAGGGGTGCTATAAACAGCTCTACATCATAAATTATAGAATAA
AACATGTTCATGTGATGCGATCTGTTTATTTGATGTCCTGACCCACCACg
ctatgaaaaatatattggtCGAGCTATCGAATCTGTTTTTTATATATGCA
ATATTTAGTATTTGATAGTTTACTTATGACGAATTTTGTATATTTCCCTC
AAATAGTAAATCCTAAAGGCAATTTATGACTATAACTTAAAAAATAGGTC
ATGGTTTACGAAAAACAAAGCCAGATACCAACCAAATAGCAATTTGAACA
TTAATCTCGTACCCTGAGCAACTTGTACCACTTTTCGATTTCACTGATGA
ACGTGATACAATCG Run BLAST on NCBI transcript from alignment at scaffold_86:1313488..1316632+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072961 ID=TCONS_00072961|Name=TCONS_00072961|organism=Clytia hemisphaerica|type=transcript|length=3145bp|location=Sequence derived from alignment at scaffold_86:1313488..1316632+ (Clytia hemisphaerica)
CTTGCAAATTCTTTCTGCAAACACATTATCACACAGTATGAAAGGGGGTG
TTGTGTTCCTTTTTCCTGCAGATGTCTAAATAAGCAAGCTGTGAACAGTA
GGTATACTTCATGTACTGTATTTCATCGTGAATATGGAACTACATGTCAT
CGTCTAATAGaggaaaattgtccaaattcCTTCTCtgttcaatatatttt
ttagtgATTGCTACATTATTTAACCTAAACTGAAGTTCATATATATAAAC
TCGCCCAAATCGATTGAAATGAGCTCATTTGGCTCGCCATTCACAAAACT
GATCTTTATCTACCTTGCCCTTGCCCTTGCCCTTGCCCTATCTATGCATG
ATCAAAGACTACAACTGGTCCGTTCTGTTAGCCTATTTCAACACTTTTGA
GTTCACTCTATAGATTAGTTCGATACGCGATATTTCGTTGAAGTTCAACT
GTTTTTAACTTTCTGGTACTTCAATGTTGTTTTTCAATGCTGTTATTTTT
ACTATTTGTATACTCTGCCCTAATCTTCACTTATTCACGGAATCTGGTAA
ATGAACGGTCTGAATTTCAGAATGGCCAAGGAGTAGCCAAAATGTTTCGA
ATTTGTTTGATGTAGAAACTTCTTACAAGGAAAACTTACTAAAAGATTGA
AATTATTCAAAGATTTGCTTTTCCTCATTTATACAGGCTGCTTCTTTGCA
ATACATCCGTGCTGAGGGATTTGTATTTGCGCATGTCGCTGATGAGGGAA
TTATCCAATCAGATGCCGGCTCGTTGTTACGGTACCGAAAATCTATTGAT
GCTGATGACATCATGATTTGGACAGATATCAAGAAAAAACACAGGTTGGT
TAAAGAACAAAGaacataccttatcggccctttttacattggcccttatt
ggcgttatttttgggctcttGGCGTAATAAAGGCCGGTGTAAAAACGGCC
GATAAGGTAGCCTTTTTCAGTTGCAATTCGATTCAGTTTCTTGCACACTT
TTTGTGTTTGACTTTAAGTTCAGGAATTGCATGACCACGTGATTAATTTC
GCCTGATGAAATAGCCAATCATAGTGGATACTGTTCAACCTTACAATGTG
ACCGACTCCTGTATCATTTAGTCATTTTGAAAGATTAAGGGAGACGAAGT
ATATGTCAAGTATTGTGCTACATTGACATATAAAAAACGAGTGATTAATA
TCATTTGATACAGTGTCCAAACTTTTCCTATCATATTCATACGAAAGATT
TCTGATTACACCCAATTTTTCCATCACACTAATATATTGGATTATATCCA
TCAAAAATCtgtgaaaattaataacaacacaaaaaaaaactaggtcaagt
tttttctgatataatgttttgattttgatgtctGCAACTATAGAAACGTC
TTcttgaatttgatattttgttaaaattcaaaacataacTTTTACAGCAT
TCTTACTTTCCTTCCCAGCTTCACTTTTTATACTTTTAATCATAAAAATG
CTAAACTATACCAACAACGGTATCATAGTTTTGTTTCTGATCTTGACATT
CTTATCAACGTACCTTGCAATATTTTGCTAAGTCAGCATAAGAGAATGAT
ATAACCGAACTATATATATACTTCACTACATACATACAGTCATAATGtcg
ttttaagccaatcaaaataattgaaattttttgaaagtaagCTGGTGTTT
TCTGAGAGCAGAAAGCATTTCATTTTGTTCTTCCGTAGTCAACAATTAAT
TCCTATAGTGTACTTTAATACTGTAGTCTCTTTTGACTTCTATCCTCTAT
ACATGAGTTTGTTCCAATAATATTGGTCGTTCGTCAACACTGTAATTGTT
ATGACGCATTAACACAAGATTATAAACTGATACCTCACCTTCCAACTCAG
TGATAGTTATCTCATgaattcttatattttttatagCTCACACCAGATAA
CATCAGACGTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTCTTTCTA
TCGGACGGTCTTATCATCACTGGATCGTCTACCGGACAAGCTGCCTCGGT
TACTGACCTTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTATAATTG
GCTCCGGAATCAGCCCGGATAATGtggaaaatttctcaaaagcaCACGCT
ATGATCGTTGGTTcttatttcaagaaaaatgggCTATGGAGTAATGAAAT
TTGTATGGATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGCTGCAAA
ATGAACCTCAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCTATCTAG
GTAGCTatgaatttttaaacatttttttctataagatcaTAATATTGATT
GCATTTCGTAAATTTCATGAACAGCTCCGTGCGGTCGATTTTAAATGAAC
CACGGCCAGCTATGGCGCGTTGAATTTCTTTGGAAAGCCGGAATCACATG
AAAGGTGTGTTCCTCCAATAAccattttttttagaaacaacAGATTCTAT
GTATACAAAACGCTTATAATATAAAAACGAACGAAATAAATAATCAATAA
CGGTGAATTTTCAATCGTCGATTATGTTCGTATCTAATAGGTGACTGCCA
TGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACGACAATA
TTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtggacAATCA
ATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtcattgttt
tttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGGTGCTAT
AAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGTGATGCG
ATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatatattggt
CGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTTGATAGT
TTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCCTAAAGG
CAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAAAACAAA
GCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACCCTGAGC
AACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072961-exon-scaffold_86-1491911889:1313488..1313584 | TCONS_00072961-exon-scaffold_86-1491911889:1313488..1313584 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1510915933:1313488..1313584 | TCONS_00072961-exon-scaffold_86-1510915933:1313488..1313584 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1575043694:1313488..1313584 | TCONS_00072961-exon-scaffold_86-1575043694:1313488..1313584 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1491911889:1314174..1314331 | TCONS_00072961-exon-scaffold_86-1491911889:1314174..1314331 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1510915933:1314174..1314331 | TCONS_00072961-exon-scaffold_86-1510915933:1314174..1314331 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1575043694:1314174..1314331 | TCONS_00072961-exon-scaffold_86-1575043694:1314174..1314331 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1491911889:1315424..1316632 | TCONS_00072961-exon-scaffold_86-1491911889:1315424..1316632 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1510915933:1315424..1316632 | TCONS_00072961-exon-scaffold_86-1510915933:1315424..1316632 | Clytia hemisphaerica | exon |
| TCONS_00072961-exon-scaffold_86-1575043694:1315424..1316632 | TCONS_00072961-exon-scaffold_86-1575043694:1315424..1316632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1313488..1316632 + |
Blast
The following BLAST results are available for this feature:
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