TCONS_00072960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072960
Unique NameTCONS_00072960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072960 ID=TCONS_00072960|Name=TCONS_00072960|organism=Clytia hemisphaerica|type=transcript|length=1947bp
CTTTATGTTAAATGaattctgtttaaagattttcttattttatttattgt
gATTTTTAGGTTGTACCTACAGTATACCTTCTTTTCgattgatttatatt
tctttttcatctttttcatgtaataaaaattgagcaaagcaaaaaaaaaa
agatataaccTACCAATGAAATATACACATGGTGAAACGATGGAGTTGAT
TTGATCATACATTTATTGGACATTGGTtgcttgaagaaaaaaacatggag
AAATTCTTGCGAATCTTCTCAAAGACACCATCACTCATTGGTATGATTCA
CGTCCGGGCCTTACCAGGTACACCTCTTTACAAATCTGGATCGTTTGACA
ACATTGTTGACAAAGCAAAAGAGGAAGCTCAAGTACTTATTGAGGCTGGC
ATTGATGGTTTAATGATTGAGAATATGCACGATATCCCATACATGAATCG
ATCTGTTGGACCAGAAATCATATCATCCATGACAGTGATTAGTCATGAAG
TAAAAAACATTGCCAAAACAATTCCTTGTGGTATACAAATATTGTCTGGT
TGTAACCAAGCTGCTCTTGCTGTTGCTAAGGCTGCTTCTTTGCAATACAT
CCGTGCTGAGGGATTTGTATTTGCGCATGTCGCTGATGAGGGAATTATCC
AATCAGATGCCGGCTCGTTGTTACGGTACCGAAAATCTATTGATGCTGAT
GACATCATGATTTGGACAGATATCAAGAAAAAACACAGCTCACACCAGAT
AACATCAGACGTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTCTTTC
TATCGGACGGTCTTATCATCACTGGATCGTCTACCGGACAAGCTGCCTCG
GTTACTGACCTTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTATAAT
TGGCTCCGGAATCAGCCCGGATAATGtggaaaatttctcaaaagcaCACG
CTATGATCGTTGGTTcttatttcaagaaaaatgggCTATGGAGTAATGAA
ATTTGTATGGATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGCTGCA
AAATGAACCTCAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCTATCT
AGGTAGCTatgaatttttaaacatttttttctataagatcaTAATATTGA
TTGCATTTCGTAAATTTCATGAACAGCTCCGTGCGGTCGATTTTAAATGA
ACCACGGCCAGCTATGGCGCGTTGAATTTCTTTGGAAAGCCGGAATCACA
TGAAAGGTGTGTTCCTCCAATAAccattttttttagaaacaacAGATTCT
ATGTATACAAAACGCTTATAATATAAAAACGAACGAAATAAATAATCAAT
AACGGTGAATTTTCAATCGTCGATTATGTTCGTATCTAATAGGTGACTGC
CATGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACGACAA
TATTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtggacAAT
CAATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtcattgt
tttttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGGTGCT
ATAAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGTGATG
CGATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatatattg
gtCGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTTGATA
GTTTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCCTAAA
GGCAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAAAACA
AAGCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACCCTGA
GCAACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATCG
Run BLAST on NCBI

transcript from alignment at scaffold_86:1309382..1316632+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072960 ID=TCONS_00072960|Name=TCONS_00072960|organism=Clytia hemisphaerica|type=transcript|length=7251bp|location=Sequence derived from alignment at scaffold_86:1309382..1316632+ (Clytia hemisphaerica)
CTTTATGTTAAATGaattctgtttaaagattttcttattttatttattgt
gATTTTTAGGTTGTACCTACAGTATACCTTCTTTTCgattgatttatatt
tctttttcatctttttcatgtaataaaaattgagcaaagcaaaaaaaaaa
agatataaccTACCAATGAAATATACACATGGTGAAACGATGGAGTTGAT
TTGATCATACATTTATTGGACATTGGTtgcttgaagaaaaaaacatggag
AAATTCTTGCGAATCTTCTCAAAGACACCATCACTCATTGGTATGATTCA
CGTCCGGGCCTTACCAGGTAGGTTATATCTTTTTTGGCGCATACGGTATA
AACGAACTTGCCTTCCTGCTAATTAGACGGGTCCCCCAAGAACCGGATTG
CACAATTATCCAAGTTTTTCATTTGTTCATGATTTTTGTGAATCTTTTGA
AGATTGCCTCCTTCTCAATTAGAAGGGGGTTGGGCCCTTCAAGAATCGGA
TTCAGTTGTTCATGTTTGTCCTtgtaaattatttgaaaattatttcatgG
TTACTTTCACTTTTCCTTTTAacagaatttgaaatttcaaatggtAAAAC
CGATTTAATTTAGAGTCATCATTGAGGTCTTAATTTCTTCCCACTATTCA
GGTACACCTCTTTACAAATCTGGATCGTTTGACAACATTGTTGACAAAGC
AAAAGAGGAAGCTCAAGTACTTATTGAGGCTGGCATTGTAAGTAGAATCA
TATTTTTATGTCATTGCTATTAACGGGATGCTCAAAGGTGCCCTCAAAAC
CAGAAAAATCTAGACCTCAGTTGAATTTAGTGAAAATCCAGGGACCTCTT
GAAACCAGACACAAATCCAAGGCGGGCCTCTTTAAATTTAAAGTCAGCAG
GGTTTTCATCATGGGTTACAAATCTTTCCTCGAATAACCCAACGAATAAC
CCACAAGGAAATTAGGTATTACATGTTTGTTTCTTTAGGATGGTTTAATG
ATTGAGAATATGCACGATATCCCATACATGAATCGATCTGTTGGACCAGA
AATCATATCATCCATGACAGTGATTAGTCATGAAGTAAAAAACATTGCCA
AAACAATTCCTTGTGGTATACAAATATTGTCTGGTTGTAACCAAGCTGCT
CTTGCTGTTGCTAAGGTgacattttttcttcatttgtcttgatgtttttt
tctgaacAAGAAAgtatttggattttttcttcgaTGGAAGACCCTAGAGT
TGCTCTGGCATTTTGTTATTCTTAGCAGTGTGATTTTTTTCGAATCAGTT
AGCCTTCACAAATCTTTACCCCATTCAAGCCCAAATAATTCATAATGCCG
GGAACTTATTCAACCATTACCAAACCATGGTATGCAGCATGAACTGGAAG
TCCCGTACTCAGGATGCACGATTTTTTCTCCATAGTATCCTTAAGGGAAC
AACTTTGGGATCCACAAAATTAAGGAAAAGGAAGGGGGAAGCTTTTGTTA
AGATCAGTAACACTTCCAAAAGGAAggaatcaaattttttaaagctaAGG
GGTTTCTTTCGTGTTTTCTTTTTGCGATTAGCTTggaatttgcttttttt
tcaatttgctattttttcaaacttattaCGTTattcttcaggtaggtcca
tttagcatgtagcttgtttgctttaaatttccaaaatGCTTTCTAAGGAA
CACAAAATTTCTATGGCTCTAATCATTTTTTGAAGTTACCTGCGTTTTTC
ACAGGCCGACACTTTTACAGCTCGAACGTTCTGTGTTTTGTTGGTATTTA
CATAAGAGGAGTGCATAAGGCATGTCTGTTTGGACAGTTTTTTCCCGAGC
AAAAAAATCTGCAAGCAGCAGTTTGCATTCAATTATGGACAGAATGCTTT
ATTAAGCTAATCTTTAAAAGCCTATCATTAGTGGGTTATATAATTGCTTT
CAATTAGTTTCTCTGTGTTCCTTGTTGATTTAACAGTCATGTGAGAAGGA
ACTTGTAATTAAACGTCAGGAAATGTGCAATTATCTTGCCAGATTTTGTA
ATTAGCTGTCATTTTAGATTGCCAGTGCCAATATACTGtattgtgaaatt
ttttaaagcGAATTGCAAAGCTTATATTTCTAAAGGCCTTTACTTCAATG
TTTTGTCCAAACAAACTCCCTTTGTATTTATATTCCTTTGAAGAATAAAA
CCATCTTTCAAAATCTACGTTGGgctatttccagaaaaaaacgtACACAG
GGGCTGGAGGGTATGTTGGTCAGGAGATCCAGTTGTATTTAAAAGATTGT
CAAAAACTCATTTTCCACGGGGTAAATTCACAATGCCCTGGGTTATAATT
AGTGTCCAGCAAAGATTTAttttatacactggataaacgactcataaaac
gatggagagcgctcattgtattttcattgtttcagaaaacaatggatgtt
ctagctttgtccgcaaaggacaactgtcatggctcgaagatgtctgattt
ttgaaaatgtttatcagtcttatttttaaaaggttctctagctctttctt
tttgtacatttacagaaaaaaaagtttgaaagtaaggctagcatttcGAG
CTGGAtgcatttgtgaaatctaatgtgaaaaaaacatcattagacaagaa
attcagacaaaatgcttataatgacacaaaattttcaattggaaatatct
ttccaagactgtccccagaacaGCTGAAATTAATATACaaaagacttgag
tgtcttgtctccactgtggtatgaaaatcctttggaggcacgtggtggca
aggtggtttttttttaggttaaagtttgaaaatttccggtgtcaacattc
aatttcttatacacaacacgtcttttgcatctttctcacagcttgaaacg
tcataacgaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagg
gaaggagagtgaacaataatatcattactgcggacatagctagtacacga
gaaatcggcaaaaatctgttacttgtatatccagtgtataataaatcctt
tcTGTCCAGAAAGTAGATTTGATGCTTGCCCGTAAAAGTCGTGTCAAGAG
GATGAAAAATCCAGATGTCTCGGTGTACTTGTACTTGAGCCCACTAAAAA
CTTTTATTGTAATCACAATAAAAAAGTGTAAGACCAATCTCTCTTTAAAG
TCTCGTAAAAAGCCTTGCTAAGAGTTATATTCGAAACTTTCTGAGCCTGC
TCGTCTTTGCCCTTTTGATTAATGTTGATCATGATTTTAATAGATTACTC
ATAAACAATCCATCAAAGctgttttctttataaattGATTGAGTATTCAA
AACTAAGGATGTTTAAATCAATAGACCAGAAGTACATTATAATTGGTTTT
TTATCTATGTTTTGCAAAAGTGCAACGTTCTTTTCCGCTCCTTTGCTATA
CTAAGCTTGACGTTATGCAATAGCCAGTATTTGATTCGCAGTGATTTACC
AAGCATAATAACGCCTTTAAGCCTTTAGATAGTCATAAACAGGCTTCATC
GATTTAAATGTTTTAATTAAACTTTGTtgtcagattttcaaaaaagattc
aaTAATTGATATTTAATTGATTACCGCCCTTACTGTGCATTATCCTATTG
TTTTTCTAATCCCCTATTAAAATGAAAGGGATAGATGAAATGTCATGATA
GATTCAATAGGGTAAACCTCTTTTAAATACTTCATGCTTCAAAAAGGTGC
AGTGTTTGTTTTAGGCCACTTTTAAGCAAAACTCAGTTATGCTTCATTGT
AAGAGACTTGCAAATTCTTTCTGCAAACACATTATCACACAGTATGAAAG
GGGGTGTTGTGTTCCTTTTTCCTGCAGATGTCTAAATAAGCAAGCTGTGA
ACAGTAGGTATACTTCATGTACTGTATTTCATCGTGAATATGGAACTACA
TGTCATCGTCTAATAGaggaaaattgtccaaattcCTTCTCtgttcaata
tattttttagtgATTGCTACATTATTTAACCTAAACTGAAGTTCATATAT
ATAAACTCGCCCAAATCGATTGAAATGAGCTCATTTGGCTCGCCATTCAC
AAAACTGATCTTTATCTACCTTGCCCTTGCCCTTGCCCTTGCCCTATCTA
TGCATGATCAAAGACTACAACTGGTCCGTTCTGTTAGCCTATTTCAACAC
TTTTGAGTTCACTCTATAGATTAGTTCGATACGCGATATTTCGTTGAAGT
TCAACTGTTTTTAACTTTCTGGTACTTCAATGTTGTTTTTCAATGCTGTT
ATTTTTACTATTTGTATACTCTGCCCTAATCTTCACTTATTCACGGAATC
TGGTAAATGAACGGTCTGAATTTCAGAATGGCCAAGGAGTAGCCAAAATG
TTTCGAATTTGTTTGATGTAGAAACTTCTTACAAGGAAAACTTACTAAAA
GATTGAAATTATTCAAAGATTTGCTTTTCCTCATTTATACAGGCTGCTTC
TTTGCAATACATCCGTGCTGAGGGATTTGTATTTGCGCATGTCGCTGATG
AGGGAATTATCCAATCAGATGCCGGCTCGTTGTTACGGTACCGAAAATCT
ATTGATGCTGATGACATCATGATTTGGACAGATATCAAGAAAAAACACAG
GTTGGTTAAAGAACAAAGaacataccttatcggccctttttacattggcc
cttattggcgttatttttgggctcttGGCGTAATAAAGGCCGGTGTAAAA
ACGGCCGATAAGGTAGCCTTTTTCAGTTGCAATTCGATTCAGTTTCTTGC
ACACTTTTTGTGTTTGACTTTAAGTTCAGGAATTGCATGACCACGTGATT
AATTTCGCCTGATGAAATAGCCAATCATAGTGGATACTGTTCAACCTTAC
AATGTGACCGACTCCTGTATCATTTAGTCATTTTGAAAGATTAAGGGAGA
CGAAGTATATGTCAAGTATTGTGCTACATTGACATATAAAAAACGAGTGA
TTAATATCATTTGATACAGTGTCCAAACTTTTCCTATCATATTCATACGA
AAGATTTCTGATTACACCCAATTTTTCCATCACACTAATATATTGGATTA
TATCCATCAAAAATCtgtgaaaattaataacaacacaaaaaaaaactagg
tcaagttttttctgatataatgttttgattttgatgtctGCAACTATAGA
AACGTCTTcttgaatttgatattttgttaaaattcaaaacataacTTTTA
CAGCATTCTTACTTTCCTTCCCAGCTTCACTTTTTATACTTTTAATCATA
AAAATGCTAAACTATACCAACAACGGTATCATAGTTTTGTTTCTGATCTT
GACATTCTTATCAACGTACCTTGCAATATTTTGCTAAGTCAGCATAAGAG
AATGATATAACCGAACTATATATATACTTCACTACATACATACAGTCATA
ATGtcgttttaagccaatcaaaataattgaaattttttgaaagtaagCTG
GTGTTTTCTGAGAGCAGAAAGCATTTCATTTTGTTCTTCCGTAGTCAACA
ATTAATTCCTATAGTGTACTTTAATACTGTAGTCTCTTTTGACTTCTATC
CTCTATACATGAGTTTGTTCCAATAATATTGGTCGTTCGTCAACACTGTA
ATTGTTATGACGCATTAACACAAGATTATAAACTGATACCTCACCTTCCA
ACTCAGTGATAGTTATCTCATgaattcttatattttttatagCTCACACC
AGATAACATCAGACGTGTCGCTATCTGAAACGTGTCACGCTGCTGAATTC
TTTCTATCGGACGGTCTTATCATCACTGGATCGTCTACCGGACAAGCTGC
CTCGGTTACTGACCTTAAAGATGCCGTATCCACCGTGTCTATTCCGGCTA
TAATTGGCTCCGGAATCAGCCCGGATAATGtggaaaatttctcaaaagca
CACGCTATGATCGTTGGTTcttatttcaagaaaaatgggCTATGGAGTAA
TGAAATTTGTATGGATAGGTTGAACTCGTTGGTTCGTGCTGTTACACAGC
TGCAAAATGAACCTCAAAGGTGAAAACCAGAGAGATAGGAAATGAAAGCT
ATCTAGGTAGCTatgaatttttaaacatttttttctataagatcaTAATA
TTGATTGCATTTCGTAAATTTCATGAACAGCTCCGTGCGGTCGATTTTAA
ATGAACCACGGCCAGCTATGGCGCGTTGAATTTCTTTGGAAAGCCGGAAT
CACATGAAAGGTGTGTTCCTCCAATAAccattttttttagaaacaacAGA
TTCTATGTATACAAAACGCTTATAATATAAAAACGAACGAAATAAATAAT
CAATAACGGTGAATTTTCAATCGTCGATTATGTTCGTATCTAATAGGTGA
CTGCCATGGAAACCTCGCTAGATAAAATAAAAGATGACTTATTTTAAACG
ACAATATTGCATCAGCCATAAAAATCATGAttcaagaaaacgaaagtgga
cAATCAATTCGGACAGTTTAAATCAATAATACGGATAGAGGGGAAAAtca
ttgttttttattgatGTTCGTCGCACCTATTGAATCTGATTAAGGAGGGG
TGCTATAAACAGCTCTACATCATAAATTATAGAATAAAACATGTTCATGT
GATGCGATCTGTTTATTTGATGTCCTGACCCACCACgctatgaaaaatat
attggtCGAGCTATCGAATCTGTTTTTTATATATGCAATATTTAGTATTT
GATAGTTTACTTATGACGAATTTTGTATATTTCCCTCAAATAGTAAATCC
TAAAGGCAATTTATGACTATAACTTAAAAAATAGGTCATGGTTTACGAAA
AACAAAGCCAGATACCAACCAAATAGCAATTTGAACATTAATCTCGTACC
CTGAGCAACTTGTACCACTTTTCGATTTCACTGATGAACGTGATACAATC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045261XLOC_045261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072960-exon-scaffold_86-1491911889:1309382..1309698TCONS_00072960-exon-scaffold_86-1491911889:1309382..1309698Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1510915933:1309382..1309698TCONS_00072960-exon-scaffold_86-1510915933:1309382..1309698Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1575043694:1309382..1309698TCONS_00072960-exon-scaffold_86-1575043694:1309382..1309698Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1491911889:1310033..1310118TCONS_00072960-exon-scaffold_86-1491911889:1310033..1310118Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1510915933:1310033..1310118TCONS_00072960-exon-scaffold_86-1510915933:1310033..1310118Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1575043694:1310033..1310118TCONS_00072960-exon-scaffold_86-1575043694:1310033..1310118Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1491911889:1310370..1310546TCONS_00072960-exon-scaffold_86-1491911889:1310370..1310546Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1510915933:1310370..1310546TCONS_00072960-exon-scaffold_86-1510915933:1310370..1310546Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1575043694:1310370..1310546TCONS_00072960-exon-scaffold_86-1575043694:1310370..1310546Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1491911889:1314174..1314331TCONS_00072960-exon-scaffold_86-1491911889:1314174..1314331Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1510915933:1314174..1314331TCONS_00072960-exon-scaffold_86-1510915933:1314174..1314331Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1575043694:1314174..1314331TCONS_00072960-exon-scaffold_86-1575043694:1314174..1314331Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1491911889:1315424..1316632TCONS_00072960-exon-scaffold_86-1491911889:1315424..1316632Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1510915933:1315424..1316632TCONS_00072960-exon-scaffold_86-1510915933:1315424..1316632Clytia hemisphaericaexon
TCONS_00072960-exon-scaffold_86-1575043694:1315424..1316632TCONS_00072960-exon-scaffold_86-1575043694:1315424..1316632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1309382..1316632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39576	2.92487	2.21626	0	9.84081	5.86656	6.82202	9.6171	6.34816	5.23549	4.70987	3.99231	2.79326	2.68053	1.63137	2.68375	5.77909	4.0273	0.0010714	0.452294	3.59203	3.98089	2.66512	3.0606	1.57617	3.2823	5.12221	3.56357	4.07354	1.9368
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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