TCONS_00072955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072955
Unique NameTCONS_00072955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072955 ID=TCONS_00072955|Name=TCONS_00072955|organism=Clytia hemisphaerica|type=transcript|length=540bp
ATGCGTTAGTCCGAATGTCAAGGAAACAACTGTCATCACTTCACTGGCAA
CTTCTCTTAATCAATTTTCGTGGGAATTATCAGCATTCCGTTACTTCGGT
GATTCAAATACTGTTGTGATCGTGTGTGAAGTTTTAGTTTGTAAAAACGA
TGCATTTTGGAGGTTGAGTGAAGAATGCAAAAGATGTGGGCAAACTTCCA
ATAGAAGAAAACGGAGGCTAAATGATGAAGAGGAAAACCAGGCTGTTGTT
CTACAGAAAAGAACAGTTTCTTCAGAACCAATCTATATCATTGAGAAGCC
ACAGAGACAAGaACAAAAagcacgtcaaaaagacaatggAGCGATACTGA
AACCAACTGGCATAGCAATCATTGCAATTTTGGCAACTATCGTCCTCGTT
ATGGGTGCAGTTCTTATCAAGAAACGATTGTAAATTGATGtgaatcaaat
tcaaaaaagttcacttttacttttacactatatttttatataaaatcaaa
atgttatttttagggaatttattttgaaacagAGGAGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_86:1253913..1254905+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072955 ID=TCONS_00072955|Name=TCONS_00072955|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at scaffold_86:1253913..1254905+ (Clytia hemisphaerica)
ATGCGTTAGTCCGAATGTCAAGGAAACAACTGTCATCACTTCACTGGCAA CTTCTCTTAATCAATTTTCGTGGGAATTATCAGCATTCCGTTACTTCGGT GATTCAAATACTGTTGTGATCGTGTGTGAAGTTTTAGTTTGTAAAAACGA TGCATTTTGGAGGTTGAGTGAAGAATGCAAAAGATGTGGGCAAACTTCCA ATAGAAGAAAACGGAGGCTAAATGATGAAGAGGAAAACCAGGCTGTTGTT CTACAGAAAAGAACAGTTTCTTCAGAACCAATCTATATCATTGAGAAGCC ACAGAGACAAGGTACAGTAAAggaaaatttccatttttccaattAGTGCT ACAAAATTGTGTATTGTAAAACTGCTATGGttattctttcaaattttttc tataTAAGCCACTAAAAGATTTCCATTTAAGACTCCGAACTGAATTTTCT CTGAAACGCCATAGATCTGTTCAATTAGTGTGCAAagtcgaaattcacgc aaactgGGTCCgtagtatattttttttcaatttgataaGAACCATCATTC TAGCTAAGTTCCAGGATTGTTTACTGATGACACTGACTGTCACTTTAAta gaggaagaaattttggcggaaagaaaattcgGTGGGTTTGGCGGAAGTCC GCAAAATTCAATTCCTGCTTAAATTAATTTTTGCCTTCAAATTTTCCGGC AATCCGTCAAATTagattcaaattaaattttttttggatcacacaccaaa ttaaatttttctagaACAAAAagcacgtcaaaaagacaatggAGCGATAC TGAAACCAACTGGCATAGCAATCATTGCAATTTTGGCAACTATCGTCCTC GTTATGGGTGCAGTTCTTATCAAGAAACGATTGTAAATTGATGtgaatca aattcaaaaaagttcacttttacttttacactatatttttatataaaatc aaaatgttatttttagggaatttattttgaaacagAGGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045257XLOC_045257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072955-exon-scaffold_86-1491911889:1253913..1254223TCONS_00072955-exon-scaffold_86-1491911889:1253913..1254223Clytia hemisphaericaexon
TCONS_00072955-exon-scaffold_86-1510915933:1253913..1254223TCONS_00072955-exon-scaffold_86-1510915933:1253913..1254223Clytia hemisphaericaexon
TCONS_00072955-exon-scaffold_86-1575043694:1253913..1254223TCONS_00072955-exon-scaffold_86-1575043694:1253913..1254223Clytia hemisphaericaexon
TCONS_00072955-exon-scaffold_86-1491911889:1254677..1254905TCONS_00072955-exon-scaffold_86-1491911889:1254677..1254905Clytia hemisphaericaexon
TCONS_00072955-exon-scaffold_86-1510915933:1254677..1254905TCONS_00072955-exon-scaffold_86-1510915933:1254677..1254905Clytia hemisphaericaexon
TCONS_00072955-exon-scaffold_86-1575043694:1254677..1254905TCONS_00072955-exon-scaffold_86-1575043694:1254677..1254905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1253913..1254905 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.209042 0.577469 0.237461 0 0.023049 0.413404 0 0 0 0 0 6.21589 4.18615 7.09028 16.9725 1.47812 1.85528 12.3293 9.51336 7.87782 8.27598 4.31825 4.08907 7.53686 7.04466 0.220299 0.275908 1.69798 3.03451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top