TCONS_00072953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072953
Unique NameTCONS_00072953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072953 ID=TCONS_00072953|Name=TCONS_00072953|organism=Clytia hemisphaerica|type=transcript|length=1037bp
ggtcccaagggaccatataatgagaaaataaaataaaaacccatatttac
tacttgtaaGGGTTGATGCAAAAAAGCCCTTTTCGCCGCCGGACTAATAC
ACTATCTTCAATTATGATCGAATCGATAATTCCGGCTATGACAATATTGG
TTTTGCTGAACCTGACGGGTCATTCGCTTGTAGAATGACCGAAAACTTTG
ACCTCAATAGAAGTCGACTAACAACATCTTCAAATGTTGGGTCACCAGGG
AAATTCATTTTCTTATTAACAAACTGTAACTTAGAAAAAGCATCTATTCC
ATTTGGTCCACAATTTGGAGATCAATTTGTACAAGCTGGTGACGATGTTG
CAACTTGCTTTTCGTCATTTTCGAAAgaatttccattgttttcaacaGCT
AACAGATCCAAACTTTGTATAAGTAGTAACGGATACATCACTGTCGACCA
ACCAAAAACCAGCGCAAAAGCTTCCTTAACTTCATCTTATCCAGTGCTTG
TTCCATTTAATTACGATATGAGAAGTCTTGGTAACAACATTCTGTACCGT
ACCACTAAAGATCAAAATATATTGAATCTTGTTGACAGAGATATCTCACT
TTTAAAATCTGTGTCGTCCTTCAAATCAAAAGAAGCAATCGTTGTAACAT
ACAATAACGTTCCTTACTACGAAATCCGAAACATCTTATTCCGTTATCAA
GTCGTCATAGCTACGGATTACAAAAACACATACACTATTTTCAATTATGA
TCGAATTGATAGATCTGGTTATCACAACATTGGTTTTTCTGAACCATCTG
CGTGTAATAAATCGATAAATGTTCGTTTCAATCTTACTAAAAGTAATCTG
ACAACTAATTCGAATGTTGATGTTCCTGGGAAGTTTGTCTTCTTGTTAAC
AAAGTGCAATAAAGGTAAGAGAATAACGGAAAGTTGACGAAATTTAAGCC
ATTTAAGCTCTAGTTAAGACGGCAGACTTTCCGCCCTACATATTCTAACC
cttattctaattgtgaattaaagtgggcaaAAAGTTG
Run BLAST on NCBI

protein sequence of TCONS_00072953-protein

>TCONS_00072953-protein ID=TCONS_00072953-protein|Name=TCONS_00072953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MTENFDLNRSRLTTSSNVGSPGKFIFLLTNCNLEKASIPFGPQFGDQFVQ
AGDDVATCFSSFSKEFPLFSTANRSKLCISSNGYITVDQPKTSAKASLTS
SYPVLVPFNYDMRSLGNNILYRTTKDQNILNLVDRDISLLKSVSSFKSKE
AIVVTYNNVPYYEIRNILFRYQVVIATDYKNTYTIFNYDRIDRSGYHNIG
FSEPSACNKSINVRFNLTKSNLTTNSNVDVPGKFVFLLTKCNKGKRITES
Run BLAST on NCBI

transcript from alignment at scaffold_86:1248985..1251356+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072953 ID=TCONS_00072953|Name=TCONS_00072953|organism=Clytia hemisphaerica|type=transcript|length=2372bp|location=Sequence derived from alignment at scaffold_86:1248985..1251356+ (Clytia hemisphaerica)
ggtcccaagggaccatataatgagaaaataaaataaaaacccatatttac tacttgtaaGGGTTGATGCAAAAAAGCCCTTTTCGCCGCCGGACTAATAC ACTATCTTCAATTATGATCGAATCGATAATTCCGGCTATGACAATATTGG TTTTGCTGAACCTGACGGGTCATTCGCTTGTAGAATGACCGAAAACTTTG ACCTCAATAGAAGTCGACTAACAACATCTTCAAATGTTGGGTCACCAGGG AAATTCATTTTCTTATTAACAAACTGTAACTTAGAAAAAGGTAATTCTGC TTTATATATTGGTTAAGAAATTTAATCAGGAGACTTATATAGACTCAACG AACAGCGAATTTCGCCGATCCAAGTAACGATAAGAATTCACATGTCTAAA AATCGGTTTGGCTTCTCTCAAGTACATTATTCACGCTAATCAACGccggc ctagaatctagaatTCGCCGGCGTTTATTTTCCATTCGCTAGCCTAtcag aaacaaaacaaaacacatGGGCTAAGTATAAACTGCAAATATTTTGGACA AGACTTTATTTAAgacaaatgttttaaattttgctgcTGCGTGTAGTACG CCGAAAATATGAACACCTTTTTTCATCCTAACAAATCAAGTGAAATAAGA TCTTTTTCAGTTTTACGATCTGTTACGATTACTTATCTTTCAATTTATCT TTTAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTTGTACA AGCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAgaatttc cattgttttcaacaGCTAACAGATCCAAACTTTGTGTAAGTATAATATTC GTTAACAAATTTTCCGCCAATGTCAGTTTCCCATACTGTAGGCTCTTCAA AACTATTTTCCTTGTTTGTTAAGAGTAAGTCATATAACTATTGTCAGAAG ATAGAAACTCACTTTTTAGTCATATATCTAATTAATTTAGCTGACCCTTA TTCAATCTAAAAataccttaaccctattcgtactaagggtgaaactaatg ttaatagctcctgaaataatagagcttttggcatgaaattttttgtaaat tcctaaaactttaatttagcttcgaaataaaaaaatttgaccatCTAGAA ATTTTCACACCTTAAACATGATggcatttctgacagtaaggtgtcacgaa aattgacacatttccaatacaaatttatttttatgtcaaatatatcgttt aaaccgtaattttttgaatatttaggataaaataggCATTTAGATtcagg gaacttttttcttaaaCCCTTGTTTGTTTGtacaataactttttataaga acaaaggaaattttcggtttttgctcactttgggcacgATGAATTTCGTC ATCAAAAAGATTTAGGATACCTTATAATGACAAGGATCTGGTGTGtcaaa ttttatccaaaaaataccaactagatcaaaagttaagtgGTACAGGAAAA CCCCCCCTTAGTTTTGAACCACCCCTAAAAGCCAattatgaatagggtta aacatAAAACAACGATCTTTCAAAATCATACCTTGAAGGagctaattttg gtgaattttgacAAAACTTTTAGTCCAAGATTGAGATTAGTTCGAATGCC TCTCATCACCCATAGAGAAAAACTACGTAGAAGTTTATATAAAAGGAAAA TGAGTTGTTACTAGAACGTTTGTTTTGAATACTTATTCTTTGTTTGATAC TAGATAAGTAGTAACGGATACATCACTGTCGACCAACCAAAAACCAGCGC AAAAGCTTCCTTAACTTCATCTTATCCAGTGCTTGTTCCATTTAATTACG ATATGAGAAGTCTTGGTAACAACATTCTGTACCGTACCACTAAAGATCAA AATATATTGAATCTTGTTGACAGAGATATCTCACTTTTAAAATCTGTGTC GTCCTTCAAATCAAAAGAAGCAATCGTTGTAACATACAATAACGTTCCTT ACTACGAAATCCGAAACATCTTATTCCGTTATCAAGTCGTCATAGCTACG GATTACAAAAACACATACACTATTTTCAATTATGATCGAATTGATAGATC TGGTTATCACAACATTGGTTTTTCTGAACCATCTGCGTGTAATAAATCGA TAAATGTTCGTTTCAATCTTACTAAAAGTAATCTGACAACTAATTCGAAT GTTGATGTTCCTGGGAAGTTTGTCTTCTTGTTAACAAAGTGCAATAAAGG TAAGAGAATAACGGAAAGTTGACGAAATTTAAGCCATTTAAGCTCTAGTT AAGACGGCAGACTTTCCGCCCTACATATTCTAACCcttattctaattgtg aattaaagtgggcaaAAAGTTG

Coding sequence (CDS) from alignment at scaffold_86:1248985..1251356+

>TCONS_00072953 ID=TCONS_00072953|Name=TCONS_00072953|organism=Clytia hemisphaerica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_86:1248985..1251356+ (Clytia hemisphaerica)
ATGACCGAAAACTTTGACCTCAATAGAAGTCGACTAACAACATCTTCAAA
TGTTGGGTCACCAGGGAAATTCATTTTCTTATTAACAAACTGTAACTTAG
AAAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTTGTACAA
GCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAgaatttcc
attgttttcaacaGCTAACAGATCCAAACTTTGTATAAGTAGTAACGGAT
ACATCACTGTCGACCAACCAAAAACCAGCGCAAAAGCTTCCTTAACTTCA
TCTTATCCAGTGCTTGTTCCATTTAATTACGATATGAGAAGTCTTGGTAA
CAACATTCTGTACCGTACCACTAAAGATCAAAATATATTGAATCTTGTTG
ACAGAGATATCTCACTTTTAAAATCTGTGTCGTCCTTCAAATCAAAAGAA
GCAATCGTTGTAACATACAATAACGTTCCTTACTACGAAATCCGAAACAT
CTTATTCCGTTATCAAGTCGTCATAGCTACGGATTACAAAAACACATACA
CTATTTTCAATTATGATCGAATTGATAGATCTGGTTATCACAACATTGGT
TTTTCTGAACCATCTGCGTGTAATAAATCGATAAATGTTCGTTTCAATCT
TACTAAAAGTAATCTGACAACTAATTCGAATGTTGATGTTCCTGGGAAGT
TTGTCTTCTTGTTAACAAAGTGCAATAAAGGTAAGAGAATAACGGAAAGT
TGAATGACCGAAAACTTTGACCTCAATAGAAGTCGACTAACAACATCTTC
AAATGTTGGGTCACCAGGGAAATTCATTTTCTTATTAACAAACTGTAACT
TAGAAAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTTGTA
CAAGCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAgaatt
tccattgttttcaacaGCTAACAGATCCAAACTTTGTATAAGTAGTAACG
GATACATCACTGTCGACCAACCAAAAACCAGCGCAAAAGCTTCCTTAACT
TCATCTTATCCAGTGCTTGTTCCATTTAATTACGATATGAGAAGTCTTGG
TAACAACATTCTGTACCGTACCACTAAAGATCAAAATATATTGAATCTTG
TTGACAGAGATATCTCACTTTTAAAATCTGTGTCGTCCTTCAAATCAAAA
GAAGCAATCGTTGTAACATACAATAACGTTCCTTACTACGAAATCCGAAA
CATCTTATTCCGTTATCAAGTCGTCATAGCTACGGATTACAAAAACACAT
ACACTATTTTCAATTATGATCGAATTGATAGATCTGGTTATCACAACATT
GGTTTTTCTGAACCATCTGCGTGTAATAAATCGATAAATGTTCGTTTCAA
TCTTACTAAAAGTAATCTGACAACTAATTCGAATGTTGATGTTCCTGGGA
AGTTTGTCTTCTTGTTAACAAAGTGCAATAAAGGTAAGAGAATAACGGAA
AGTTGAATGACCGAAAACTTTGACCTCAATAGAAGTCGACTAACAACATC
TTCAAATGTTGGGTCACCAGGGAAATTCATTTTCTTATTAACAAACTGTA
ACTTAGAAAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTT
GTACAAGCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAga
atttccattgttttcaacaGCTAACAGATCCAAACTTTGTATAAGTAGTA
ACGGATACATCACTGTCGACCAACCAAAAACCAGCGCAAAAGCTTCCTTA
ACTTCATCTTATCCAGTGCTTGTTCCATTTAATTACGATATGAGAAGTCT
TGGTAACAACATTCTGTACCGTACCACTAAAGATCAAAATATATTGAATC
TTGTTGACAGAGATATCTCACTTTTAAAATCTGTGTCGTCCTTCAAATCA
AAAGAAGCAATCGTTGTAACATACAATAACGTTCCTTACTACGAAATCCG
AAACATCTTATTCCGTTATCAAGTCGTCATAGCTACGGATTACAAAAACA
CATACACTATTTTCAATTATGATCGAATTGATAGATCTGGTTATCACAAC
ATTGGTTTTTCTGAACCATCTGCGTGTAATAAATCGATAAATGTTCGTTT
CAATCTTACTAAAAGTAATCTGACAACTAATTCGAATGTTGATGTTCCTG
GGAAGTTTGTCTTCTTGTTAACAAAGTGCAATAAAGGTAAGAGAATAACG
GAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045258XLOC_045258Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072953-proteinTCONS_00072953-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072953-exon-scaffold_86-1491911889:1248985..1249274TCONS_00072953-exon-scaffold_86-1491911889:1248985..1249274Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1510915933:1248985..1249274TCONS_00072953-exon-scaffold_86-1510915933:1248985..1249274Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1575043694:1248985..1249274TCONS_00072953-exon-scaffold_86-1575043694:1248985..1249274Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1491911889:1249692..1249819TCONS_00072953-exon-scaffold_86-1491911889:1249692..1249819Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1510915933:1249692..1249819TCONS_00072953-exon-scaffold_86-1510915933:1249692..1249819Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1575043694:1249692..1249819TCONS_00072953-exon-scaffold_86-1575043694:1249692..1249819Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1491911889:1250738..1251356TCONS_00072953-exon-scaffold_86-1491911889:1250738..1251356Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1510915933:1250738..1251356TCONS_00072953-exon-scaffold_86-1510915933:1250738..1251356Clytia hemisphaericaexon
TCONS_00072953-exon-scaffold_86-1575043694:1250738..1251356TCONS_00072953-exon-scaffold_86-1575043694:1250738..1251356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1248985..1251356 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.801325 0.710312 0.774022 0.532753 1.05251 0.611056 0.500585 0.732031 0.114154 0.421407 0.0927577 0.263717 6.27546 4.02526 5.88905 19.3231 2.0428 2.96831 12.1209 8.57016 11.4814 12.0514 4.7856 5.89302 4.13869 7.97992 0.188844 0.257506 0.643648 0.5959
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003886NIDO_dom
Vocabulary: Biological Process
TermDefinition
GO:0007160cell-matrix adhesion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007160 cell-matrix adhesion
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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