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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072953 ID=TCONS_00072953|Name=TCONS_00072953|organism=Clytia hemisphaerica|type=transcript|length=1037bp
ggtcccaagggaccatataatgagaaaataaaataaaaacccatatttac
tacttgtaaGGGTTGATGCAAAAAAGCCCTTTTCGCCGCCGGACTAATAC
ACTATCTTCAATTATGATCGAATCGATAATTCCGGCTATGACAATATTGG
TTTTGCTGAACCTGACGGGTCATTCGCTTGTAGAATGACCGAAAACTTTG
ACCTCAATAGAAGTCGACTAACAACATCTTCAAATGTTGGGTCACCAGGG
AAATTCATTTTCTTATTAACAAACTGTAACTTAGAAAAAGCATCTATTCC
ATTTGGTCCACAATTTGGAGATCAATTTGTACAAGCTGGTGACGATGTTG
CAACTTGCTTTTCGTCATTTTCGAAAgaatttccattgttttcaacaGCT
AACAGATCCAAACTTTGTATAAGTAGTAACGGATACATCACTGTCGACCA
ACCAAAAACCAGCGCAAAAGCTTCCTTAACTTCATCTTATCCAGTGCTTG
TTCCATTTAATTACGATATGAGAAGTCTTGGTAACAACATTCTGTACCGT
ACCACTAAAGATCAAAATATATTGAATCTTGTTGACAGAGATATCTCACT
TTTAAAATCTGTGTCGTCCTTCAAATCAAAAGAAGCAATCGTTGTAACAT
ACAATAACGTTCCTTACTACGAAATCCGAAACATCTTATTCCGTTATCAA
GTCGTCATAGCTACGGATTACAAAAACACATACACTATTTTCAATTATGA
TCGAATTGATAGATCTGGTTATCACAACATTGGTTTTTCTGAACCATCTG
CGTGTAATAAATCGATAAATGTTCGTTTCAATCTTACTAAAAGTAATCTG
ACAACTAATTCGAATGTTGATGTTCCTGGGAAGTTTGTCTTCTTGTTAAC
AAAGTGCAATAAAGGTAAGAGAATAACGGAAAGTTGACGAAATTTAAGCC
ATTTAAGCTCTAGTTAAGACGGCAGACTTTCCGCCCTACATATTCTAACC
cttattctaattgtgaattaaagtgggcaaAAAGTTG Run BLAST on NCBI protein sequence of TCONS_00072953-protein >TCONS_00072953-protein ID=TCONS_00072953-protein|Name=TCONS_00072953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MTENFDLNRSRLTTSSNVGSPGKFIFLLTNCNLEKASIPFGPQFGDQFVQ
AGDDVATCFSSFSKEFPLFSTANRSKLCISSNGYITVDQPKTSAKASLTS
SYPVLVPFNYDMRSLGNNILYRTTKDQNILNLVDRDISLLKSVSSFKSKE
AIVVTYNNVPYYEIRNILFRYQVVIATDYKNTYTIFNYDRIDRSGYHNIG
FSEPSACNKSINVRFNLTKSNLTTNSNVDVPGKFVFLLTKCNKGKRITES Run BLAST on NCBI transcript from alignment at scaffold_86:1248985..1251356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072953 ID=TCONS_00072953|Name=TCONS_00072953|organism=Clytia hemisphaerica|type=transcript|length=2372bp|location=Sequence derived from alignment at scaffold_86:1248985..1251356+ (Clytia hemisphaerica)
ggtcccaagggaccatataatgagaaaataaaataaaaacccatatttac
tacttgtaaGGGTTGATGCAAAAAAGCCCTTTTCGCCGCCGGACTAATAC
ACTATCTTCAATTATGATCGAATCGATAATTCCGGCTATGACAATATTGG
TTTTGCTGAACCTGACGGGTCATTCGCTTGTAGAATGACCGAAAACTTTG
ACCTCAATAGAAGTCGACTAACAACATCTTCAAATGTTGGGTCACCAGGG
AAATTCATTTTCTTATTAACAAACTGTAACTTAGAAAAAGGTAATTCTGC
TTTATATATTGGTTAAGAAATTTAATCAGGAGACTTATATAGACTCAACG
AACAGCGAATTTCGCCGATCCAAGTAACGATAAGAATTCACATGTCTAAA
AATCGGTTTGGCTTCTCTCAAGTACATTATTCACGCTAATCAACGccggc
ctagaatctagaatTCGCCGGCGTTTATTTTCCATTCGCTAGCCTAtcag
aaacaaaacaaaacacatGGGCTAAGTATAAACTGCAAATATTTTGGACA
AGACTTTATTTAAgacaaatgttttaaattttgctgcTGCGTGTAGTACG
CCGAAAATATGAACACCTTTTTTCATCCTAACAAATCAAGTGAAATAAGA
TCTTTTTCAGTTTTACGATCTGTTACGATTACTTATCTTTCAATTTATCT
TTTAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTTGTACA
AGCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAgaatttc
cattgttttcaacaGCTAACAGATCCAAACTTTGTGTAAGTATAATATTC
GTTAACAAATTTTCCGCCAATGTCAGTTTCCCATACTGTAGGCTCTTCAA
AACTATTTTCCTTGTTTGTTAAGAGTAAGTCATATAACTATTGTCAGAAG
ATAGAAACTCACTTTTTAGTCATATATCTAATTAATTTAGCTGACCCTTA
TTCAATCTAAAAataccttaaccctattcgtactaagggtgaaactaatg
ttaatagctcctgaaataatagagcttttggcatgaaattttttgtaaat
tcctaaaactttaatttagcttcgaaataaaaaaatttgaccatCTAGAA
ATTTTCACACCTTAAACATGATggcatttctgacagtaaggtgtcacgaa
aattgacacatttccaatacaaatttatttttatgtcaaatatatcgttt
aaaccgtaattttttgaatatttaggataaaataggCATTTAGATtcagg
gaacttttttcttaaaCCCTTGTTTGTTTGtacaataactttttataaga
acaaaggaaattttcggtttttgctcactttgggcacgATGAATTTCGTC
ATCAAAAAGATTTAGGATACCTTATAATGACAAGGATCTGGTGTGtcaaa
ttttatccaaaaaataccaactagatcaaaagttaagtgGTACAGGAAAA
CCCCCCCTTAGTTTTGAACCACCCCTAAAAGCCAattatgaatagggtta
aacatAAAACAACGATCTTTCAAAATCATACCTTGAAGGagctaattttg
gtgaattttgacAAAACTTTTAGTCCAAGATTGAGATTAGTTCGAATGCC
TCTCATCACCCATAGAGAAAAACTACGTAGAAGTTTATATAAAAGGAAAA
TGAGTTGTTACTAGAACGTTTGTTTTGAATACTTATTCTTTGTTTGATAC
TAGATAAGTAGTAACGGATACATCACTGTCGACCAACCAAAAACCAGCGC
AAAAGCTTCCTTAACTTCATCTTATCCAGTGCTTGTTCCATTTAATTACG
ATATGAGAAGTCTTGGTAACAACATTCTGTACCGTACCACTAAAGATCAA
AATATATTGAATCTTGTTGACAGAGATATCTCACTTTTAAAATCTGTGTC
GTCCTTCAAATCAAAAGAAGCAATCGTTGTAACATACAATAACGTTCCTT
ACTACGAAATCCGAAACATCTTATTCCGTTATCAAGTCGTCATAGCTACG
GATTACAAAAACACATACACTATTTTCAATTATGATCGAATTGATAGATC
TGGTTATCACAACATTGGTTTTTCTGAACCATCTGCGTGTAATAAATCGA
TAAATGTTCGTTTCAATCTTACTAAAAGTAATCTGACAACTAATTCGAAT
GTTGATGTTCCTGGGAAGTTTGTCTTCTTGTTAACAAAGTGCAATAAAGG
TAAGAGAATAACGGAAAGTTGACGAAATTTAAGCCATTTAAGCTCTAGTT
AAGACGGCAGACTTTCCGCCCTACATATTCTAACCcttattctaattgtg
aattaaagtgggcaaAAAGTTG Coding sequence (CDS) from alignment at scaffold_86:1248985..1251356+ >TCONS_00072953 ID=TCONS_00072953|Name=TCONS_00072953|organism=Clytia hemisphaerica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_86:1248985..1251356+ (Clytia hemisphaerica)
ATGACCGAAAACTTTGACCTCAATAGAAGTCGACTAACAACATCTTCAAA
TGTTGGGTCACCAGGGAAATTCATTTTCTTATTAACAAACTGTAACTTAG
AAAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTTGTACAA
GCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAgaatttcc
attgttttcaacaGCTAACAGATCCAAACTTTGTATAAGTAGTAACGGAT
ACATCACTGTCGACCAACCAAAAACCAGCGCAAAAGCTTCCTTAACTTCA
TCTTATCCAGTGCTTGTTCCATTTAATTACGATATGAGAAGTCTTGGTAA
CAACATTCTGTACCGTACCACTAAAGATCAAAATATATTGAATCTTGTTG
ACAGAGATATCTCACTTTTAAAATCTGTGTCGTCCTTCAAATCAAAAGAA
GCAATCGTTGTAACATACAATAACGTTCCTTACTACGAAATCCGAAACAT
CTTATTCCGTTATCAAGTCGTCATAGCTACGGATTACAAAAACACATACA
CTATTTTCAATTATGATCGAATTGATAGATCTGGTTATCACAACATTGGT
TTTTCTGAACCATCTGCGTGTAATAAATCGATAAATGTTCGTTTCAATCT
TACTAAAAGTAATCTGACAACTAATTCGAATGTTGATGTTCCTGGGAAGT
TTGTCTTCTTGTTAACAAAGTGCAATAAAGGTAAGAGAATAACGGAAAGT
TGAATGACCGAAAACTTTGACCTCAATAGAAGTCGACTAACAACATCTTC
AAATGTTGGGTCACCAGGGAAATTCATTTTCTTATTAACAAACTGTAACT
TAGAAAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTTGTA
CAAGCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAgaatt
tccattgttttcaacaGCTAACAGATCCAAACTTTGTATAAGTAGTAACG
GATACATCACTGTCGACCAACCAAAAACCAGCGCAAAAGCTTCCTTAACT
TCATCTTATCCAGTGCTTGTTCCATTTAATTACGATATGAGAAGTCTTGG
TAACAACATTCTGTACCGTACCACTAAAGATCAAAATATATTGAATCTTG
TTGACAGAGATATCTCACTTTTAAAATCTGTGTCGTCCTTCAAATCAAAA
GAAGCAATCGTTGTAACATACAATAACGTTCCTTACTACGAAATCCGAAA
CATCTTATTCCGTTATCAAGTCGTCATAGCTACGGATTACAAAAACACAT
ACACTATTTTCAATTATGATCGAATTGATAGATCTGGTTATCACAACATT
GGTTTTTCTGAACCATCTGCGTGTAATAAATCGATAAATGTTCGTTTCAA
TCTTACTAAAAGTAATCTGACAACTAATTCGAATGTTGATGTTCCTGGGA
AGTTTGTCTTCTTGTTAACAAAGTGCAATAAAGGTAAGAGAATAACGGAA
AGTTGAATGACCGAAAACTTTGACCTCAATAGAAGTCGACTAACAACATC
TTCAAATGTTGGGTCACCAGGGAAATTCATTTTCTTATTAACAAACTGTA
ACTTAGAAAAAGCATCTATTCCATTTGGTCCACAATTTGGAGATCAATTT
GTACAAGCTGGTGACGATGTTGCAACTTGCTTTTCGTCATTTTCGAAAga
atttccattgttttcaacaGCTAACAGATCCAAACTTTGTATAAGTAGTA
ACGGATACATCACTGTCGACCAACCAAAAACCAGCGCAAAAGCTTCCTTA
ACTTCATCTTATCCAGTGCTTGTTCCATTTAATTACGATATGAGAAGTCT
TGGTAACAACATTCTGTACCGTACCACTAAAGATCAAAATATATTGAATC
TTGTTGACAGAGATATCTCACTTTTAAAATCTGTGTCGTCCTTCAAATCA
AAAGAAGCAATCGTTGTAACATACAATAACGTTCCTTACTACGAAATCCG
AAACATCTTATTCCGTTATCAAGTCGTCATAGCTACGGATTACAAAAACA
CATACACTATTTTCAATTATGATCGAATTGATAGATCTGGTTATCACAAC
ATTGGTTTTTCTGAACCATCTGCGTGTAATAAATCGATAAATGTTCGTTT
CAATCTTACTAAAAGTAATCTGACAACTAATTCGAATGTTGATGTTCCTG
GGAAGTTTGTCTTCTTGTTAACAAAGTGCAATAAAGGTAAGAGAATAACG
GAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072953-exon-scaffold_86-1491911889:1248985..1249274 | TCONS_00072953-exon-scaffold_86-1491911889:1248985..1249274 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1510915933:1248985..1249274 | TCONS_00072953-exon-scaffold_86-1510915933:1248985..1249274 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1575043694:1248985..1249274 | TCONS_00072953-exon-scaffold_86-1575043694:1248985..1249274 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1491911889:1249692..1249819 | TCONS_00072953-exon-scaffold_86-1491911889:1249692..1249819 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1510915933:1249692..1249819 | TCONS_00072953-exon-scaffold_86-1510915933:1249692..1249819 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1575043694:1249692..1249819 | TCONS_00072953-exon-scaffold_86-1575043694:1249692..1249819 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1491911889:1250738..1251356 | TCONS_00072953-exon-scaffold_86-1491911889:1250738..1251356 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1510915933:1250738..1251356 | TCONS_00072953-exon-scaffold_86-1510915933:1250738..1251356 | Clytia hemisphaerica | exon |
| TCONS_00072953-exon-scaffold_86-1575043694:1250738..1251356 | TCONS_00072953-exon-scaffold_86-1575043694:1250738..1251356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1248985..1251356 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003886 | NIDO_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007160 | cell-matrix adhesion |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007160 |
cell-matrix adhesion |
Blast
The following BLAST results are available for this feature:
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