TCONS_00072940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072940
Unique NameTCONS_00072940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1095

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072940 ID=TCONS_00072940|Name=TCONS_00072940|organism=Clytia hemisphaerica|type=transcript|length=1095bp
CAAAATCGTTAatcattcttttcaaatttcaaacgaACAAAGACAATAAC
TGTTCCAAAAGATTATGGATTATGATTCTTTTCGATTGAAGACTGGTTTA
GCTTTTCCAATCCCTGTTGTCCAGCGTTTACCTTTGGAGCAACATCAACA
ACGCGTCCCAAGACACAGCTTCAATAAAGTCGATAGCCTAACCAATTGTC
ATTGCCCTGAAGCAGAGCAAATGTCTCCAAAGAAGAACAGAGGGCGTGGG
AACACAAAACCGCTCGAATCCTTTGAGAGGTTACATCGCTCTGCAGCCGT
TTGCGGTAAAGGATGTTACGGAGAGAAAAGACCTGAAGAATTTTATGATA
TCTTTTTGGCGTCCAGTGTTAAAGAAAGTAAAGCTTATCAAGAAGTTCTG
AAACAAAGAGAAGAAGAGGCTGGAGAACAGgttGTAAGTTATCTACCTGA
CTGCGACATTCCTCAAGCCAtcgaaaatcttcaaaaagaagGAATCTCGT
CTGTAGATCACACCACCTTTGATTCTGGCGTTTCCCTTGGCAACTCAAGT
TCACTCGCACAAAACAGCGTCCTTAGCAACGCGGAGAGAATCGAGAAAGA
AGAAATATTAGAACATCTAAGATATCAGAAAACCAAAAAAGTTTATAAGC
ATAAAAAGACATCCAAGACTTCTTTGAATATTTAGgcattttagatattt
taaatCATTAAATGGAATTGTCTATGTCAAGGTTTTGTACTGTGTAAATT
TATAGTagattttaggcttttttacTCGTAGTATGATAGTATAACCTAGG
AAAGGAATGAACTGAAGTAATCCTAAATTCCTGGATAATTCAAAACGTGT
ATTCTATACTGTGAAATTTGATTAATTTATCATGTGAAGAGTTCTAATTT
TCTTGGGAAGTTCATAAACAAAAACGTGCTGTTGCTGAAAGCTTTCCAGg
aacgaaagtgaaaattatACAAAGGAgaactttatttttcttgattAGAA
TTTACATTTTACCATTTTGATTATTCAAGCTCTATATATATtatgtaatt
atttttatcCTCAAATAAATGATATTTTCATATCTTTATCATAAT
Run BLAST on NCBI

protein sequence of TCONS_00072940-protein

>TCONS_00072940-protein ID=TCONS_00072940-protein|Name=TCONS_00072940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MDYDSFRLKTGLAFPIPVVQRLPLEQHQQRVPRHSFNKVDSLTNCHCPEA
EQMSPKKNRGRGNTKPLESFERLHRSAAVCGKGCYGEKRPEEFYDIFLAS
SVKESKAYQEVLKQREEEAGEQVVSYLPDCDIPQAIENLQKEGISSVDHT
TFDSGVSLGNSSSLAQNSVLSNAERIEKEEILEHLRYQKTKKVYKHKKTS
KTSLNI
Run BLAST on NCBI

transcript from alignment at scaffold_86:1074898..1076508+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072940 ID=TCONS_00072940|Name=TCONS_00072940|organism=Clytia hemisphaerica|type=transcript|length=1611bp|location=Sequence derived from alignment at scaffold_86:1074898..1076508+ (Clytia hemisphaerica)
CAAAATCGTTAatcattcttttcaaatttcaaacgaACAAAGACAATAAC TGTTCCAAAAGATTATGGATTATGATTCTTTTCGATTGAAGACTGGTTTA GCTTTTCCAATCCCTGTTGTCCAGCGTTTACCTTTGGAGCAACATCAACA ACGCGTCCCAAGACACAGCTTCAATAAAGTCGATAGCCTAACCAATTGTC ATTGCCCTGAAGCAGAGCAAATGTCTCCAAAGAAGAACAGAGGGCGTGGG AACACAAAACCGCTCGAATCCTTTGAGAGGTTACATCGCTCTGCAGCCGT TTGCGGTAAAGGATGTTACGGAGAGAAAAGACCTGAAGAATTTTATGATA TCTTTTTGGCGTCCAGTGTTAAAGAAAGTAAAGCTTATCAAGAAGTTCTG AAACAAAGAGAAGAAGAGGCTGGAGAACAGGTACTTTATTGAAGTTTTTA TTCCTCCCTTTTAATAGTCTTTAAAATTAAGTACCGATTTCTCACTTTAA CATAACTTAAACTATTTTACGGGCAGATACTTTCGCGGTTTTTGCCTCTT TTCGCCACAGTCTCTAGGTCAGGTAAGACACTTTTTGTCCTTGAACTTAA ACTTTATATTCTTTTTGGTTATAAAAGGTTTAAATGTCGATTTACTTCCT ATGATTGGGTGTAAGTAGGTTTTGTATTTCGATGACCCGTCTCCTATTTT CTTTAGAGAGGGAAAATTTACCAGAACCGACGACGTTGTTCAACGTTTAT AAAACGTTTTATGGATGTTCTTCAAACGTTCACGATTGTTGCTTTATAAT TTTTAACACCGGCCACTAGAAACGATAAACTGGGAAATTAGGGGTGGAAA CTTTAAACAGGATGATAAATTTCCGTTTAATTTTCACCGTTTCTCTCTCT TTTCGGACGAAATGTTTAGCTTTATAttccttttttatctttttaggttG TAAGTTATCTACCTGACTGCGACATTCCTCAAGCCAtcgaaaatcttcaa aaagaagGAATCTCGTCTGTAGATCACACCACCTTTGATTCTGGCGTTTC CCTTGGCAACTCAAGTTCACTCGCACAAAACAGCGTCCTTAGCAACGCGG AGAGAATCGAGAAAGAAGAAATATTAGAACATCTAAGATATCAGAAAACC AAAAAAGTTTATAAGCATAAAAAGACATCCAAGACTTCTTTGAATATTTA GgcattttagatattttaaatCATTAAATGGAATTGTCTATGTCAAGGTT TTGTACTGTGTAAATTTATAGTagattttaggcttttttacTCGTAGTAT GATAGTATAACCTAGGAAAGGAATGAACTGAAGTAATCCTAAATTCCTGG ATAATTCAAAACGTGTATTCTATACTGTGAAATTTGATTAATTTATCATG TGAAGAGTTCTAATTTTCTTGGGAAGTTCATAAACAAAAACGTGCTGTTG CTGAAAGCTTTCCAGgaacgaaagtgaaaattatACAAAGGAgaacttta tttttcttgattAGAATTTACATTTTACCATTTTGATTATTCAAGCTCTA TATATATtatgtaattatttttatcCTCAAATAAATGATATTTTCATATC TTTATCATAAT

Coding sequence (CDS) from alignment at scaffold_86:1074898..1076508+

>TCONS_00072940 ID=TCONS_00072940|Name=TCONS_00072940|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_86:1074898..1076508+ (Clytia hemisphaerica)
ATGGATTATGATTCTTTTCGATTGAAGACTGGTTTAGCTTTTCCAATCCC
TGTTGTCCAGCGTTTACCTTTGGAGCAACATCAACAACGCGTCCCAAGAC
ACAGCTTCAATAAAGTCGATAGCCTAACCAATTGTCATTGCCCTGAAGCA
GAGCAAATGTCTCCAAAGAAGAACAGAGGGCGTGGGAACACAAAACCGCT
CGAATCCTTTGAGAGGTTACATCGCTCTGCAGCCGTTTGCGGTAAAGGAT
GTTACGGAGAGAAAAGACCTGAAGAATTTTATGATATCTTTTTGGCGTCC
AGTGTTAAAGAAAGTAAAGCTTATCAAGAAGTTCTGAAACAAAGAGAAGA
AGAGGCTGGAGAACAGgttGTAAGTTATCTACCTGACTGCGACATTCCTC
AAGCCAtcgaaaatcttcaaaaagaagGAATCTCGTCTGTAGATCACACC
ACCTTTGATTCTGGCGTTTCCCTTGGCAACTCAAGTTCACTCGCACAAAA
CAGCGTCCTTAGCAACGCGGAGAGAATCGAGAAAGAAGAAATATTAGAAC
ATCTAAGATATCAGAAAACCAAAAAAGTTTATAAGCATAAAAAGACATCC
AAGACTTCTTTGAATATTTAGATGGATTATGATTCTTTTCGATTGAAGAC
TGGTTTAGCTTTTCCAATCCCTGTTGTCCAGCGTTTACCTTTGGAGCAAC
ATCAACAACGCGTCCCAAGACACAGCTTCAATAAAGTCGATAGCCTAACC
AATTGTCATTGCCCTGAAGCAGAGCAAATGTCTCCAAAGAAGAACAGAGG
GCGTGGGAACACAAAACCGCTCGAATCCTTTGAGAGGTTACATCGCTCTG
CAGCCGTTTGCGGTAAAGGATGTTACGGAGAGAAAAGACCTGAAGAATTT
TATGATATCTTTTTGGCGTCCAGTGTTAAAGAAAGTAAAGCTTATCAAGA
AGTTCTGAAACAAAGAGAAGAAGAGGCTGGAGAACAGgttGTAAGTTATC
TACCTGACTGCGACATTCCTCAAGCCAtcgaaaatcttcaaaaagaagGA
ATCTCGTCTGTAGATCACACCACCTTTGATTCTGGCGTTTCCCTTGGCAA
CTCAAGTTCACTCGCACAAAACAGCGTCCTTAGCAACGCGGAGAGAATCG
AGAAAGAAGAAATATTAGAACATCTAAGATATCAGAAAACCAAAAAAGTT
TATAAGCATAAAAAGACATCCAAGACTTCTTTGAATATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045251XLOC_045251Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072940-proteinTCONS_00072940-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072940-exon-scaffold_86-1491911889:1074898..1075327TCONS_00072940-exon-scaffold_86-1491911889:1074898..1075327Clytia hemisphaericaexon
TCONS_00072940-exon-scaffold_86-1510915933:1074898..1075327TCONS_00072940-exon-scaffold_86-1510915933:1074898..1075327Clytia hemisphaericaexon
TCONS_00072940-exon-scaffold_86-1575043694:1074898..1075327TCONS_00072940-exon-scaffold_86-1575043694:1074898..1075327Clytia hemisphaericaexon
TCONS_00072940-exon-scaffold_86-1491911889:1075844..1076508TCONS_00072940-exon-scaffold_86-1491911889:1075844..1076508Clytia hemisphaericaexon
TCONS_00072940-exon-scaffold_86-1510915933:1075844..1076508TCONS_00072940-exon-scaffold_86-1510915933:1075844..1076508Clytia hemisphaericaexon
TCONS_00072940-exon-scaffold_86-1575043694:1075844..1076508TCONS_00072940-exon-scaffold_86-1575043694:1075844..1076508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1074898..1076508 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0400426 0.0780957 0.0906766 0 0.107999 0.0426713 0 0.048196 0.0337431 0.125389 0 0 0.0532621 0.0829699 0.0227375 0 0.0300598 0.0308104 0 0.0890849 0 0.113304 0 0.0417407 121.323 44.9305 0 0.0585975 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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