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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072940 ID=TCONS_00072940|Name=TCONS_00072940|organism=Clytia hemisphaerica|type=transcript|length=1095bp CAAAATCGTTAatcattcttttcaaatttcaaacgaACAAAGACAATAAC TGTTCCAAAAGATTATGGATTATGATTCTTTTCGATTGAAGACTGGTTTA GCTTTTCCAATCCCTGTTGTCCAGCGTTTACCTTTGGAGCAACATCAACA ACGCGTCCCAAGACACAGCTTCAATAAAGTCGATAGCCTAACCAATTGTC ATTGCCCTGAAGCAGAGCAAATGTCTCCAAAGAAGAACAGAGGGCGTGGG AACACAAAACCGCTCGAATCCTTTGAGAGGTTACATCGCTCTGCAGCCGT TTGCGGTAAAGGATGTTACGGAGAGAAAAGACCTGAAGAATTTTATGATA TCTTTTTGGCGTCCAGTGTTAAAGAAAGTAAAGCTTATCAAGAAGTTCTG AAACAAAGAGAAGAAGAGGCTGGAGAACAGgttGTAAGTTATCTACCTGA CTGCGACATTCCTCAAGCCAtcgaaaatcttcaaaaagaagGAATCTCGT CTGTAGATCACACCACCTTTGATTCTGGCGTTTCCCTTGGCAACTCAAGT TCACTCGCACAAAACAGCGTCCTTAGCAACGCGGAGAGAATCGAGAAAGA AGAAATATTAGAACATCTAAGATATCAGAAAACCAAAAAAGTTTATAAGC ATAAAAAGACATCCAAGACTTCTTTGAATATTTAGgcattttagatattt taaatCATTAAATGGAATTGTCTATGTCAAGGTTTTGTACTGTGTAAATT TATAGTagattttaggcttttttacTCGTAGTATGATAGTATAACCTAGG AAAGGAATGAACTGAAGTAATCCTAAATTCCTGGATAATTCAAAACGTGT ATTCTATACTGTGAAATTTGATTAATTTATCATGTGAAGAGTTCTAATTT TCTTGGGAAGTTCATAAACAAAAACGTGCTGTTGCTGAAAGCTTTCCAGg aacgaaagtgaaaattatACAAAGGAgaactttatttttcttgattAGAA TTTACATTTTACCATTTTGATTATTCAAGCTCTATATATATtatgtaatt atttttatcCTCAAATAAATGATATTTTCATATCTTTATCATAAT Run BLAST on NCBI protein sequence of TCONS_00072940-protein >TCONS_00072940-protein ID=TCONS_00072940-protein|Name=TCONS_00072940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MDYDSFRLKTGLAFPIPVVQRLPLEQHQQRVPRHSFNKVDSLTNCHCPEA EQMSPKKNRGRGNTKPLESFERLHRSAAVCGKGCYGEKRPEEFYDIFLAS SVKESKAYQEVLKQREEEAGEQVVSYLPDCDIPQAIENLQKEGISSVDHT TFDSGVSLGNSSSLAQNSVLSNAERIEKEEILEHLRYQKTKKVYKHKKTS KTSLNI Run BLAST on NCBI transcript from alignment at scaffold_86:1074898..1076508+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072940 ID=TCONS_00072940|Name=TCONS_00072940|organism=Clytia hemisphaerica|type=transcript|length=1611bp|location=Sequence derived from alignment at scaffold_86:1074898..1076508+ (Clytia hemisphaerica) CAAAATCGTTAatcattcttttcaaatttcaaacgaACAAAGACAATAAC
TGTTCCAAAAGATTATGGATTATGATTCTTTTCGATTGAAGACTGGTTTA
GCTTTTCCAATCCCTGTTGTCCAGCGTTTACCTTTGGAGCAACATCAACA
ACGCGTCCCAAGACACAGCTTCAATAAAGTCGATAGCCTAACCAATTGTC
ATTGCCCTGAAGCAGAGCAAATGTCTCCAAAGAAGAACAGAGGGCGTGGG
AACACAAAACCGCTCGAATCCTTTGAGAGGTTACATCGCTCTGCAGCCGT
TTGCGGTAAAGGATGTTACGGAGAGAAAAGACCTGAAGAATTTTATGATA
TCTTTTTGGCGTCCAGTGTTAAAGAAAGTAAAGCTTATCAAGAAGTTCTG
AAACAAAGAGAAGAAGAGGCTGGAGAACAGGTACTTTATTGAAGTTTTTA
TTCCTCCCTTTTAATAGTCTTTAAAATTAAGTACCGATTTCTCACTTTAA
CATAACTTAAACTATTTTACGGGCAGATACTTTCGCGGTTTTTGCCTCTT
TTCGCCACAGTCTCTAGGTCAGGTAAGACACTTTTTGTCCTTGAACTTAA
ACTTTATATTCTTTTTGGTTATAAAAGGTTTAAATGTCGATTTACTTCCT
ATGATTGGGTGTAAGTAGGTTTTGTATTTCGATGACCCGTCTCCTATTTT
CTTTAGAGAGGGAAAATTTACCAGAACCGACGACGTTGTTCAACGTTTAT
AAAACGTTTTATGGATGTTCTTCAAACGTTCACGATTGTTGCTTTATAAT
TTTTAACACCGGCCACTAGAAACGATAAACTGGGAAATTAGGGGTGGAAA
CTTTAAACAGGATGATAAATTTCCGTTTAATTTTCACCGTTTCTCTCTCT
TTTCGGACGAAATGTTTAGCTTTATAttccttttttatctttttaggttG
TAAGTTATCTACCTGACTGCGACATTCCTCAAGCCAtcgaaaatcttcaa
aaagaagGAATCTCGTCTGTAGATCACACCACCTTTGATTCTGGCGTTTC
CCTTGGCAACTCAAGTTCACTCGCACAAAACAGCGTCCTTAGCAACGCGG
AGAGAATCGAGAAAGAAGAAATATTAGAACATCTAAGATATCAGAAAACC
AAAAAAGTTTATAAGCATAAAAAGACATCCAAGACTTCTTTGAATATTTA
GgcattttagatattttaaatCATTAAATGGAATTGTCTATGTCAAGGTT
TTGTACTGTGTAAATTTATAGTagattttaggcttttttacTCGTAGTAT
GATAGTATAACCTAGGAAAGGAATGAACTGAAGTAATCCTAAATTCCTGG
ATAATTCAAAACGTGTATTCTATACTGTGAAATTTGATTAATTTATCATG
TGAAGAGTTCTAATTTTCTTGGGAAGTTCATAAACAAAAACGTGCTGTTG
CTGAAAGCTTTCCAGgaacgaaagtgaaaattatACAAAGGAgaacttta
tttttcttgattAGAATTTACATTTTACCATTTTGATTATTCAAGCTCTA
TATATATtatgtaattatttttatcCTCAAATAAATGATATTTTCATATC
TTTATCATAAT Coding sequence (CDS) from alignment at scaffold_86:1074898..1076508+ >TCONS_00072940 ID=TCONS_00072940|Name=TCONS_00072940|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_86:1074898..1076508+ (Clytia hemisphaerica) ATGGATTATGATTCTTTTCGATTGAAGACTGGTTTAGCTTTTCCAATCCC TGTTGTCCAGCGTTTACCTTTGGAGCAACATCAACAACGCGTCCCAAGAC ACAGCTTCAATAAAGTCGATAGCCTAACCAATTGTCATTGCCCTGAAGCA GAGCAAATGTCTCCAAAGAAGAACAGAGGGCGTGGGAACACAAAACCGCT CGAATCCTTTGAGAGGTTACATCGCTCTGCAGCCGTTTGCGGTAAAGGAT GTTACGGAGAGAAAAGACCTGAAGAATTTTATGATATCTTTTTGGCGTCC AGTGTTAAAGAAAGTAAAGCTTATCAAGAAGTTCTGAAACAAAGAGAAGA AGAGGCTGGAGAACAGgttGTAAGTTATCTACCTGACTGCGACATTCCTC AAGCCAtcgaaaatcttcaaaaagaagGAATCTCGTCTGTAGATCACACC ACCTTTGATTCTGGCGTTTCCCTTGGCAACTCAAGTTCACTCGCACAAAA CAGCGTCCTTAGCAACGCGGAGAGAATCGAGAAAGAAGAAATATTAGAAC ATCTAAGATATCAGAAAACCAAAAAAGTTTATAAGCATAAAAAGACATCC AAGACTTCTTTGAATATTTAGATGGATTATGATTCTTTTCGATTGAAGAC TGGTTTAGCTTTTCCAATCCCTGTTGTCCAGCGTTTACCTTTGGAGCAAC ATCAACAACGCGTCCCAAGACACAGCTTCAATAAAGTCGATAGCCTAACC AATTGTCATTGCCCTGAAGCAGAGCAAATGTCTCCAAAGAAGAACAGAGG GCGTGGGAACACAAAACCGCTCGAATCCTTTGAGAGGTTACATCGCTCTG CAGCCGTTTGCGGTAAAGGATGTTACGGAGAGAAAAGACCTGAAGAATTT TATGATATCTTTTTGGCGTCCAGTGTTAAAGAAAGTAAAGCTTATCAAGA AGTTCTGAAACAAAGAGAAGAAGAGGCTGGAGAACAGgttGTAAGTTATC TACCTGACTGCGACATTCCTCAAGCCAtcgaaaatcttcaaaaagaagGA ATCTCGTCTGTAGATCACACCACCTTTGATTCTGGCGTTTCCCTTGGCAA CTCAAGTTCACTCGCACAAAACAGCGTCCTTAGCAACGCGGAGAGAATCG AGAAAGAAGAAATATTAGAACATCTAAGATATCAGAAAACCAAAAAAGTT TATAAGCATAAAAAGACATCCAAGACTTCTTTGAATATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072940-exon-scaffold_86-1491911889:1074898..1075327 | TCONS_00072940-exon-scaffold_86-1491911889:1074898..1075327 | Clytia hemisphaerica | exon |
TCONS_00072940-exon-scaffold_86-1510915933:1074898..1075327 | TCONS_00072940-exon-scaffold_86-1510915933:1074898..1075327 | Clytia hemisphaerica | exon |
TCONS_00072940-exon-scaffold_86-1575043694:1074898..1075327 | TCONS_00072940-exon-scaffold_86-1575043694:1074898..1075327 | Clytia hemisphaerica | exon |
TCONS_00072940-exon-scaffold_86-1491911889:1075844..1076508 | TCONS_00072940-exon-scaffold_86-1491911889:1075844..1076508 | Clytia hemisphaerica | exon |
TCONS_00072940-exon-scaffold_86-1510915933:1075844..1076508 | TCONS_00072940-exon-scaffold_86-1510915933:1075844..1076508 | Clytia hemisphaerica | exon |
TCONS_00072940-exon-scaffold_86-1575043694:1075844..1076508 | TCONS_00072940-exon-scaffold_86-1575043694:1075844..1076508 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:1074898..1076508 + |
Blast
The following BLAST results are available for this feature:
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