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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072938 ID=TCONS_00072938|Name=TCONS_00072938|organism=Clytia hemisphaerica|type=transcript|length=2486bpRun BLAST on NCBI protein sequence of TCONS_00072938-protein >TCONS_00072938-protein ID=TCONS_00072938-protein|Name=TCONS_00072938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp MVTPSEEEDHFLNSNNNNTMIHPEQDDNEKKLSSPSQETKRAVDVDEYLERun BLAST on NCBI transcript from alignment at scaffold_86:1054803..1071424+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072938 ID=TCONS_00072938|Name=TCONS_00072938|organism=Clytia hemisphaerica|type=transcript|length=16622bp|location=Sequence derived from alignment at scaffold_86:1054803..1071424+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:1054803..1071424+ >TCONS_00072938 ID=TCONS_00072938|Name=TCONS_00072938|organism=Clytia hemisphaerica|type=CDS|length=20304bp|location=Sequence derived from alignment at scaffold_86:1054803..1071424+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072938 vs. Swiss-Prot (Human)
Match: S22A4 (Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3) HSP 1 Score: 214.542 bits (545), Expect = 7.291e-60 Identity = 154/526 (29.28%), Postives = 260/526 (49.43%), Query Frame = 1
Query: 406 DVDEYLEYVGRFGRCQXXXXXXXXXXXXPSTYQTLVMSFAGHNPSWRCVIQPNVTN----------------------AXXXXXXXXXXHCSVAGDISSKD-DYYKARCQMNRSLWEYAKDKDYS-IVTEWDLVCEKKTLSYLANSAMFLGWAIGAVVLGWCADKYGRKKVLYPAWFALILAAFISGFSHALWLFIVLRVIIGFCQGGVGLCLFVMATELVGPSWR-SFAGTSIWFAFTIALCIIPVQAMYLK-WKMLEILLSIPYIWLAGFYFVTPESVRWLRVKDRIDEAEAILKKVARVNKMQVPDDIRLSSPPKSPMGKKTTFI-DLFRPSHIAISTAIQCFAWFVCGQVYYGISLASDQLGGDMYRDFVLTSLVEIPGNIILIYLTNKFGRKPTVIYSMLGSGLSCIAVAFIPNSGAAKWGRVSLGMLGKLGITISFNSIYIWSVELFPTIIRTQGMGLMIVVSRLGAASAPWVAQYLNEVHDVLPFTVMGGLGVIASIVCFKLKETNGIPTAETMDGAEN 1902
D DE + ++G +G Q L+ L IIP+ + + + F P RC + P+ N + S + S G +D D + + WE+++D S +VTEW+LVCE L S F+G +G+ V G +D++GRK VL+ +F+ FS + +F VL VI+G Q + F++ TE++G S R F+ + F + ++P+ A +++ W+ML + L++P + ++ PES RWL + R EAE I++K A++N + VP I S +P+ ++ FI DLFR +IAI T + W + Y+ +SL + L GD Y + L++L+EIP I L R+ + + G + + +P + + L MLGK GIT +F+ +Y+++ EL+PT++R +G+ SR+G+ AP+ YL + +LP+ VMG L V+ I+ E+ G+ ET++ +
Sbjct: 3 DYDEVIAFLGEWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHRCRV-PDAANLSSAWRNNSVPLRLRDGREVPHSCSRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSISWEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDWRMLLLALTVPGVLCVPLWWFIPESPRWLISQRRFREAEDIIQKAAKMNNIAVPAVIFDSVEELNPLKQQKAFILDLFRTRNIAIMTIMSLLLWMLTSVGYFALSLDAPNLHGDAYLNCFLSALIEIPAYITAWLLLRTLPRRYIIAAVLFWGGGVLLFIQLVPVD--YYFLSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGVTSTASRVGSIIAPYFV-YLGAYNRMLPYIVMGSLTVLIGILTLFFPESLGMTLPETLEQMQK 524 The following BLAST results are available for this feature:
BLAST of TCONS_00072938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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