Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072933 ID=TCONS_00072933|Name=TCONS_00072933|organism=Clytia hemisphaerica|type=transcript|length=746bpRun BLAST on NCBI protein sequence of TCONS_00072933-protein >TCONS_00072933-protein ID=TCONS_00072933-protein|Name=TCONS_00072933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp MASTGIEKRLFFTALPDLSMLTAFRAAFTSKQEIIGIQPPCCRELIFTLPRun BLAST on NCBI transcript from alignment at scaffold_86:974577..979088+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072933 ID=TCONS_00072933|Name=TCONS_00072933|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at scaffold_86:974577..979088+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:974577..979088+ >TCONS_00072933 ID=TCONS_00072933|Name=TCONS_00072933|organism=Clytia hemisphaerica|type=CDS|length=5568bp|location=Sequence derived from alignment at scaffold_86:974577..979088+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072933 vs. Swiss-Prot (Human)
Match: CR063 (Uncharacterized protein C18orf63 OS=Homo sapiens GN=C18orf63 PE=2 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 9.112e-36 Identity = 76/228 (33.33%), Postives = 122/228 (53.51%), Query Frame = 2 Query: 68 EKRLFFTALPDLSMLTAFRAAFTSK---QEIIGIQPPCCRELIFTLPEILVSPAFDNKSNLFIIAEKKLSSSADFSKTLERLQIKLCTRLEVDAELFEYCLTYTLYQKLAPFWNKTNSFLVRGRNFLQVKDKLSATGLELYVTD-KICIAMEPFQIRSPPIEVEDFTIDFKSLWNFKRDSSAKISGHSIEDSICYVLPSFRKCHITSITHSIPKNTPFKDYNALKQHW 739 ++ LFF LPDL+ L A R ++K EI IQ CR+L+F +IL SP + ++++ + + +E+ K+ V + + CL+Y+ +LAP WN+T L++GR+FL K SA L + VT+ ++C+++E IR P E+++F I + +F + A I HSI + CYVLPS + I +I H+IP PF Y ++HW Sbjct: 6 QQSLFFITLPDLNKLCAVRIILSNKVADTEIRTIQMKMCRQLLFLHQDILTSPVSGILNQIWVVMAIPFYKARKLNAYVEKYGAKMEAPQRVIPVILQNCLSYSFMARLAPAWNRTGHLLIQGRDFLSQMGKQSAVVLNINVTETQVCLSIEACTIRLPAPELKEFEISQSIIKDFHANKHAVIERHSILSNWCYVLPSMKMGQIINIFHAIPAACPFHSYGDFQRHW 233 The following BLAST results are available for this feature:
BLAST of TCONS_00072933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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