TCONS_00072922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072922
Unique NameTCONS_00072922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072922 ID=TCONS_00072922|Name=TCONS_00072922|organism=Clytia hemisphaerica|type=transcript|length=2346bp
CCTTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAAATGAA
CATTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACACCACA
TAAGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGAAAACA
ACATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCTTATGT
TCGCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTATTAAT
TTCAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAATGTATT
TCCTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAAT
GAAaaCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACATACACGA
TGCAATATACCATAAATGGAGGACCATCAACTACCACGACCTTATGCACC
AACATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATATCCACTT
TCATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGTAACAGT
AGTTGAAGAACCTTATATGATGATTGCtaatttttcgaatgtttttgaag
ATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAATAAAGGA
CCATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGA
GGATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAAATATG
GAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAA
GGAAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAAACGATC
TGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGATATTGA
TAAGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTC
AAAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTG
TACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAAAACAGT
ACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGA
GACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTT
GAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGT
TGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTC
GATGACCCAAAGaTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGT
TGCCAACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGT
GGAATCGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATACATCA
AAAGCGTTTGAGCAACTGGCTACTGGAGAACTGCAAGCTATCATACACGA
TTACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAGATTCA
AATTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAA
AAAGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaatatca
agaccaagaattttttttacaactgcaacaaaaatggatggaaaataaAT
GCGTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAAT
GTAGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACT
TTGTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATATTTAT
TGAATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGA
AAAAGATGGAGAAGATATTGAAATTGTTGGAAggaaaagctttatttaag
cttTTGTTGCTTTCTCTCGCGAAATGatcaaattcatgatattcatgacg
tgatgttctctacggaaataccccggttttagccagtagtggaaAATTTa
tactagacaaaagttgtagaaaatttgccactactggcaaaaacggGGGT
CTTctcgtagaaaacattacgtcatgaatatcatgaatcttACTGAATGA
ATTTCCGTGATAATGGATACTTATTATTTTGTAGGACGCATTTATCAGTT
TACACTTATCACCAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAG
CAGGTTTGGAGAAGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTT
ACGCAATTTAATCCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTT
TCGAAGCATAAATTAACTAGATTTTTACGAATTTATAAAGCTTAAC
Run BLAST on NCBI

protein sequence of TCONS_00072922-protein

>TCONS_00072922-protein ID=TCONS_00072922-protein|Name=TCONS_00072922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp
LLFGQTDTLVILTENEHYTKELYTQQCVQRTPHKIWLVPKLMQKEYFENN
IEKWLRDGIQKFVILCSLESTSLLLELTKGLLISSLEPLFFITSRQPMYF
LGSLPSMVVAVEDGNNENSGDPTEKNFDFYIHDAIYHKWRTINYHDLMHQ
HYTSLELRDLIESYPLSSFVQENYQLQLRVVTVVEEPYMMIANFSNVFED
GSCVVGKICWKPNNKGPYCCIGYLIDMLESLEEDLMFQSYLYFVADGKYG
EIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILI
SMLEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGAGKQY
ALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALL
TANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVW
NRMAQFMKDYNFTNTSKAFEQLATGELQAIIHDYFIAYHNIAKDTNCRFK
FAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKC
VETSKGSSPGATNNNNVVVRIGKEYFGGVFIALCGVTLISFGILVVEYLL
NRKIHTRTYWVSERRRKRWRRY
Run BLAST on NCBI

transcript from alignment at scaffold_86:816110..823828+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072922 ID=TCONS_00072922|Name=TCONS_00072922|organism=Clytia hemisphaerica|type=transcript|length=7719bp|location=Sequence derived from alignment at scaffold_86:816110..823828+ (Clytia hemisphaerica)
CCTTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAAATGAA CATTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACACCACA TAAGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGAAAACA ACATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCTTATGT TCGCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTATTAAT TTCAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAATGTATT TCCTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAAT GAAaagtatttgttttttttttcaatccagCCCTCTTTAGGCAGTAAACG TCCGAGTAAACGTCGATCTCAGATCTTGACGAGAATTCAAAACATTAATA TTTTGTACACCGATTCAAGTGAACTGTTAAAGTATCTTTTAAAGTAAGAC CAAGACGATCAGGCCAAGTtggtggggatggaaaaatgaCTTAATTATAA GGTGACTGAGAATCCAAACTTTAATATTTTAAATGTAAAATGCTTTAGTG GGTGGGTGAGGCGGTGATGGTTTCAAGGGTTCTTGTTTTTTAAAAGCATG accaatgggcttttccagaaagacTTTttaccccactgttgaggatattg atttttcgaagtatcgaaacccctggatatcctactttattattAAAGAC CCCTGGatctccactcttaaaaatatgctcaccccctggatattctttct ataaagatgcttacctcCTGGATATCGTatcttttacttgaaaagacact ttaccccctggatatccgattcTGGAAAGTCCAATCTATTCAGTTCATAT TAATCTTTCAGCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACAT ACACGATGCAATATACCATAAATGGAGGACCATCAACTACCACGACCTTA TGCACCAACATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATAT CCACTTTCATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGT AACAGTAGTTGAAGAACCTTATATGATGATTGCtaatttttcgaatgttt ttgaagATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAAT AAAGGACCATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTT AGAAGAGGATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAA AATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTG GTTAAAGGAAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAA ACGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGA TATTGATAAGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAA CCTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACC GAGTTGTACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAA AACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTC CAAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCAT AGCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAG CATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCT GGATTCGATGACCCAAAGGTATAACTTACTATTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNATTGGTTATTTGATCGATATGCTGG AATCGTTAGAAGAGGATCTAATGTTTCAatcttatttatattttgtcGCC GATGGAAAATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGG TGATTTGGTTAAAGGAAAAGCCGATTTGGCTTTAGCCTCGTTAACTATAA ACACAAAACGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGT GGTATgatattgataagtatactgGAAGAGAAAGCGCTACCTTTTGCTAA TCTAGAACCTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTTATAG TCGTACCGAGTTGTACCGTATTAATTATTGTAATTACGGACAGGATAGGT GCTGGAAAACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTT ACTTTTCCAAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGA AAGTCATAGCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACG TATACAGCATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGG AATATCTGGATTCGATGACCCAAAGGTATAACTTactattcattttttta tctACACGTATCAACCTGCGGGTGAATACACAGGATGCGAACATGTGATT ACTccaaaaagttcacgtgattttattcccatgttccTTGTTTTACAACT TAacgctgataactttattagtgtcaataatctcgaaccaatcagaaata aatgtcatgtaacaagcacataaaaatttcgaataaaagcgtgatttgtt atcagactttaattttgcaaccgaTGTATTTGCagttttttattagtttt tgcattGACGTTTTTATGATTGGGGTgccttaaaaaaattttttgcgtcT TTACCTGATACAAGTTTCCGCCACAATTTATTTCTTTTAATATACACTGG TAAACTTGTTTATGGTTAATGGATAAATTCATATTTGAtttctttagaac aacaaactatataagaaccatggccaaaatatcaagaacaagctaagaac aatttaaggctttgtggactctaaaacacccgatttcttaggaaaattgg caaaaacacTCACGGCAAAAATAGTCTAggcaaaatggtgaaattaagaa catttttaagacttgaaactccaaaagttaagaacatccgatggcttcaa aaatgttggatgttcttataaaaaacggttttctttTGTGACAAGCCTTG ATCCCAAACATTAGGGAACTATAAATGGCTCTTTGAACGCTTTCTTCGTT AGAAAGGATTTTTAACATACAAAGAGTTATCATTGGACCGTTTTAAAGGG CCCGTTCAAAAATAGAAGTTCCAGTGAAATAACCTCGAAAAATTTACGAA CAATCGAACAGATCAATTTGTTGTTCAAATGAACTTGATATCATCTCAAA GATAAATAACTAATTGTGGTTTCATGTGTAATTCAATACGCAGTTAAATA CATTGTTATCGTTATCGAGAATTTCGGTCGCATAGCAACAAATTAGACAA TCCTCTAATGAAATGCATTCCTTTCGCTTTCTCATTTTTTGTATCTGGTA AGAACCGGTATCCATGAACCTGGCATTTACTGGTTTCTTCACCCCTGTGT GACAGACACANATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAG GATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAAATATGG AGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAG GAAAAGCCGATTTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCT GAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATgatattgat aagtatactgGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCA AAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGT ACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTA CGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAG ACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTG AGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTT GACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCG ATGACCCAAAGGTATAACTTactattcatttttttatctACACGTATCAA CCTGCGGGTGAATACACAGGATGCGAACATGTGATTACTccaaaaagttc acgtgattttattcccatgttccTTGTTTTACAACTTAacgctgataact ttattagtgtcaataatctcgaaccaatcagaaataaatgtcatgtaaca agcacataaaaatttcgaataaaagcgtgatttgttatcagactttaatt ttgcaaccgaTGTATTTGCagttttttattagtttttgcattGACGTTTT TATGATTGGGGTgccttaaaaaaattttttgcgtcTTTACCTGATACAAG TTTCCGCCACAATTTATTTCTTTTAATATACACTGGTAAACTTGTTTATG GTTAATGGATAAATTCATATTTGAtttctttagaacaacaaactatataa gaaccatggccaaaatatcaagaacaagctaagaacaatttaaggctttg tggactctaaaacacccgatttcttaggaaaattggcaaaaacacTCACG GCAAAAATAGTCTAggcaaaatggtgaaattaagaacatttttaagactt gaaactccaaaagttaagaacatccgatggcttcaaaaatgttggatgtt cttataaaaaacggttttctttTGTGACAAGCCTTGATCCCAAACATTAG GGAACTATAAATGGCTCTTTGAACGCTTTCTTCGTTAGAAAGGATTTTTA ACATACAAAGAGTTATCATTGGACCGTTTTAAAGGGCCCGTTCAAAAATA GAAGTTCCAGTGAAATAACCTCGAAAAATTTACGAACAATCGAACAGATC AATTTGTTGTTCAAATGAATTTGATATCATCTCAAAGATAAATAACTAAT TGTGGTTTCATGTGTAATTCAATACGCAGTTAAATACATTGTTATCGTTA TCGAGAATTTCGGTCGCATAGCAACAAATTAGACAATCCTCTAATGAAAT GCATTCCTTTCGCTTTCTCATTTTTTGTATCTGGTAAGAACCGGTATCCA TGAACCTGGCATTTACTGGTTTCTTCACCCCTGTGTGACAGACACACTGG aatatttggccaaaatttcgtccccggtggtaaAAAGACCCTACAATTTC ATTAAttccgttaaaaaataaatttcaatgtaaaaaattgcactccaaaa ccatcccaactgTAGTTTTTAAAGCTTGAAACTATAGAATTTCTATCACC ATTGGGGTTTCGTTGGAAATTTTCATTCCCACTGTGGGAGAAAGTTCATT GGGGTGTGAGACAAGGGGTTTTGTTACTGGCAGTGGGAATGAAAAATTAG GGAGACTTGCTTGTAACGATTACACGCTTTtgtataagaatagtgtacag tatatccatttcatcatggatatttttaacattttggtaaaaatcatcct aaaatgcCATAACAGTATTCTCAGGATCTAAAGCAAACCTAAATTTAAAA CGTTATGCCaagcagtggcgtggtgggaaaatttctctggggtagccaag gcaaatatggtgcccttttaaaagattttttgtttttggcgcccctctat ATACGCTCATTTTACTTACGAATACAATacaaaaaagggagtgtgcgagc gaagcgagccagaaagtttttgaggtgatgaggggcgccatttttgtttt ttcatttgtcaatctttcgatatgggcgcctgaaaaatccttcttggcgc cccttatttttgggcgccccctctcaaaagggctccgctgggggggcctg gCCCCTCtggcccccctgccaccacgacACTGATGCCAAGCAAGAATAAA GTGTTGAACAACGATAAAGAACATTTGGCCATttcgatgtaaaaataaaa aatgccccAAATTTAGCCTAAATTTAGCATTCTTAGATTCAGTTTGTTAT GATGGTAATATTCTTACTATATTCTTAATTCTTTTACCAATTTCATAATA TTCTTATAGACTAAATTCTAACAAGAACTGTCactttttaaaacttgaaa accaATTGGATTCATACTTAAATTTGATTGGTTTCCtcttatttttatat tatttagaTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCA ACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAAT CGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGC GTTTGAGCAACTGGCTACTGGGTATGGACCATTATAGTCTTAACTTAAAT CTCCCTATCTTAGAATGCCAACACAGAAATAGCACAATGAGGTTGAAGGT TTTTGAGAAATCAGATCACTAAAAATCAGATTACAAGATGTTCACTCCTC GTTTTCTGAAAAAGACTATTTTTGTCTCCCTTAATTTGTCAATGAATATC AGATTGCCAATTCTGTGTTCGAGTTTATTTCACTAATCAATCATTTTAGA GAACTGCAAGCTATCATACACGATTACTTCATTGCATACCACAATATCGC TAAAGACACAAACTGTAGATTCAAATTTGCTGGTGAGTCGATAAAAGATG GTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAACTAGCTAACCAAATC TCCACGctaattttgaaatatcaagaccaagaattttttttacaactgca acaaaaatggatggaaaataaATGCGTTGAAACGTCTAAAGGATCGTCGC CAGGGGCAACCAATAATAACAATGTAGTCGTTCGAATCGGTAAAGAATAT TTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAActttaatttcttttgg aatATTGGTTGTAGAATATTTATTGAATCGAAAAATTCACACAAGAACTT ATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGAAGATATTGAAATTGT TGGAAggaaaagctttatttaagcttTTGTTGCTTTCTCTCGCGAAATGa tcaaattcatgatattcatgacgtgatgttctctacggaaataccccggt tttagccagtagtggaaAATTTatactagacaaaagttgtagaaaatttg ccactactggcaaaaacggGGGTCTTctcgtagaaaacattacgtcatga atatcatgaatcttACTGAATGAATTTCCGTGATAATGGATACTTATTAT TTTGTAGGACGCATTTATCAGTTTACACTTATCACCAACTCTAACACCAT AAAGGTATCGGGTTTGAGTTAAGCAGGTTTGGAGAAGACTTCTAAGTTCT CTTCAATGCAACGACCATGTTTTACGCAATTTAATCCGGGTAGACTGGAA TCCAATCTTCTTTCATATAGCTTTCGAAGCATAAATTAACTAGATTTTTA CGAATTTATAAAGCTTAAC

Coding sequence (CDS) from alignment at scaffold_86:816110..823828+

>TCONS_00072922 ID=TCONS_00072922|Name=TCONS_00072922|organism=Clytia hemisphaerica|type=CDS|length=7476bp|location=Sequence derived from alignment at scaffold_86:816110..823828+ (Clytia hemisphaerica)
TTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAAATGAACA
TTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACACCACATA
AGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGAAAACAAC
ATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCTTATGTTC
GCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTATTAATTT
CAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAATGTATTTC
CTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAATGA
AaaCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACATACACGATG
CAATATACCATAAATGGAGGACCATCAACTACCACGACCTTATGCACCAA
CATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATATCCACTTTC
ATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGTAACAGTAG
TTGAAGAACCTTATATGATGATTGCtaatttttcgaatgtttttgaagAT
GGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAATAAAGGACC
ATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGG
ATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAAATATGGA
GAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGG
AAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTG
AGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGATATTGATA
AGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAA
AGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTA
CCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAAAACAGTAC
GCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGA
CATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGA
GTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTG
ACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGA
TGACCCAAAGaTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTG
CCAACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGG
AATCGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATACATCAAA
AGCGTTTGAGCAACTGGCTACTGGAGAACTGCAAGCTATCATACACGATT
ACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAA
TTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAA
AGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaatatcaag
accaagaattttttttacaactgcaacaaaaatggatggaaaataaATGC
GTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGT
AGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTT
GTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATATTTATTG
AATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAA
AAGATGGAGAAGATATTGATTACTATTTGGTCAAACCGATACCCTGGTTA
TTCTAACAGAAAATGAACATTATACAAAAGAGTTATACACGCAACAATGT
GTGCAAAGGACACCACATAAGATATGGTTGGTACCAAAGCTGATGCAAAA
AGAATACTTTGAAAACAACATCGAGAAATGGCTCAGAGATGGAATTCAAA
AATTTGTCATCTTATGTTCGCTGGAATCGACATCTTTGTTATTAGAATTA
ACCAAAGGTTTATTAATTTCAAGTTTAGAACCTTTATTTTTCATTACCAG
TCGACAGCCAATGTATTTCCTGGGAAGTTTACCGAGTATGGTGGTGGCTG
TTGAAGATGGCAACAATGAAaaCTCCGGTGATCCGACAGAAAAGAACTTT
GACTTCTACATACACGATGCAATATACCATAAATGGAGGACCATCAACTA
CCACGACCTTATGCACCAACATTATACCAGTCTTGAACTCCGAGACCTCA
TCGAATCATATCCACTTTCATCATTCGTACAGGAAAATTACCAACTGCAA
TTGAGGGTTGTAACAGTAGTTGAAGAACCTTATATGATGATTGCtaattt
ttcgaatgtttttgaagATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGA
AGCCAAACAATAAAGGACCATATTGTTGCATTGGTTATTTGATCGATATG
CTGGAATCGTTAGAAGAGGATCTAATGTTTCAatcttatttatattttgt
cGCCGATGGAAAATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGG
TCGGTGATTTGGTTAAAGGAAAAGCCGATTTAGCTTTAGCCTCGTTAACT
ATAAACACAAAACGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGT
TGGTGGTATGATATTGATAAGTATGCTGGAAGAGAAAGCGCTACCTTTTG
CTAATCTAGAACCTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTT
ATAGTCGTACCGAGTTGTACCGTATTAATTATTGTAATTACGGACAGGAT
AGGTGCCGGAAAACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGG
GCTTACTTTTCCAAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGT
TCGAAAGTCATAGCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTC
AACGTATACAGCATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTC
TTGGAATATCTGGATTCGATGACCCAAAGaTCAAAAATCCAACACGAGAG
TTTCGTTATGGTACAGTTGCCAACTCGGCATACACCCAATTATTTGCCAA
CAGTCAAGATCCTGTGTGGAATCGAATGGCACAGTTCATGAAAGATTACA
ATTTTACAAATACATCAAAAGCGTTTGAGCAACTGGCTACTGGAGAACTG
CAAGCTATCATACACGATTACTTCATTGCATACCACAATATCGCTAAAGA
CACAAACTGTAGATTCAAATTTGCTGGTGAGTCGATAAAAGATGGTGGTT
CAGGGTTGGCTGTACAAAAAGGGTCAAAACTAGCTAACCAAATCTCCACG
ctaattttgaaatatcaagaccaagaattttttttacaactgcaacaaaa
atggatggaaaataaATGCGTTGAAACGTCTAAAGGATCGTCGCCAGGGG
CAACCAATAATAACAATGTAGTCGTTCGAATCGGTAAAGAATATTTTGGG
GGAGTTTTTATTGCACTTTGTGGAGTAActttaatttcttttggaatATT
GGTTGTAGAATATTTATTGAATCGAAAAATTCACACAAGAACTTATTGGG
TTTCTGAAAGACGGAGAAAAAGATGGAGAAGATATTGATTACTATTTGGT
CAAACCGATACCCTGGTTATTCTAACAGAAAATGAACATTATACAAAAGA
GTTATACACGCAACAATGTGTGCAAAGGACACCACATAAGATATGGTTGG
TACCAAAGCTGATGCAAAAAGAATACTTTGAAAACAACATCGAGAAATGG
CTCAGAGATGGAATTCAAAAATTTGTCATCTTATGTTCGCTGGAATCGAC
ATCTTTGTTATTAGAATTAACCAAAGGTTTATTAATTTCAAGTTTAGAAC
CTTTATTTTTCATTACCAGTCGACAGCCAATGTATTTCCTGGGAAGTTTA
CCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAATGAAaaCTCCGGTGA
TCCGACAGAAAAGAACTTTGACTTCTACATACACGATGCAATATACCATA
AATGGAGGACCATCAACTACCACGACCTTATGCACCAACATTATACCAGT
CTTGAACTCCGAGACCTCATCGAATCATATCCACTTTCATCATTCGTACA
GGAAAATTACCAACTGCAATTGAGGGTTGTAACAGTAGTTGAAGAACCTT
ATATGATGATTGCtaatttttcgaatgtttttgaagATGGTTCGTGCGTT
GTTGGTAAGATTTGCTGGAAGCCAAACAATAAAGGACCATATTGTTGCAT
TGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTTTC
AatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGAAC
GGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGATTT
AGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAGCT
ATTCACTACCTTTCCTTGTTGGTGGTATGATATTGATAAGTATGCTGGAA
GAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCACT
TGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAATTA
TTGTAATTACGGACAGGATAGGTGCCGGAAAACAGTACGCTCTTCGTGAG
AGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGTAA
AAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTATGT
TTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATAGT
GTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAGaT
CAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCAACTCGGCAT
ACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAATCGAATGGCA
CAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGCGTTTGAGCA
ACTGGCTACTGGAGAACTGCAAGCTATCATACACGATTACTTCATTGCAT
ACCACAATATCGCTAAAGACACAAACTGTAGATTCAAATTTGCTGGTGAG
TCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAACT
AGCTAACCAAATCTCCACGctaattttgaaatatcaagaccaagaatttt
ttttacaactgcaacaaaaatggatggaaaataaATGCGTTGAAACGTCT
AAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGTAGTCGTTCGAAT
CGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAActt
taatttcttttggaatATTGGTTGTAGAATATTTATTGAATCGAAAAATT
CACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGAAG
ATATTGATTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAA
ATGAACATTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACA
CCACATAAGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGA
AAACAACATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCT
TATGTTCGCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTA
TTAATTTCAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAAT
GTATTTCCTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCA
ACAATGAAaaCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACATA
CACGATGCAATATACCATAAATGGAGGACCATCAACTACCACGACCTTAT
GCACCAACATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATATC
CACTTTCATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGTA
ACAGTAGTTGAAGAACCTTATATGATGATTGCtaatttttcgaatgtttt
tgaagATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAATA
AAGGACCATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTTA
GAAGAGGATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAA
ATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGG
TTAAAGGAAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAAA
CGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGAT
ATTGATAAGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAAC
CTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCG
AGTTGTACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAAA
ACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCC
AAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATA
GCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGC
ATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTG
GATTCGATGACCCAAAGaTCAAAAATCCAACACGAGAGTTTCGTTATGGT
ACAGTTGCCAACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCC
TGTGTGGAATCGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATA
CATCAAAAGCGTTTGAGCAACTGGCTACTGGAGAACTGCAAGCTATCATA
CACGATTACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAG
ATTCAAATTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTG
TACAAAAAGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaa
tatcaagaccaagaattttttttacaactgcaacaaaaatggatggaaaa
taaATGCGTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATA
ACAATGTAGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATT
GCACTTTGTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATA
TTTATTGAATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGAC
GGAGAAAAAGATGGAGAAGATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045241XLOC_045241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072922-exon-scaffold_86-1491911889:816110..816464TCONS_00072922-exon-scaffold_86-1491911889:816110..816464Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1510915933:816110..816464TCONS_00072922-exon-scaffold_86-1510915933:816110..816464Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1575043694:816110..816464TCONS_00072922-exon-scaffold_86-1575043694:816110..816464Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1491911889:817021..817927TCONS_00072922-exon-scaffold_86-1491911889:817021..817927Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1510915933:817021..817927TCONS_00072922-exon-scaffold_86-1510915933:817021..817927Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1575043694:817021..817927TCONS_00072922-exon-scaffold_86-1575043694:817021..817927Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1491911889:822517..822680TCONS_00072922-exon-scaffold_86-1491911889:822517..822680Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1510915933:822517..822680TCONS_00072922-exon-scaffold_86-1510915933:822517..822680Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1575043694:822517..822680TCONS_00072922-exon-scaffold_86-1575043694:822517..822680Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1491911889:822909..823828TCONS_00072922-exon-scaffold_86-1491911889:822909..823828Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1510915933:822909..823828TCONS_00072922-exon-scaffold_86-1510915933:822909..823828Clytia hemisphaericaexon
TCONS_00072922-exon-scaffold_86-1575043694:822909..823828TCONS_00072922-exon-scaffold_86-1575043694:822909..823828Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072922-proteinTCONS_00072922-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:816110..823828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0522604 0.0606793 0 0 0 0.565895 0.651514 1.0305 0.818148 0.585193 0.992247 1.54558 0.583225 0.0608623 0.0979719 0.909579 1.31732 2.70138 4.87514 2.2095 1.82953 0.899026 1.4211 0.789698 1.19499 0.375967 0.392126 0.0185447 0.0606034
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
BLAST of TCONS_00072922 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 6.077e-52
Identity = 137/482 (28.42%), Postives = 221/482 (45.85%), Query Frame = 3
Query:  513 QENYQLQLRVVTVVEEPYMMIANFSNVFEDGSCVVGKICWKP------------------NNKGPY----CCIGYLIDMLESLEEDLMFQSYLYFVADGKYGEIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILISMLEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGA----------GKQYALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALLTANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVWNRMAQFMKDYNFTNTSKAFEQLATG--ELQAIIHDYFIAYHNIAKDTNCRFKFAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKCVETSKGSSPGATNNNNVVVRIGKEYFGGVFIALC---GVT-LISFGILVVEYLLNRKIHTRT---YWV 1835
            Q   +L LRVVT++E P++       V ++G C  G++C  P                  N+  P     CC GY ID+LE + ED+ F   LY V DGKYG   NG W G+VGDL++G A +A+ S +INT RS+ + ++ PF    + ++    + A P         +   +W+G+ V    T + + + +               K ++   +      LLF R +  K P  W+ + +    A+F +  +STYTA L A  V       +SG  DPK+ +P++ FR+GTV  S+       S    +  M ++M+ YN   T    E L     +L A I D  +  + ++ D +C+    G+     G G+ +   S L   IS LI +Y+   F   L  KW   + V   K S           +++G ++F G+F+ LC   G++ L + G  +V  LL  +I  ++   YW+
Sbjct:  508 QHPSKLHLRVVTLIEHPFVFT---REVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS----FPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWY--RVVPCGKRSFAVTE-----TLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWL 973          
The following BLAST results are available for this feature:
BLAST of TCONS_00072922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A6.077e-5228.42Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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