|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072914 ID=TCONS_00072914|Name=TCONS_00072914|organism=Clytia hemisphaerica|type=transcript|length=529bp
TGGGCAAGAAATGGTTATTACTGGGTCAAGTTTGACAAATATGTCCACGT
TTATTGTGATATGGAAACGGACGGTGGGGGCTGGATGGCCATCACAAACT
TGGTAACAACTGCACAAAGTCCACACCCTTATTTAGCAAGTACTATGATT
ACTGACATACATCAGCTCGGACAAATCTCCAGTGGTAATTTCATGTTAAG
AGTCGACCAAATCAAACGACTGCAGCAATACATCGGTGAGATCACACAAT
TTCGTTTTTATTGCACCGAAAAATGGCATGGAAGAACTGTACATTTTACT
AATAAATTGAATGTATTTGGAATGCGATTCCGCGATGCATGTCTTAATAG
AATTAATTGGTTGaatacagggaattgtccagaCGCTCTGAAAGTCTACC
CTGATGATGATTCTATTTGGATCAGTGATTGTCCTTACGCATATGGAAAT
CACATGGGAATGGATGACTATAATATCATATATGATCATCTTATATATCA
TAATAGTCGAGCGACGCTTCTGTTAAAAA Run BLAST on NCBI protein sequence of TCONS_00072914-protein >TCONS_00072914-protein ID=TCONS_00072914-protein|Name=TCONS_00072914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
WARNGYYWVKFDKYVHVYCDMETDGGGWMAITNLVTTAQSPHPYLASTMI
TDIHQLGQISSGNFMLRVDQIKRLQQYIGEITQFRFYCTEKWHGRTVHFT
NKLNVFGMRFRDACLNRINWLNTGNCPDALKVYPDDDSIWISDCPYAYGN
HMGMDDYNIIYDHLIYHNSRATLLLK Run BLAST on NCBI transcript from alignment at scaffold_86:753305..756868+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072914 ID=TCONS_00072914|Name=TCONS_00072914|organism=Clytia hemisphaerica|type=transcript|length=3564bp|location=Sequence derived from alignment at scaffold_86:753305..756868+ (Clytia hemisphaerica)
TGGGCAAGAAATGGTTATTACTGGGTCAAGTTTGACAAATATGTCCACGT
TTATTGTGATATGGAAACGGACGGTGGTAAggaaagatttataaagcctg
aagggctagatgtcgtgctttaagccatcacaggcaaaaaaattgaatat
cgcaTAAAAGTacgcacgacatctagcccttcggactttagaaatctatg
attttatttagcttcaaaataaaataattttttacacctaaaaattttca
cacattCAGTAAGGTGTCATAAAATTGACACacttccaatacaaatttat
tttttacatttatttattttttgatttatttccaataaaaatttatattg
tTCAAACccgaatttattgaatatttaagaaaatttagCATTTTGAACTC
GGAGAATTATTTCtaaaaactttcttaaaatATAATAGCCATTTGTAAGA
ACAAACGAAATTTTCGGGGTTTTGCTCACTTTTGGCATGATgcgtgacgt
catcaaaaatgttttttgtcaaaagttgggAGAAAGtgtatccccttttc
tatttgcgctagaccttgGAGATTATATGCTGATAATAAGCACCACAACT
AATATCAGCTCCCAGTTTCTTcactaagaccatgttcgcacgtgatggtt
ccgtttcgctccgaaacggaatgatacttactacttacttacTGCACGGT
TTATCGTCCATTGTTCCCAGCAGCTGGGGTTGGACGCCTTCCTCTTTTGA
TGGCCGTACGCCATGCAATGCGATCGTTTGTCAGGTCGATGTTGACATTG
AGGGACTTCATGTCCGCATTGATATTGTCCGACCATCTCTTTTTTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACCGCAGGAAGTATCAAAGGATTCA
AGAATAGAGTTTTTCAAATTCTTCCAGGATTCATCAATATCATTAGAAGC
AACAACATTTTGCAATTTCGCATTAACACTTGCACAGAAATCCTCACATA
TAGCAGGCTCTTTTAGTTTCCATACGCGTCTGCGTCTGGGAAAGGCTTTG
AGAGTCACCTTGCCTGCATTCAGAATAATGTCACCAACAATCAACTTATG
TTAAAttcttctaaccaatagaatgatgccattctattggttagaagtga
cgtaacacttgaatgcaaccaatagaatggcttaaTTTCGTTTTGGAGca
aaacggaaccgtcacgtgcgaacatgggcTTAGAGGAGATTACCTATATG
CTATTTGTTTGCTGAGTTTGCGGTGACCCGGGATTGCAGAGCAAATACAA
TACCGACTTTTCTACCCTGTCGCCTTATTTACTTGAATAAAACAATTAAT
TCTTATTATAGGGGGCTGGATGGCCATCACAAACTTGGTAACAACTGCAC
AAAGTCCACACCCTTATTTAGCAAGTACTATGATTACTGACATACATCAG
CTCGGACAAATCTCCAGTGGTAATTTCATGTTAAGAGTCGACCAAATCAA
ACGACTGCAGCAATACATCGGTGAGATCACACAATTTCGTTTTTATTGCA
CCGAAAAATGGCATGGAAGAACTGTACATTTTACTAATAAATTGAATGTA
TTTGGAATGCGATTCCGCGATGCATGTCTTAATAGAATTAATTGGTTGaa
tacagggaattgtccagaCGCTCTGAAAGTCTACCCTGATGATGATTCTA
TTTGGATCAGTGATTGTCCTTACGCATATGGAAATCACATGGGAATGGAT
GACTATAATATCATATATGATCATCTTATATATCATAATAGTCGAGCGAC
GCTTCTGTTAAAAA Coding sequence (CDS) from alignment at scaffold_86:753305..756868+ >TCONS_00072914 ID=TCONS_00072914|Name=TCONS_00072914|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_86:753305..756868+ (Clytia hemisphaerica)
TGGGCAAGAAATGGTTATTACTGGGTCAAGTTTGACAAATATGTCCACGT
TTATTGTGATATGGAAACGGACGGTGGGGGCTGGATGGCCATCACAAACT
TGGTAACAACTGCACAAAGTCCACACCCTTATTTAGCAAGTACTATGATT
ACTGACATACATCAGCTCGGACAAATCTCCAGTGGTAATTTCATGTTAAG
AGTCGACCAAATCAAACGACTGCAGCAATACATCGGTGAGATCACACAAT
TTCGTTTTTATTGCACCGAAAAATGGCATGGAAGAACTGTACATTTTACT
AATAAATTGAATGTATTTGGAATGCGATTCCGCGATGCATGTCTTAATAG
AATTAATTGGTTGaatacagggaattgtccagaCGCTCTGAAAGTCTACC
CTGATGATGATTCTATTTGGATCAGTGATTGTCCTTACGCATATGGAAAT
CACATGGGAATGGATGACTATAATATCATATATGATCATCTTATATATCA
TAATAGTCGAGCGACGCTTCTGTTAAAATGGGCAAGAAATGGTTATTACT
GGGTCAAGTTTGACAAATATGTCCACGTTTATTGTGATATGGAAACGGAC
GGTGGGGGCTGGATGGCCATCACAAACTTGGTAACAACTGCACAAAGTCC
ACACCCTTATTTAGCAAGTACTATGATTACTGACATACATCAGCTCGGAC
AAATCTCCAGTGGTAATTTCATGTTAAGAGTCGACCAAATCAAACGACTG
CAGCAATACATCGGTGAGATCACACAATTTCGTTTTTATTGCACCGAAAA
ATGGCATGGAAGAACTGTACATTTTACTAATAAATTGAATGTATTTGGAA
TGCGATTCCGCGATGCATGTCTTAATAGAATTAATTGGTTGaatacaggg
aattgtccagaCGCTCTGAAAGTCTACCCTGATGATGATTCTATTTGGAT
CAGTGATTGTCCTTACGCATATGGAAATCACATGGGAATGGATGACTATA
ATATCATATATGATCATCTTATATATCATAATAGTCGAGCGACGCTTCTG
TTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072914-exon-scaffold_86-1491911889:753305..753380 | TCONS_00072914-exon-scaffold_86-1491911889:753305..753380 | Clytia hemisphaerica | exon |
| TCONS_00072914-exon-scaffold_86-1510915933:753305..753380 | TCONS_00072914-exon-scaffold_86-1510915933:753305..753380 | Clytia hemisphaerica | exon |
| TCONS_00072914-exon-scaffold_86-1575043694:753305..753380 | TCONS_00072914-exon-scaffold_86-1575043694:753305..753380 | Clytia hemisphaerica | exon |
| TCONS_00072914-exon-scaffold_86-1491911889:756416..756868 | TCONS_00072914-exon-scaffold_86-1491911889:756416..756868 | Clytia hemisphaerica | exon |
| TCONS_00072914-exon-scaffold_86-1510915933:756416..756868 | TCONS_00072914-exon-scaffold_86-1510915933:756416..756868 | Clytia hemisphaerica | exon |
| TCONS_00072914-exon-scaffold_86-1575043694:756416..756868 | TCONS_00072914-exon-scaffold_86-1575043694:756416..756868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:753305..756868 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
|
