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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072913 ID=TCONS_00072913|Name=TCONS_00072913|organism=Clytia hemisphaerica|type=transcript|length=2485bpRun BLAST on NCBI transcript from alignment at scaffold_86:720608..738110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072913 ID=TCONS_00072913|Name=TCONS_00072913|organism=Clytia hemisphaerica|type=transcript|length=17503bp|location=Sequence derived from alignment at scaffold_86:720608..738110+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072913 vs. Swiss-Prot (Human)
Match: NRX3A (Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4) HSP 1 Score: 88.5817 bits (218), Expect = 1.010e-17 Identity = 113/467 (24.20%), Postives = 201/467 (43.04%), Query Frame = 3
Query: 285 IVFKFKTTLSQGLLMYIDGKKTQKRDG---NYLLIQLVQSKLVVKLQIGVRLESGLLDKTPTDLNITLGENLNDRMYHYVEVEISKGKVTVMLDHQSRSYTDQRGKT-LTLASPVYVGGVPVKDFEEVVFTRTYLEE--KFVGCISSIGYRHGNRTSKQKYLKVVKTQESKKGCHDQCLIQPILQCKNGGKCLNLFSKENTACDCRGTGYAGPTCS--TASQP----------------LHFTSNSYLSYTNTKHYYPVSS-KVLIRFKPASNSGILIYATGKNKDDESLLVELRKRTLVIVSKLPGLKEEVIKMGEQNITDISWRFVQMIVDSRKTDVRYFDGISERRYFRESRSTSELTPPESSFHFQKIYVGGIPPNL---AAKSESQFAGCLEDVVINN----LDFMKLHRSRSVKSSLYSNGNIDEQCTN------------EIFDEIKEWSKEREGQSVFE 1553
+ F+FKT +S GLL+Y+D DG ++L + LV ++ ++ + + L +K +ND +H++ V + + +MLD + +S Q + + + S +++GGVP D T ++ F G I + ++GN S+ + L Q +G C +P C+NGG C L + CDC TGY G CS + P F + YL Y +++ SS ++ + FK +G++++ TGK+ D +L ++ +LVI + G E +++ D +W V++ + R+ + ++ Y +E + T S F YVGG P + + F GCL++VV N L+ +L R K +Y G + +C N E + + +W+ +R G F+
Sbjct: 51 LSFQFKTNVSTGLLLYLD-------DGGVCDFLCLSLVDGRVQLRFSMDCAETAVLSNK-----------QVNDSSWHFLMVSRDRLRTVLMLDGEGQSGELQPQRPYMDVVSDLFLGGVPT-DIRPSALTLDGVQAMPGFKGLI--LDLKYGN--SEPRLLGSRGVQMDAEG---PCGERP---CENGGICFLL--DGHPTCDCSTTGYGGKLCSEDVSQDPGLSHLMMSEQAREENVATFRGSEYLCYDLSQNPIQSSSDEITLSFKTWQRNGLILH-TGKSADYVNLALKDGAVSLVI-NLGSGAFEAIVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQE-----DYTMLGSDDFF---YVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDIRLELSRLARIADTKMKIY--GEVVFKCENVATLDPINFETPEAYISLPKWNTKRMGSISFD 474 The following BLAST results are available for this feature:
BLAST of TCONS_00072913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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