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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072901 ID=TCONS_00072901|Name=TCONS_00072901|organism=Clytia hemisphaerica|type=transcript|length=2803bpRun BLAST on NCBI protein sequence of TCONS_00072901-protein >TCONS_00072901-protein ID=TCONS_00072901-protein|Name=TCONS_00072901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp MNQMECPICGLSFSKDKIEKHADTCLRFPKEKATTRRRSSGQTPASSVSKRun BLAST on NCBI transcript from alignment at scaffold_86:609274..641857+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072901 ID=TCONS_00072901|Name=TCONS_00072901|organism=Clytia hemisphaerica|type=transcript|length=32584bp|location=Sequence derived from alignment at scaffold_86:609274..641857+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:609274..641857+ >TCONS_00072901 ID=TCONS_00072901|Name=TCONS_00072901|organism=Clytia hemisphaerica|type=CDS|length=14856bp|location=Sequence derived from alignment at scaffold_86:609274..641857+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072901 vs. Swiss-Prot (Human)
Match: WRIP1 (ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1 PE=1 SV=2) HSP 1 Score: 457.218 bits (1175), Expect = 8.537e-148 Identity = 240/447 (53.69%), Postives = 304/447 (68.01%), Query Frame = 2
Query: 569 QIALGKIPLADQMRPTNFDTYFGQ-EAVNSNKVLKELFYNKRIPSLLLWGPPGCGKTSLANIIAQKCKEEAQYRFVTLSATMAGVNDVKEAVKIAKNERKLTRRQTVLFIDEVHRFNKLQQDSFLPHVEDGTIVLIGATTENPSFHLNNALLSRCKLIVLTKLSVTNIKNILQNAVERLDGHEKTESSSKENGDLGFR--------FTLEEGVLKAIAEYAGGDARVALNTLDMLLQSKLNPANI-----DQTF-----YITVQEVKEDMKRGYVNYDRNGDEHYDIISALHKSIRGGDQDAAMYWLARMLEGGESPLYIARRLVRIASEDIGLGDPLALNQAVSAYQACHFIGMPECDVIXXXXXXXXXXXXKSIEVYEAYTKAKQLVKACNGPQPEVPIHLRNAPTKMMKNLGYGKGYKYTPKCLDDPEQEYLPLSLKDTKFFTE 1852
Q+ GK PLAD MRP YFGQ +AV + +L+ L IPSL+LWGPPGCGKT+LA+IIA K+ + RFVTLSAT A NDV++ +K A+NE+ +R+T+LFIDE+HRFNK QQD+FLPHVE GTI LIGATTENPSF +N ALLSRC++IVL KL V + IL A+ L H SS+ L +E+ + +A + GDAR LN L + + ++L+ + Q++ IT +VKE ++R ++ YDR G+EHY+ ISALHKS+RG DQ+A++YWLARMLEGGE PLY+ARRLVR ASEDIGL DP AL QAV+AYQ CHFIGMPEC+V+LAQ Y A A KSIEVY AY K ++ GP P VP+HLRNAPT++MK+LGYGKGYKY P + +QEYLP L+ FF +
Sbjct: 220 QMLQGK-PLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIASNSKKHS-IRFVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIH--VLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLAVLARLSSRKMFCKKSGQSYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRNHQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSEPVDQEYLPEELRGVDFFKQ 662 The following BLAST results are available for this feature:
BLAST of TCONS_00072901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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