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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072880 ID=TCONS_00072880|Name=TCONS_00072880|organism=Clytia hemisphaerica|type=transcript|length=1946bp tagaattttgcaataatttacaaaaacaaacaaattaatGTACAATTTGA AATCATGTGGTCAGAATTTAAAGTGGAAACTTCATTTCAGGCTGAAGAtt ttacaaaacaaagtcgattcttgaaagattttttatctTTCAGTCTGAGT GAAATAGAAGAGCTTTGAACATCGTTTGTAGTGAGCGGAAGCGATGTGTT TCTTCggaatttttaaagtttttgctGTTTTCACTTTGATGAATATAACT CTACCGGTAATGTCAGACAGAAGACCTGAAGAGTCAACCATTTTGAAGAA ACCACAGAAAGTTTTATTGGTGTCTATCGATGGTTTCCGTTGGGATTTGC ACAAAATAACCGACACACCAAATATTGATCGAGTGATCAAAAATGGAATA ACAGTAGATCACGTGTTAAATGTTTTTCCAACTAAAACATTACCCAATCA TCAAAGTATTGTAACAGGGCTTTTTCCTGAACATCATGGCATGATTGATA ATGATTTTATTGATAAAGACTTAGGTGctacattttctcttgaaaatcaa aaatgtatGGAGGATCCAAAGTTCTGGCAACAGTCGCTTCCAATCTGGAT TCAAGTTCAACGCCAAACAAAATACAACACTGGTAATTTATTCTGGCCAG GCTATAAAGTACCGTATAAAAACTACAATCTATTTTTCAACGGAACACCA GCATACCACTTCAAAGATAACTACTATAACGAAACATCGACGTACCTTCC TTCCAAAAGCCTTCAATTTCTTTACGAAAAGGGTATGGGTGATTACAACA AAACATTTTACAAATTAATAGACCAAGCTGTTGAATGGTTGGCGCAAGAT GATGTTATCTTTGTACCTTTATATTCTATGGAACCTGACTTGACTTTACA TGAGAGTGGAGTCGAACATAAAGATGTGAAAAAACAAATCGAACAACTGG ATCAATACGTGGGTTTTATTTATGACAATATAACTCGGCATCCAGCACTG AAAGATCAAGTTAATGTCATCTTTATAGGTGATCATGGACATGTGACCAC GTCAGCTGATCGAATGATTGACCTATCAAAGCTCGTCAATATAACACGTG ATATCGAGGGAGTTTTTGGATTCACGAACGTTTTCCTATACACAATGCCT AACAAAACCCGAAAAGTTTATGAACAATTGAAAAGCAAGGCTGATAAATC GACTTTATTTCgagtatttttaaaagaaaacatacCAAAATATTTACACA TTGGTGATAATTCGAGGACAGGTGATATATTGATTTTACCAGAGCCTGGA TGGATTGTCGTTGACAAGACAAGGTTACCAGACTATCTGAAGGAGCCAGA CTGGGTGAGATCAGAACATGGCTATGATAGCATGAACAGAGACATGAGTC CTGGATTCTTTGCATTCGGGCCAATGTTTAAGAAATGTTTTAAGAAATTC TGTATCAAGACTGTAGATTTATATGAATTGATGTGTAAAATTTTGGGCAT TTCGCCTGACCCAAATGATGGTAAATTTGATAGAGTGAAACCacttttga tcaaaaataagaATAGAAAGGCTTGGAAATCTTTAAAAGATAACGTCTAC GAGGACTGGACTTTAGATGGAAATTCCtatcaaaacaatttaacaatgaA TGGCGATTTCAGTGCAAATACAACCTACATAGACGATAATGTAAAGGATA GAAGTTCATACGTTGGGAATttaacaacaaagacaaaattgaATAATGGT AATATTTTAAGAAACGATGACGCCCCAAGTTTGAAAGATTTCTCGAAAAG ATATGAATTTATACAATCGCAAACTtcgaaaagaatgaaaagtgaAAATG GCAACATTAGATTTGAAATCAAATATGATAACGatgcaaaagaaagaaca attaACGGTGGTGAGGATGACGATGATTATGATAGTAATAATCACC Run BLAST on NCBI protein sequence of TCONS_00072880-protein >TCONS_00072880-protein ID=TCONS_00072880-protein|Name=TCONS_00072880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp
MCFFGIFKVFAVFTLMNITLPVMSDRRPEESTILKKPQKVLLVSIDGFRW DLHKITDTPNIDRVIKNGITVDHVLNVFPTKTLPNHQSIVTGLFPEHHGM IDNDFIDKDLGATFSLENQKCMEDPKFWQQSLPIWIQVQRQTKYNTGNLF WPGYKVPYKNYNLFFNGTPAYHFKDNYYNETSTYLPSKSLQFLYEKGMGD YNKTFYKLIDQAVEWLAQDDVIFVPLYSMEPDLTLHESGVEHKDVKKQIE QLDQYVGFIYDNITRHPALKDQVNVIFIGDHGHVTTSADRMIDLSKLVNI TRDIEGVFGFTNVFLYTMPNKTRKVYEQLKSKADKSTLFRVFLKENIPKY LHIGDNSRTGDILILPEPGWIVVDKTRLPDYLKEPDWVRSEHGYDSMNRD MSPGFFAFGPMFKKCFKKFCIKTVDLYELMCKILGISPDPNDGKFDRVKP LLIKNKNRKAWKSLKDNVYEDWTLDGNSYQNNLTMNGDFSANTTYIDDNV KDRSSYVGNLTTKTKLNNGNILRNDDAPSLKDFSKRYEFIQSQTSKRMKS ENGNIRFEIKYDNDAKERTINGGEDDDDYDSNNH Run BLAST on NCBI transcript from alignment at scaffold_86:448348..451371+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072880 ID=TCONS_00072880|Name=TCONS_00072880|organism=Clytia hemisphaerica|type=transcript|length=3024bp|location=Sequence derived from alignment at scaffold_86:448348..451371+ (Clytia hemisphaerica) tagaattttgcaataatttacaaaaacaaacaaattaatGTACAATTTGA
AATCATGTGGTCAGAATTTAAAGTGGAAACTTCATTTCAGGCTGAAGAtt
ttacaaaacaaagtcgattcttgaaagattttttatctTTCAGTCTGAGT
GAAATAGAAGAGCTTTGAACATCGTTTGTAGTGAGCGGAAGCGATGTGTT
TCTTCggaatttttaaagtttttgctGTTTTCACTTTGATGAATATAACT
CTACCGGTAATGTCAGACAGAAGACCTGAAGAGTCAACCATTTTGAAGAA
ACCACAGAAAGTTTTATTGGTGTCTATCGATGGTTTCCGTTGGGATTTGC
ACAAAATAACCGACACACCAAATATTGATCGAGTGATCAAAAATGGAATA
ACAGTAGATCACGTGTTAAATGTTTTTCCAACTAAAACATTACCCAATCA
TCAAAGTATTGTAACAGGGCTTTTTCCTGAACATCATGGCATGATTGATA
ATGATTTTATTGATAAAGACTTAGGTGctacattttctcttgaaaatcaa
aaatgtatGGAGGATCCAAAGTTCTGGCAACAGTCGCTTCCAATCTGGAT
TCAAGTTCAACGCCAAACAAAATACAACACTGGTAATTTATTCTGGCCAG
GCTATAAAGTACCGTATAAAAACTACAATCTATTTTTCAACGGAACACCA
GCATACCACTTCAAAGATAACTACTATAACGAAACATCGACGTACCTTCC
TTCCAAAAGCCTTCAATTTCTTTACGAAAAGGGTATGGGTGATTACAACA
AAACATTTTACAAATTAATAGACCAAGCTGTTGAATGGTTGGCGCAAGAT
GATGTTATCTTTGTACCTTTATATTCTATGGAACCTGACTTGACTTTACA
TGAGAGTGGAGTCGAACATAAAGATGTGAAAAAACAAATCGAACAACTGG
ATCAATACGTGGGTTTTATTTATGACAATATAACTCGGCATCCAGCACTG
AAAGATCAAGTTAATGTCATCTTTATAGGTAAGCGAGCTGTCATCTTAAC
CAGCGCTTAAACTAGTCTTAGACTCATTTAGGCTATTTCAATATCGTTAT
TTCAAGTGCAACTNTGAAACAAAAACTCAAAACACACTTTGGGCATGAAG
AAAATTACAATcttaaattgattgaaaatttttaatagaattttgcaata
atttacaaaaacaaacaaattaatGTACAATTTGAAATCATGTGGTCAGA
ATTTAAAGTGGAAACTTCATTTCAGGCTGAAGAttttacaaaacaaagtc
gattcttgaaagattttttatctTTCAGTCTGAGTGAAATAGAAGAGCTT
TGAACATCGTTNCCGTTTCATATctgacacatatttcatatcaatacagt
gtcttgctattgttatattatgctgatataagcaaaaactgtttttcttt
tcctctttctgacaaatcttgctccatatccgtgtcaatccaatgtgaaa
aagcttgtgaattaaaattgatgagtaataAGCATACTATATCACTCTTA
TCTAAAAACAAACCCTTTAATTTATTCATACACCCCTTTTCTCGTTTATG
ATCTAAGATGATCACTTTTATTTGTAATATTGCACCCAAAGGTTTCCTCA
ACGAAAAGTACTGAGTCCTGAGTGCTTAGCGTGGTAGCGTGGTACGGTAA
TGAATTCTAAAATTTCCGTAGATATTGGATCTGTTGAAAGACAACCGGGA
ATGTGATCCAATGACATGACCTTGATTCACCTGAGGTCATTCATTGGAGT
GATTCTTAGCANAGAAAGTTTTATTGGTGTCTATCGATGGTTTCCGTTGG
GATTTGCACAAAATAACCGACACACCAAATATTGATCGAGTGATCAAAAA
TGGAATAACAGTAGATCACGTGTTAAATGTTTTTCCAACTAAAACATTAC
CCAATCATCAAAGTATTGTAACAGGGCTTTTTCCTGAACATCATGGGATG
ATTGATAATGATTTTATTGATAAAGACTTAGGTGCTACATTTTCTCTTNT
CATTCATTGGAGTGATTCTTAGCAATTCTACCTTTGAACCTTTGTTCTTC
TTTTAGGTGATCATGGACATGTGACCACGTCAGCTGATCGAATGATTGAC
CTATCAAAGCTCGTCAATATAACACGTGATATCGAGGGAGTTTTTGGATT
CACGAACGTTTTCCTATACACAATGCCTAACAAAACCCGAAAAGTTTATG
AACAATTGAAAAGCAAGGCTGATAAATCGACTTTATTTCgagtattttta
aaagaaaacatacCAAAATATTTACACATTGGTGATAATTCGAGGACAGG
TGATATATTGATTTTACCAGAGCCTGGATGGATTGTCGTTGACAAGACAA
GGTTACCAGACTATCTGAAGGAGCCAGACTGGGTGAGATCAGAACATGGC
TATGATAGCATGAACAGAGACATGAGTCCTGGATTCTTTGCATTCGGGCC
AATGTTTAAGAAATGTTTTAAGAAATTCTGTATCAAGACTGTAGATTTAT
ATGAATTGATGTGTAAAATTTTGGGCATTTCGCCTGACCCAAATGATGGT
AAATTTGATAGAGTGAAACCacttttgatcaaaaataagaATAGAAAGGC
TTGGAAATCTTTAAAAGATAACGTCTACGAGGACTGGACTTTAGATGGAA
ATTCCtatcaaaacaatttaacaatgaATGGCGATTTCAGTGCAAATACA
ACCTACATAGACGATAATGTAAAGGATAGAAGTTCATACGTTGGGAATtt
aacaacaaagacaaaattgaATAATGGTAATATTTTAAGAAACGATGACG
CCCCAAGTTTGAAAGATTTCTCGAAAAGATATGAATTTATACAATCGCAA
ACTtcgaaaagaatgaaaagtgaAAATGGCAACATTAGATTTGAAATCAA
ATATGATAACGatgcaaaagaaagaacaattaACGGTGGTGAGGATGACG
ATGATTATGATAGTAATAATCACC Coding sequence (CDS) from alignment at scaffold_86:448348..451371+ >TCONS_00072880 ID=TCONS_00072880|Name=TCONS_00072880|organism=Clytia hemisphaerica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_86:448348..451371+ (Clytia hemisphaerica) ATGTGTTTCTTCggaatttttaaagtttttgctGTTTTCACTTTGATGAA TATAACTCTACCGGTAATGTCAGACAGAAGACCTGAAGAGTCAACCATTT TGAAGAAACCACAGAAAGTTTTATTGGTGTCTATCGATGGTTTCCGTTGG GATTTGCACAAAATAACCGACACACCAAATATTGATCGAGTGATCAAAAA TGGAATAACAGTAGATCACGTGTTAAATGTTTTTCCAACTAAAACATTAC CCAATCATCAAAGTATTGTAACAGGGCTTTTTCCTGAACATCATGGCATG ATTGATAATGATTTTATTGATAAAGACTTAGGTGctacattttctcttga aaatcaaaaatgtatGGAGGATCCAAAGTTCTGGCAACAGTCGCTTCCAA TCTGGATTCAAGTTCAACGCCAAACAAAATACAACACTGGTAATTTATTC TGGCCAGGCTATAAAGTACCGTATAAAAACTACAATCTATTTTTCAACGG AACACCAGCATACCACTTCAAAGATAACTACTATAACGAAACATCGACGT ACCTTCCTTCCAAAAGCCTTCAATTTCTTTACGAAAAGGGTATGGGTGAT TACAACAAAACATTTTACAAATTAATAGACCAAGCTGTTGAATGGTTGGC GCAAGATGATGTTATCTTTGTACCTTTATATTCTATGGAACCTGACTTGA CTTTACATGAGAGTGGAGTCGAACATAAAGATGTGAAAAAACAAATCGAA CAACTGGATCAATACGTGGGTTTTATTTATGACAATATAACTCGGCATCC AGCACTGAAAGATCAAGTTAATGTCATCTTTATAGGTGATCATGGACATG TGACCACGTCAGCTGATCGAATGATTGACCTATCAAAGCTCGTCAATATA ACACGTGATATCGAGGGAGTTTTTGGATTCACGAACGTTTTCCTATACAC AATGCCTAACAAAACCCGAAAAGTTTATGAACAATTGAAAAGCAAGGCTG ATAAATCGACTTTATTTCgagtatttttaaaagaaaacatacCAAAATAT TTACACATTGGTGATAATTCGAGGACAGGTGATATATTGATTTTACCAGA GCCTGGATGGATTGTCGTTGACAAGACAAGGTTACCAGACTATCTGAAGG AGCCAGACTGGGTGAGATCAGAACATGGCTATGATAGCATGAACAGAGAC ATGAGTCCTGGATTCTTTGCATTCGGGCCAATGTTTAAGAAATGTTTTAA GAAATTCTGTATCAAGACTGTAGATTTATATGAATTGATGTGTAAAATTT TGGGCATTTCGCCTGACCCAAATGATGGTAAATTTGATAGAGTGAAACCa cttttgatcaaaaataagaATAGAAAGGCTTGGAAATCTTTAAAAGATAA CGTCTACGAGGACTGGACTTTAGATGGAAATTCCtatcaaaacaatttaa caatgaATGGCGATTTCAGTGCAAATACAACCTACATAGACGATAATGTA AAGGATAGAAGTTCATACGTTGGGAATttaacaacaaagacaaaattgaA TAATGGTAATATTTTAAGAAACGATGACGCCCCAAGTTTGAAAGATTTCT CGAAAAGATATGAATTTATACAATCGCAAACTtcgaaaagaatgaaaagt gaAAATGGCAACATTAGATTTGAAATCAAATATGATAACGatgcaaaaga aagaacaattaACGGTGGTGAGGATGACGATGATTATGATAGTAATAATC ACATGTGTTTCTTCggaatttttaaagtttttgctGTTTTCACTTTGATG AATATAACTCTACCGGTAATGTCAGACAGAAGACCTGAAGAGTCAACCAT TTTGAAGAAACCACAGAAAGTTTTATTGGTGTCTATCGATGGTTTCCGTT GGGATTTGCACAAAATAACCGACACACCAAATATTGATCGAGTGATCAAA AATGGAATAACAGTAGATCACGTGTTAAATGTTTTTCCAACTAAAACATT ACCCAATCATCAAAGTATTGTAACAGGGCTTTTTCCTGAACATCATGGCA TGATTGATAATGATTTTATTGATAAAGACTTAGGTGctacattttctctt gaaaatcaaaaatgtatGGAGGATCCAAAGTTCTGGCAACAGTCGCTTCC AATCTGGATTCAAGTTCAACGCCAAACAAAATACAACACTGGTAATTTAT TCTGGCCAGGCTATAAAGTACCGTATAAAAACTACAATCTATTTTTCAAC GGAACACCAGCATACCACTTCAAAGATAACTACTATAACGAAACATCGAC GTACCTTCCTTCCAAAAGCCTTCAATTTCTTTACGAAAAGGGTATGGGTG ATTACAACAAAACATTTTACAAATTAATAGACCAAGCTGTTGAATGGTTG GCGCAAGATGATGTTATCTTTGTACCTTTATATTCTATGGAACCTGACTT GACTTTACATGAGAGTGGAGTCGAACATAAAGATGTGAAAAAACAAATCG AACAACTGGATCAATACGTGGGTTTTATTTATGACAATATAACTCGGCAT CCAGCACTGAAAGATCAAGTTAATGTCATCTTTATAGGTGATCATGGACA TGTGACCACGTCAGCTGATCGAATGATTGACCTATCAAAGCTCGTCAATA TAACACGTGATATCGAGGGAGTTTTTGGATTCACGAACGTTTTCCTATAC ACAATGCCTAACAAAACCCGAAAAGTTTATGAACAATTGAAAAGCAAGGC TGATAAATCGACTTTATTTCgagtatttttaaaagaaaacatacCAAAAT ATTTACACATTGGTGATAATTCGAGGACAGGTGATATATTGATTTTACCA GAGCCTGGATGGATTGTCGTTGACAAGACAAGGTTACCAGACTATCTGAA GGAGCCAGACTGGGTGAGATCAGAACATGGCTATGATAGCATGAACAGAG ACATGAGTCCTGGATTCTTTGCATTCGGGCCAATGTTTAAGAAATGTTTT AAGAAATTCTGTATCAAGACTGTAGATTTATATGAATTGATGTGTAAAAT TTTGGGCATTTCGCCTGACCCAAATGATGGTAAATTTGATAGAGTGAAAC CacttttgatcaaaaataagaATAGAAAGGCTTGGAAATCTTTAAAAGAT AACGTCTACGAGGACTGGACTTTAGATGGAAATTCCtatcaaaacaattt aacaatgaATGGCGATTTCAGTGCAAATACAACCTACATAGACGATAATG TAAAGGATAGAAGTTCATACGTTGGGAATttaacaacaaagacaaaattg aATAATGGTAATATTTTAAGAAACGATGACGCCCCAAGTTTGAAAGATTT CTCGAAAAGATATGAATTTATACAATCGCAAACTtcgaaaagaatgaaaa gtgaAAATGGCAACATTAGATTTGAAATCAAATATGATAACGatgcaaaa gaaagaacaattaACGGTGGTGAGGATGACGATGATTATGATAGTAATAA TCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072880-exon-scaffold_86-1491911889:448348..449375 | TCONS_00072880-exon-scaffold_86-1491911889:448348..449375 | Clytia hemisphaerica | exon |
TCONS_00072880-exon-scaffold_86-1510915933:448348..449375 | TCONS_00072880-exon-scaffold_86-1510915933:448348..449375 | Clytia hemisphaerica | exon |
TCONS_00072880-exon-scaffold_86-1575043694:448348..449375 | TCONS_00072880-exon-scaffold_86-1575043694:448348..449375 | Clytia hemisphaerica | exon |
TCONS_00072880-exon-scaffold_86-1491911889:450454..451371 | TCONS_00072880-exon-scaffold_86-1491911889:450454..451371 | Clytia hemisphaerica | exon |
TCONS_00072880-exon-scaffold_86-1510915933:450454..451371 | TCONS_00072880-exon-scaffold_86-1510915933:450454..451371 | Clytia hemisphaerica | exon |
TCONS_00072880-exon-scaffold_86-1575043694:450454..451371 | TCONS_00072880-exon-scaffold_86-1575043694:450454..451371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_86 | supercontig | scaffold_86:448348..451371 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR017849 | Alkaline_Pase-like_a/b/a |
IPR002591 | Phosphodiest/P_Trfase |
IPR017850 | Alkaline_phosphatase_core |
Vocabulary: Molecular Function
Term | Definition |
GO:0003824 | catalytic activity |
Vocabulary: Biological Process
Term | Definition |
GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0008152 |
metabolic process |
molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00072880 vs. Swiss-Prot (Human)
Match: ENPP4 (Bis(5'-adenosyl)-triphosphatase ENPP4 OS=Homo sapiens GN=ENPP4 PE=1 SV=3) HSP 1 Score: 191.045 bits (484), Expect = 3.802e-53 Identity = 143/440 (32.50%), Postives = 215/440 (48.86%), Query Frame = 2
Query: 257 VMSDRRPEESTILKKPQKVLLVSIDGFRWDLHKITDTPNIDRVIKNGITVDHVLNVFPTKTLPNHQSIVTGLFPEHHGMIDNDFIDKDLGATFSLENQKCMEDPKFWQQSLPIWIQVQRQTKYNTGNLFWPGYKVPYKNYNLFFNGTPAYHFKDNYYNETSTYLPSKSLQFLYEKGMGDYNKTFYKLIDQAVEWLAQDD--VIFVPLYSMEPDLTLHESGVEHKD-VKKQIEQLDQYVGFIYDNITRHPALKDQVNVIFIGDHGHVTTSADRMIDLSKLVNITR----DIEGVFGFTNVFLYTMPNKTR-KVYEQLKSKADKSTLFRVFLKENIPKYLHIGDNSRTGDILILPEPGWIVVDKTRLPDYLKEPDWVRSEHGYDSMNRDMSPGFFAFGPMXXXXXXXXXXXTVDLYELMCKILGISPDPNDGKFDRVKPLLI 1552
+++ R + S+ L P K+LLVS DGFR D K + P++ IK G+ V+HV NVF TKT PNH SIVTGL+ E HG++ N D FS N K DP +W +++PIW+ Q Q ++ WPG VP + T + +F + YN + +F + ++ WL + V F LY EPD + H+ G E K+ + + ++++D +G + + + L + +NVI DHG S DR+I+L ++ + D+ V +P R +VY +LK + S V+LKE+IP + N R I+++ + GW +V L E +HGYD+ M P A GP F K +K I VD+Y +MC ILG+ P PN+G F K LL+
Sbjct: 12 LITGFRSDSSSSL--PPKLLLVSFDGFRADYLKNYEFPHLQNFIKEGVLVEHVKNVFITKTFPNHYSIVTGLYEESHGIVANSMYDAVTKKHFSDSNDK---DPFWWNEAVPIWVTNQLQENRSSAAAMWPGTDVP-------IHDTISSYFMN--YNSSV---------------------SFEERLNNITMWLNNSNPPVTFATLYWEEPDASGHKYGPEDKENMSRVLKKIDDLIGDLVQRL-KMLGLWENLNVIITSDHGMTQCSQDRLINLDSCIDHSYYTLIDLSPVAAI-------LPKINRTEVYNKLK---NCSPHMNVYLKEDIPNRFYYQHNDRIQPIILVADEGWTIV--------LNESSQKLGDHGYDNSLPSMHPFLAAHGPAFHKGYKHSTINIVDIYPMMCHILGLKPHPNNGTFGHTKCLLV 397
The following BLAST results are available for this feature:
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