TCONS_00072856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072856
Unique NameTCONS_00072856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072856 ID=TCONS_00072856|Name=TCONS_00072856|organism=Clytia hemisphaerica|type=transcript|length=891bp
CAGAAATGACAGCACAAAAAAGCAGCGTAGTTCGAGAAAGTTGACGACGA
AGCAAAAACCACACTAAATTTCGTAATCTAAGGCAATAAAGAGAACAGAT
TGACAGAGACAAAGAAGGATTAAGTACTACACTAAAACATAGATCAAAAT
GCCTACCATTCGTTTGCAAAGCAGTGACAGTGAAATCTTTGAGATTGATG
TGGAAATTGCAAAAGCTTCAATGACCATCAAAACAATGTTAGAAGATCTT
GGTTTGGATGAAGATGATGACGAACCCATCCCATTACCCAACGTAAATGC
TGCCATCTTAAGAAAAGTCATTCAATGGGCAACACACCACAAAGACGACC
CACCACCACCAGAAGatgatgaaaacaaagaaaagcgCACAGACGATATC
GAAACCTGGGATCAAGAATTCCTCAAAGTTGATCAAGGAACTCTCTTTGA
ATTGATTCTAGCTGCTAATTATTTGGATATTAAAGGACTCTTAGATGTTT
GCTGTAAAACAGTAGCAAATATGATTAAAGGTAAAACACCTGAAGAGATC
CGCAAAACCTTCAACATTAAAAATGACTTCACGCCAGAAGAGGAGGAACA
AGTACGCAAAGAGAATGAATGGTGTGAGGATAAATAAATTTGATCAAGTA
ATTTTTAAGTGTTACTCGACTTCACTTTCAAAACATCAGGGACATCAAAA
AGTATCTATTCAAATCTAATACTTTATTTTGTTTATACGTTTCTAATTTC
TTACGTTTATATTTAATTTCATACCATTAAACTGTGTGTTTAAGTTTATA
TAATAAAAGCTTTCAAACTTAAAGTTGTGTTGtgtgtttaaaaatctttc
tcCAAATGTTTTATCTCTAAAGTTTGCAAAATGACCAAGAT
Run BLAST on NCBI

protein sequence of TCONS_00072856-protein

>TCONS_00072856-protein ID=TCONS_00072856-protein|Name=TCONS_00072856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MPTIRLQSSDSEIFEIDVEIAKASMTIKTMLEDLGLDEDDDEPIPLPNVN
AAILRKVIQWATHHKDDPPPPEDDENKEKRTDDIETWDQEFLKVDQGTLF
ELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEE
QVRKENEWCEDK
Run BLAST on NCBI

transcript from alignment at scaffold_86:316437..319497+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072856 ID=TCONS_00072856|Name=TCONS_00072856|organism=Clytia hemisphaerica|type=transcript|length=3061bp|location=Sequence derived from alignment at scaffold_86:316437..319497+ (Clytia hemisphaerica)
CAGAAATGACAGCACAAAAAAGCAGCGTAGTTCGAGAAAGTTGACGACGA AGCAAAAACCACACTAAATTTCGTAATCTAAGGCAATAAAGAGAACAGAT TGACAGAGACAAAGAAGGATTAAGTAGTAAGTAAAAACATATTATTGGAG ATGGAATATCTCAGAGGATAGTAGACAGGGATGGAGTATTCATTCATCAG TTTTTTTTGCtttgtgtcaatttttatgGGATATAAAGCAATAAACAAAG AATGTGATGGTGATATCAGTTAAGATTAACCTGATAGCAGCTATGGAGTT TTTTTTAACgcgacacgctgaagctctaaagatcgctaaaaactaacatc tgaggaaaatggccctatctctacagaaattttgagtcaactttttgtct tgtgccgaaaacttcaaaattaaaacTCGGCTGAAATGGCGCTCCATGAA AAGTGccttttatagataggaattaaaattctatcccacaatgctttgcg actggaaagatttcaaattggaggcggaaggtgaaaatggatgtttgtta ttgttctgaaactcaagttttttggtctttatactttataaactttataa aagtattcagtaatggtttgtattcattttctatagcttcagttttcttc tactgataatataaagatgtttgtttatgatttttctctctttttaagtG GTATTTGTGTGTGATGTTATTATACTTTGTTTTCTCTtgtgtgatcagtt taaagcaaaaaagattcttttttgacCATATTCATCCATTAAAGAACCTT GTTTGTGAAATACAataatgttttgcatacttcttttccaaaaaagttct gaatttGCTTCGAGAGAACTTGACATATCTCCTGACCTAAaagttgtcgg ccatgacaccccTCCTTGTCGACATTGCACCCGGACCTGTTCCActtaaa taaaattctacgcGGTCCGCGTACAGGCGCGCGaccatattcttcagatt gtatatttttcgtccacgtctttagagcttcagcgtactgggccagaaaa tacacaatctgttatcaggttAGTTAAGTTAGAGAAGAGAGTTAGAGAAG TCAGTTATAACCTAGTCCTTATGCAGCGATGGTATCATCAGTTATTCACA CttggaaatcaagctttcagcaAAAAACAAGTATCAGTCATCTGCAGGCT GtattttaaaacttatttttgatATCATTTAGATAGATTGGTGCATTTTG CAAAACTAATTTTGGCACTCACTTTCTGgcaaaattttttcatatatCTA GgggtttttgaagatttttagtgAAACATTGGGCAAATTAAATTTTGGTG ATGGTAGACAcccaaaaatgggaaaattttagGTCATTAATAATAGCTGT CTGTGGTGACTAGCTAGAGTCTAGTAGCTCTGGATAAAAATATTTCCTAT GCTGCAAACAAGAAAATGTGAAACCCCAAGAAATTTTATGTACCTATAAA GCCCCAAATGGGAGGGGGGCTTGTAGgagttcgaaataccgtttttccgt cAAAAGTTTTGctgaatgggctcttccagaaaaaaaacattcatgggggg tggaggatatattgtccaggggtattgaaaaaaaccTGAAAAGCTGCCAT GTCCATGCGGTGAATcagcaatgtccaggggtaaatatttgtgtccaggg ggtcaatttgatgcttatccaggggtaaaacacgtgtccagggggtgaaa aatcgaaaagtccaggggtagatcaaagaaaaaataatatatcctccaca ccccatgaacgaattttttctggaagagcccaatcccGGAatcccaaaaa ttgaaaaaaatagtaaCGCCGTCACAACAGATTGtccaggttcaaatacc ggcataatgacaaaatagaaggccaaataccgtcaccgtctgattttaaa atactgttttcccgtcttttttcctgtcaaatcccgtaataccgtactaa aaaatggccaatcccgtcacaccgtaaaagtacaaaccccccccaAATTG AACCGCCCTAAATAACTTGAACCGCCCAATTTGCCAAACACAGGAGAAAG AATATGTAACTCGAATCAGGAATTAGCTTCATTATGAATACAATTTTATA AGCTCCCTGaacaaaaaacagaaaattaaaACAGGCCTGGCTCCTAGAAT CCCCATTCAAGTGCTTAGGTCTGCAGTACTGGGCTGTTTTTCATACTAAA TTTATTTCTAAGAACGATTATGTGTGACATGCAATTCTCATTTTAGCTAC ACTAAAACATAGATCAAAATGCCTACCATTCGTTTGCAAAGCAGTGACAG TGAAATCTTTGAGATTGATGTGGAAATTGCAAAAGCTTCAATGACCATCA AAACAATGTTAGAAGATCTTGGTTTGGATGAAGATGATGACGAACCCATC CCATTACCCAACGTAAATGCTGCCATCTTAAGAAAAGTCATTCAATGGGC AACACACCACAAAGACGACCCACCACCACCAGAAGatgatgaaaacaaag aaaagcgCACAGACGATATCGAAACCTGGGATCAAGAATTCCTCAAAGTT GATCAAGGAACTCTCTTTGAATTGATTCTAGCTGCTAATTATTTGGATAT TAAAGGACTCTTAGATGTTTGCTGTAAAACAGTAGCAAATATGATTAAAG GTAAAACACCTGAAGAGATCCGCAAAACCTTCAACATTAAAAATGACTTC ACGCCAGAAGAGGAGGAACAAGTACGCAAAGAGAATGAATGGTGTGAGGA TAAATAAATTTGATCAAGTAATTTTTAAGTGTTACTCGACTTCACTTTCA AAACATCAGGGACATCAAAAAGTATCTATTCAAATCTAATACTTTATTTT GTTTATACGTTTCTAATTTCTTACGTTTATATTTAATTTCATACCATTAA ACTGTGTGTTTAAGTTTATATAATAAAAGCTTTCAAACTTAAAGTTGTGT TGtgtgtttaaaaatctttctcCAAATGTTTTATCTCTAAAGTTTGCAAA ATGACCAAGAT

Coding sequence (CDS) from alignment at scaffold_86:316437..319497+

>TCONS_00072856 ID=TCONS_00072856|Name=TCONS_00072856|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_86:316437..319497+ (Clytia hemisphaerica)
ATGCCTACCATTCGTTTGCAAAGCAGTGACAGTGAAATCTTTGAGATTGA
TGTGGAAATTGCAAAAGCTTCAATGACCATCAAAACAATGTTAGAAGATC
TTGGTTTGGATGAAGATGATGACGAACCCATCCCATTACCCAACGTAAAT
GCTGCCATCTTAAGAAAAGTCATTCAATGGGCAACACACCACAAAGACGA
CCCACCACCACCAGAAGatgatgaaaacaaagaaaagcgCACAGACGATA
TCGAAACCTGGGATCAAGAATTCCTCAAAGTTGATCAAGGAACTCTCTTT
GAATTGATTCTAGCTGCTAATTATTTGGATATTAAAGGACTCTTAGATGT
TTGCTGTAAAACAGTAGCAAATATGATTAAAGGTAAAACACCTGAAGAGA
TCCGCAAAACCTTCAACATTAAAAATGACTTCACGCCAGAAGAGGAGGAA
CAAGTACGCAAAGAGAATGAATGGTGTGAGGATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045218XLOC_045218Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072856-proteinTCONS_00072856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072856-exon-scaffold_86-1491911889:316437..316562TCONS_00072856-exon-scaffold_86-1491911889:316437..316562Clytia hemisphaericaexon
TCONS_00072856-exon-scaffold_86-1510915933:316437..316562TCONS_00072856-exon-scaffold_86-1510915933:316437..316562Clytia hemisphaericaexon
TCONS_00072856-exon-scaffold_86-1575043694:316437..316562TCONS_00072856-exon-scaffold_86-1575043694:316437..316562Clytia hemisphaericaexon
TCONS_00072856-exon-scaffold_86-1491911889:318733..319497TCONS_00072856-exon-scaffold_86-1491911889:318733..319497Clytia hemisphaericaexon
TCONS_00072856-exon-scaffold_86-1510915933:318733..319497TCONS_00072856-exon-scaffold_86-1510915933:318733..319497Clytia hemisphaericaexon
TCONS_00072856-exon-scaffold_86-1575043694:318733..319497TCONS_00072856-exon-scaffold_86-1575043694:318733..319497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:316437..319497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
452.695 448.213 592.671 608.307 463.407 361.874 234.758 252.242 167.655 147.547 141.058 122.197 93.5397 92.9919 88.9168 105.344 143.634 140.82 57.2637 79.3529 117.212 108.123 190.764 171.376 312.208 283.051 189.338 141.727 117.011 112.243
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016897SKP1
IPR016072Skp1_comp_dimer
IPR016073Skp1_comp_POZ
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
Blast
BLAST of TCONS_00072856 vs. Swiss-Prot (Human)
Match: SKP1 (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 1.376e-76
Identity = 141/163 (86.50%), Postives = 153/163 (93.87%), Query Frame = 2
Query:  149 MPTIRLQSSDSEIFEIDVEIAKASMTIKTMXXXXXXXXXXXX-PIPLPNVNAAILRKVIQWATHHXXXXXXXXXXXXXXXRTDDIETWDQEFLKVDQGTLFELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEWCEDK 634
            MP+I+LQSSD EIFE+DVEIAK S+TIKTMLEDLG+D++ D+ P+PLPNVNAAIL+KVIQW THHKDDPPPPEDDENKEKRTDDI  WDQEFLKVDQGTLFELILAANYLDIKGLLDV CKTVANMIKGKTPEEIRKTFNIKNDFT EEE QVRKEN+WCE+K
Sbjct:    1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163          
The following BLAST results are available for this feature:
BLAST of TCONS_00072856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKP11.376e-7686.50S-phase kinase-associated protein 1 OS=Homo sapien... [more]
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