TCONS_00072853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072853
Unique NameTCONS_00072853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072853 ID=TCONS_00072853|Name=TCONS_00072853|organism=Clytia hemisphaerica|type=transcript|length=918bp
cCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcatgtttt
ttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgTCGAGC
ATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAAGGTTT
TTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAATGTCTG
TATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAGAGGAG
AATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAAGATAC
CAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATTCACCA
CTTTAGTGACATCTCTATCAACATTCACAAGAGATCTGTAGCGGTGATAA
CATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAAAATCAA
TtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTACAATGT
GATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAAATTTAG
GTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGAAAAACC
CCGCAACCGAATACACATTTGATCTTGAGTTAAATAACAATAAATACCTC
CCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTATAAAAGAACTGA
ATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGGACTGGAGAGGT
TGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGTTAGGAAAATTc
gcttttttagatttttaactACTTTTCATCTTATTTTGTGCAAAAGTAAA
AGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGCCATTTTATAAA
GGTTGGTATTGAATTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_86:299831..301354+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072853 ID=TCONS_00072853|Name=TCONS_00072853|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at scaffold_86:299831..301354+ (Clytia hemisphaerica)
cCATGACAGTGGCACATTCCTGTAGAACTCGTATTaaagtttcatgtttt ttagtGTCTTGTCTTTCagcaaataaataaaaagtagaaaaacgTCGAGC ATTTCAAATTGCACAGCAAGCATTTCAAAAACTAATCGCTGAGAAGGTTT TTCTGCTTTTCAGTAAAAAGTAATAACAGTAACAAATACTCCAATGTCTG TATCAAATGAATTCACAGTGCTGTCATGGAATATCGATGGTGTAGAGGAG AATTGCCTCCATGCACGAACAGAGGCAGTCATCAAATACATTGAAGATAC CAAACCAACCATCGTTATGTTGCAAGAGGTAGTACCACAGTCATTCACCA CTTTAGTGACATCTCTATCAACGTAAGCAACTTttgattctttgattttt tatatttatgtttGTTAAGTTACgcaatttccgccattatggaagcagaC GCTCGAATCTGTATAGATTCGTAATAGTAATTTAACCAAACTTGAATAAC CTCCATTTCCAGTTCAAATTTTAATTGGTAAGGTCCCTTTGTTCATGATA TGAAAATCCTGGGAAATCCAAAATCAGTTGAAAGTTTGGGACCGCTTTTG ATTCATTGCTCCGTTTTATTGAAGTTTGCTGAAACTTTTGAACAATTCTT AAGGTAGGCACgataaaagaaattgaaatctGATAGCATTAGATAAATTT TTCAGGAAAGTTTTTAGCCATTTTAGGGTACTCACTAAGTGGTCAAAGGG AACAATCTGGTAAGCCCTTCCCATTTAGTATCTTGAAAGATTGCTCACTG GTTTTATAATCAATTTATCTATTTTAGATTGTACGATGTTAGGTCAATAT CAAATGAAGGTTACTTTAATGTCATGTTATTTCTAAAACATTCATCTGTC GAGCTTAACGGGACTGTTAAGGGTGACTTCTTCCAAAACACGAGAATGGG ACGACATTATCTTTTACAACGATTTCAGATTCACAAGAGATCTGTAGCGG TGATAACATCGCACTTGGAAAGTCTCGGAGATGGATCTAAACGAAGACAA AATCAATtgaagttttgtttacaaaaaatgaTCCAGTCCCCGAATGATTA CAATGTGATTTTCTCAGGTGATATGAATTTAAGAGATTACGAGGTACAAA ATTTAGGTGGACTACCAGTCATATTACGGACGCATGGGAAGCAATGGGGA AAAACCCCGCAACCGAATACACATTTGATCTTGAGTTAAATAACAATAAA TACCTCCCAGATAACCCTCAAAAACGTTTTGATCGTATGTATTATAAAAG AACTGAATCGATTGCTGTTCAATGTGTTGGTTTCGAACTGGTTGGACTGG AGAGGTTGCCCTGTGGGATGTTCACAAGTGACCATTTTGGAATGTTAGGA AAATTcgcttttttagatttttaactACTTTTCATCTTATTTTGTGCAAA AGTAAAAGTTAGATAACTAACCTTCCATGATGACGGGGAAACAGCCATTT TATAAAGGTTGGTATTGAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045216XLOC_045216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072853-exon-scaffold_86-1491911889:299831..300202TCONS_00072853-exon-scaffold_86-1491911889:299831..300202Clytia hemisphaericaexon
TCONS_00072853-exon-scaffold_86-1510915933:299831..300202TCONS_00072853-exon-scaffold_86-1510915933:299831..300202Clytia hemisphaericaexon
TCONS_00072853-exon-scaffold_86-1575043694:299831..300202TCONS_00072853-exon-scaffold_86-1575043694:299831..300202Clytia hemisphaericaexon
TCONS_00072853-exon-scaffold_86-1491911889:300809..301354TCONS_00072853-exon-scaffold_86-1491911889:300809..301354Clytia hemisphaericaexon
TCONS_00072853-exon-scaffold_86-1510915933:300809..301354TCONS_00072853-exon-scaffold_86-1510915933:300809..301354Clytia hemisphaericaexon
TCONS_00072853-exon-scaffold_86-1575043694:300809..301354TCONS_00072853-exon-scaffold_86-1575043694:300809..301354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:299831..301354 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237952 0.365163 0.522294 0.151612 0.876201 0.358774 0.843585 0.812521 0.709027 0.240523 0 0.579885 0.382648 1.05645 0.402567 1.20474 1.34047 0.891421 0 0 0.309241 0 0.812576 1.08311 1.29439 1.42851 0.295356 0 0.196874 0.271968
Blast
BLAST of TCONS_00072853 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.715e-24
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  331 STTVIHHFSDISINIHKRSVAVITSHLESLGDGSKRRQNQLKFCLQKMIQSPNDYNVIFSGDMNLRDYEVQNLGGLP 561
            ST ++ +   + +N+    + ++TSHLES    +  R NQLK  L+KM ++P    VIF+GD NLRD EV   GGLP
Sbjct:  201 STKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLP 277          

HSP 2 Score: 59.6918 bits (143), Expect = 4.715e-24
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  561 SHITDAWEAMGKNPATEYTFDLELNNNKYLPDNPQKRFDRMYYK-RTESIAVQCVGFELVGLERLPCGMFTSDHFGM 788
            ++I D WE +GK    +YT+D ++N+N  +    + RFDR++++   E   +     +L+GLE+L CG F SDH+G+
Sbjct:  278 NNIVDVWEFLGKPKHCQYTWDTQMNSNLGITAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGL 354          
The following BLAST results are available for this feature:
BLAST of TCONS_00072853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP24.715e-2442.86Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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