TCONS_00072850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072850
Unique NameTCONS_00072850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072850 ID=TCONS_00072850|Name=TCONS_00072850|organism=Clytia hemisphaerica|type=transcript|length=1959bp
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTGCTTCATAT
CATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGATATGGAAGT
CCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGGAAGTCGTTGTACTGA
GTGATGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTA
CCGAAGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCT
ATTGAATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGA
AAGCAAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAAT
GACAAAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCA
AACAAATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacg
atgatgatttAGCGTTTTACGGAATCTCAGCTCAGGAAGATGTTTCATCT
AAAGCTTCTCCGTCAGTAGCTCCACCTCAAGAAGGTTCCAAAGAGTTCAC
AGTGCTGTCTTGGAACATTGATGGTTTGGAAGACGAATATTTGATGGAGA
GATTCCAAGGAGCTCTGAAAGACATCTTGAAAAAATTACCGACCATTGTG
ATGCTTCAAGAAGTTGTTCAACAAACATTCCTctctctttttattctctt
cCCTCTTTACGTGATTCGAACATTGGAGCACGATGGTTATTTCAATGTAA
TCATGTTCCTAAAGAAACCGCACGTGAAAGTCATTGGTGAGTTGGACGGT
TGGCATTTCTACTCTTCCCAAATGGATCGTCACTGTTTGTTACAAAAACT
ATACATTCATGGAAAACCTGTTACagtgatgacgtcacacttGGAAAGTT
TAAAAGAATGTGCTGCAGAGagacaaaaacaattgaaacaatgttttgaa
acaataaCAGACTCGCCGAGCGACAcaaacttcatttttgctggTGACTT
GAATATGAGGGCGGAAGATTTGAGACAGGTTGGTGGGATCCCGCCCAAAA
TTACAGACGCCTGGGAAACGGCTGGAGAAGATCCAAATGCAAAGTTTACT
TGGGATCTGGAACTGAATGATAATAAAAAATTCGGCGGTAATCGTAAACC
ACGTGCGCGCTTCGATCGAATGTATTTCAAAAGAGCACAATCGAATCCAA
TGCAATGTATTGGATTTGAATTGATCGGTTTGGAGAGATTGTCTTGTGGG
ATGTTCCCAAGTgatcattttggaattttaagcAAATTCATTCTTCCAGA
TGACTGACGAGGAATTATATggtgaaaaaatctttttcatcatACGTTTA
ATTCCCTATGATATTATTTTTGGAcatacctcggaggtcctataaattaa
ctgatgtccgtccgttcatccgtccgtccgtccgtctgttatcagctttt
ctcaggattggctcattagttgtttctaattttttgctcaaagatgcgta
ttcgcaatgcttaaaacatgaccgagttcgatttttgagaaaaaaaattt
tccagacaaaaatgccggaaatttccgtttttgcagatttttattacaaa
gattatttataagaatgtccacgattaagcatggttcaatttttaatgaa
actgattttggtacaggaactttctaaaaatcgctagaacagccgagaat
cgccggatttcttgaattattattattaatattattctgcattttcatac
tattgttgtcatttttcaattgtcttattacatatcttcaggtaggtcca
ttcagcatgtagcttgtttatATTATGTTTTACGTTTTCGAGATTGTAAA
TATCGTGTTCAtagattatatttttttatcaatcgTTTATTTAAAGAATT
ATATTATAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:293407..298845+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072850 ID=TCONS_00072850|Name=TCONS_00072850|organism=Clytia hemisphaerica|type=transcript|length=5439bp|location=Sequence derived from alignment at scaffold_86:293407..298845+ (Clytia hemisphaerica)
tagagagtaaatgaaaaaaataataaataaacgAAGAAAGAGATCAACGC
AGGTAAGACGTAAAGGGAAACTAAAACTTTGATAAAAACTTACCCATAAT
GTTTTTAGTAAGCTCAACTAGGAAGAAATTTTAAGCAATTGGACAATACC
AACCGAGAAAACACCCTTTTCAccgatttaaaatttttctttttgttaaa
gTCCATTTTACAACATAAGTAACCCTATAAATGAGCCAGTTGGTCATTCT
TCTATTATCAGTTTTTCttgtgattggctcattagctttttatgatattt
tgcatGACGATGctgatgatttgattttgttagGATTACTCAAATGGGAT
TAGTCGACGTAGTTCACAAATGTTGATTTTGTTTGATCTTCACTGACCAT
TATTTTACAGGAAAACGTCTCGAATCTTTCATTTTACAACAAAGCTCTTG
CTTCATATCATCGAATGTAAAGTTCACAATGATTGAGAAGATAGGGTGAT
ATGGAAGTCCCAACCTCGTCTACTGCAAAGCGAAAGCAAAGGTTTTTTAG
TACCTTGTTGACAAATTTCTCTTCGCGAACCAATGTTTTGTAAATCAATT
TAACCAGATTAGTTGTTCAGCTCAGTAGAGTAtcaagtaataagattctt
ggCTTTTACACATGTTTTATCCAAGTTTGGTTTTTTTGAAATAcactatt
ttttttctcttgtcGTTCAATTTTGTTAGGGAAGTCGTTGTACTGAGTGA
TGACGACAATGATAAAGAAGATGGCGCCGTCGCTAATCTGCTGGTACCGA
AGAAAACCGAAACAGAGAATTGCGATGGAGACGATCTTACTCATCTATTG
AATGACAAAGATAATGACATCATCGTCAACCAACCGGTACCGAAGAAAGC
AAAAACAAATGACATTGGTGGAGATGACCTCACTTATTTATTGAATGACA
AAGATGACGACATCATCGCCAACCAACCGGTACCGAAGAAAGCCCAAACA
AATGATAGTGGGAAAGATGACCTCACTCATTTACTgaatgatgacgatga
tgatttAGCGTTTTACGGAATCTCAGTAAGCTCTAAGgacaattcaaatt
ttacttAAAGATAAACAATTGATATGCTATATTGCTTTAATTGATCTTGG
TCAATCAACGTGGTATTCTATCTAGTTGTCGATACAATAACACTAAGAGA
GCCCTGTTGTAccatataaataaaaaattgattggAGTACCGCAAATTTT
TTCCGTCAGTAGATgcagacctgatttagcggccgaagacctgattaGAA
AGTTACCGGCCTAATCTGAAGTTAGGGTAGTATGAATATATTGCACCTCT
CGGAATAGCATCAGTTGCGATGGCCCAGTGGTTACCACAGTGGTCTTGTA
GACGGGAGATGAGTAGTTCAATATGAGGTATTCGCAttaatttcattctt
tttagtttaaaatcttttaacttgttttttttttcaaaacatttccattg
aaacatcatataaAAATCTTGCTTGAATTCATATAAAGGATATAAAACAA
ATTTCTACTCAATTTATTTTCTGCAAGTCTTCGGCCTAGATACGAACGCT
AAATCAGGTCTGTGACCGTTAGTTTAGGTTTGCGTTCGCTGATTGAAAAG
GAATCTGTGGAGGTTCGTGCATATAAAAGTACCCCACATCTGTTATATAA
CTGTATCATTTTAATTCGTTAATGATTTTATTATTCAGGCTCAGGAAGAT
GTTTCATCTAAAGCTTCTCCGTCAGTGTAAGCATCATATTTTGTTAAAGC
AGAATGCAGTACCCTTTTTACAAAGACTTTTGTCCTGTGTTTCacaaaaa
ttagtgaaaatgggggggggggttataaATGAATTAAATTCAACAAAtca
agtctttttttttgctccATTCGCAAAAGTGAATActcgcgaaattcaaa
aatttcggcAAAAGCTTTTTTACGCAAAAGATTTTCCCCTAGAACTATGT
TTTTGCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGC
TCCACCTCAAGAAGGTTCAAAAGAGTTCACAGTGCTGTCATGGAACATTG
ATGGTTTGGAAGAAGAATATTTGATGGAAAGATTCCAAGGAGCTCTGAAA
GACATCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCA
ACAAACATTCCTctctctttttattctcttcCCGTAAGTCCTAATTTCTG
ATTTTGAAAATGTCGTGTATTCCTTATCACTTGGAATAACTATTTGCTTC
TTTTCAGTACCCCTCTTTAGAGAAAAGCCGACGGGAAAAGATTtccaata
aattttattttattgaataaacGTCTTTTCTCTAGAAGGGACGTGAATCT
TATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGACTGG
CAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGTATGA
AGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTGACCT
Ttttataccctggaccaagtttctcaatcccggccaagcaaaatctttga
tcagagttttttgaaaagtggtaccctaatggcggcactgaTCAATGTgt
aatgcatcgagagcgctagatctactttccctcgaaaacttttgatgatg
tagcggcgttaaggccggcgcaaatgaatccaacattcaatccaacattt
ccaattcattgttggacgaaatgttggacgaaaagtcacgtggaaaaatt
tgaaaagttgcatgaaaagtcatttgcgcaaAAACNGGAACTATGTTTTT
GCAATATACGttcaatatcaaaaatctttttcttgtgCTATAGAGCTCCA
CCTCAAGAAGGTTCCAAAGAGTTCACAGTGCTGTCTTGGAACATTGATGG
TTTGGAAGACGAATATTTGATGGAGAGATTCCAAGGAGCTCTGAAAGACA
TCTTGAAAAAATTACCGACCATTGTGATGCTTCAAGAAGTTGTTCAACAA
ACATTCCTctctctttttattctcttcCCGTAAGTCCTAatttctgattt
tgaaaaatgtcgtGTATTCCTTATCACTTGGAATAACTACTTGCTTCTTT
TCAGTATCCCCGACGGGAAAAGATTTCCaataaattttattattattaaa
aaaaaaaacttttttattgaaTAAACGTCTTTTCTCTAGAAGGGACGTGA
ATCTTATAGTTGTAAGTTACTGTAAGGAAGTTCGTATTTGTCTGATATGA
CTGGCAATAGCAAAACCCAATTGTTTTCGAACCCCTAGTCCCCATTTTGT
ATGAAGGAGCTGCCATCGAAAATCTTATTTATTAGGGTGTTTACTCGCTG
ACCTTtttataccctggaccaagtttctcaattccggccaagcaaaatct
ttgatcagagttttttgaaaagtggtaccctaatggcggcactgaTCAAT
GTgtaatgcatcgagagcgctagatctactttccctcgaaaacttttgat
gatgtagcggcgttaaggccggcgcaaatgaatccaacatttccaattca
ttgttggacgaaatgttggacgaaaagtcacgtggaaaaatttgaaaagt
tgcatgaaaagtcatttgcgcaaaaatgtcaaacattttcatccaacacg
ATTACGCAAATTCATACAACATTGAAACCaacataaaagtgacgtcaatc
tcattaaaaaatgttggatgaaaagttTGACGGCGATCAAtcttcatcca
acatgatttccaacaattttcttaaaaagttgcaattttaagACTTGCGC
AAACGaacccaacatttgatccaacaataatgtgggatcaaatgttggat
tcatttgcaGAGGTTATTggaacactgcaatggcttctttacgggcacca
attcaaaaaaaaaaccttagatcaaagatggcggatatatcTTGggccag
ggatatataaaggtcagtgggttcACTACATAAAAGCACAATCATCAACT
GAGTGAATATAAGTGAACTAAAATTTTGATTCACAAGTTCTGTCAGTtgc
cttttcaacattttgatactgggaaaattgaaaacaatagGTTTCAAAAT
CACCTTAAAATAATGGGATAAGTAAGAAAAAGGAATATAAAACGCCTTTA
TACACCTCCAAGTTTACGGACGGTTCATTTTAGTCTTTACGTGATTCGAA
CATTGGAGCACGATGGTTATTTCAATGTAATCATGTTCCTAAAGAAACCG
CACGTGAAAGTCATTGGTGAGTTGGACGGTTGGCATTTCTACTCTTCCCA
AATGGATCGTCACTGTTTGTTACAAAAACTATACATTCATGGAAAACCTG
TTACagtgatgacgtcacacttGGAAAGTTTAAAAGAATGTGCTGCAGAG
agacaaaaacaattgaaacaatgttttgaaacaataaCAGACTCGCCGAG
CGACAcaaacttcatttttgctggTGACTTGAATATGAGGGCGGAAGATT
TGAGACAGGTTGGTGGGATCCCGCCCAAAATTACAGACGCCTGGGAAACG
GCTGGAGAAGATCCAAATGCAAAGTTTACTTGGGATCTGGAACTGAATGA
TAATAAAAAATTCGGCGGTAATCGTAAACCACGTGCGCGCTTCGATCGAA
TGTATTTCAAAAGAGCACAATCGAATCCAATGCAATGTATTGGATTTGAA
TTGATCGGTTTGGAGAGATTGTCTTGTGGGATGTTCCCAAGTgatcattt
tggaattttaagcAAATTCATTCTTCCAGATGACTGACGAGGAATTATAT
ggtgaaaaaatctttttcatcatACGTTTAATTCCCTATGATATTATTTT
TGGAcatacctcggaggtcctataaattaactgatgtccgtccgttcatc
cgtccgtccgtccgtctgttatcagcttttctcaggattggctcattagt
tgtttctaattttttgctcaaagatgcgtattcgcaatgcttaaaacatg
accgagttcgatttttgagaaaaaaaattttccagacaaaaatgccggaa
atttccgtttttgcagatttttattacaaagattatttataagaatgtcc
acgattaagcatggttcaatttttaatgaaactgattttggtacaggaac
tttctaaaaatcgctagaacagccgagaatcgccggatttcttgaattat
tattattaatattattctgcattttcatactattgttgtcatttttcaat
tgtcttattacatatcttcaggtaggtccattcagcatgtagcttgttta
tATTATGTTTTACGTTTTCGAGATTGTAAATATCGTGTTCAtagattata
tttttttatcaatcgTTTATTTAAAGAATTATATTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045215XLOC_045215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072850-exon-scaffold_86-1491911889:293407..293458TCONS_00072850-exon-scaffold_86-1491911889:293407..293458Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1510915933:293407..293458TCONS_00072850-exon-scaffold_86-1510915933:293407..293458Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1575043694:293407..293458TCONS_00072850-exon-scaffold_86-1575043694:293407..293458Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1491911889:293817..293947TCONS_00072850-exon-scaffold_86-1491911889:293817..293947Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1510915933:293817..293947TCONS_00072850-exon-scaffold_86-1510915933:293817..293947Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1575043694:293817..293947TCONS_00072850-exon-scaffold_86-1575043694:293817..293947Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1491911889:294136..294481TCONS_00072850-exon-scaffold_86-1491911889:294136..294481Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1510915933:294136..294481TCONS_00072850-exon-scaffold_86-1510915933:294136..294481Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1575043694:294136..294481TCONS_00072850-exon-scaffold_86-1575043694:294136..294481Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1491911889:295145..295182TCONS_00072850-exon-scaffold_86-1491911889:295145..295182Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1510915933:295145..295182TCONS_00072850-exon-scaffold_86-1510915933:295145..295182Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1575043694:295145..295182TCONS_00072850-exon-scaffold_86-1575043694:295145..295182Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1491911889:296300..296485TCONS_00072850-exon-scaffold_86-1491911889:296300..296485Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1510915933:296300..296485TCONS_00072850-exon-scaffold_86-1510915933:296300..296485Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1575043694:296300..296485TCONS_00072850-exon-scaffold_86-1575043694:296300..296485Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1491911889:297640..298845TCONS_00072850-exon-scaffold_86-1491911889:297640..298845Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1510915933:297640..298845TCONS_00072850-exon-scaffold_86-1510915933:297640..298845Clytia hemisphaericaexon
TCONS_00072850-exon-scaffold_86-1575043694:297640..298845TCONS_00072850-exon-scaffold_86-1575043694:297640..298845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:293407..298845 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.152194	0	0.406127	0.305653	0.472339	0.905077	0.58634	6.10621e-09	0.535264	1.20505	0	0	0	0	0	0	0	0	0	0	5.04943	5.07782	0	0.100589	0	0
Blast
[Close]
BLAST of TCONS_00072850 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.915e-46
Identity = 96/256 (37.50%), Postives = 143/256 (55.86%), Query Frame = 2 
Query:  578 QEGSKEFTVLSWNIDGLEDEYLMERFQGALKDILKKLPTIVMLQEVVQQTFLSLFILFPLYVIRTLEHDGYFNVIMFLKKPHVKVIGELDGWHFYSSQMDRHCLLQKLYIHGKPVTVMTSHLESLKECAAERQKQLKQCFETITDSPSDTNFIFAGDLNMRAEDLRQVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 1339
            QE    F++++WNIDGL+   L ER +G    +    P ++ LQEV+   +  L      Y I T   +GYF  IM LKK  VK+  + +   F S++M R+ L   + + G  + +MTSHLES +  AAER  QLK   + + ++P     IFAGD N+R  ++ + GG+P  I D WE  G+  + ++TWD ++N N   G     + RFDR++F RA +     I    +L+GLE+L CG FPSDH+G+L   
Sbjct:  108 QENGSMFSLITWNIDGLDLNNLSERARGVCSYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358
The following BLAST results are available for this feature:
BLAST of TCONS_00072850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP27.915e-4637.50Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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