TCONS_00072842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072842
Unique NameTCONS_00072842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072842 ID=TCONS_00072842|Name=TCONS_00072842|organism=Clytia hemisphaerica|type=transcript|length=965bp
GGATATGCCAATCGATAAATGCTACACAGTTAAATTGACTATATTTTGAT
ACAGtgGTTAGTACAAATGTGCGACAGTAATTTATCAAAGTCATATCACC
ATCATGCATGATGCATTTGAATGTGTGGCTATCTTGGAAAGATTGCCACT
GGAGATTGACTGCATTGCTAGTTCAGGACAAACACTTTTTGTTGGCACCA
CCAAAGGACATCTACTAGTCTACAAAATCCAAGTAGATGCTTCTACATCC
AGAAATGGGGATACAAAATNCAAACACTTTTTGTTGGCACCACCAAAGGA
CATCTACTAGTCTACAAAATCCAAGTAGATGCTTCTACATCCAGAAATGG
GGATACAAAATTTGAAGTGGAGTTATTACGATCAAACAAAGCTTTTGGTC
GTAAACCAATTTTACAATTAGTGGCACTCAAGGAATATGATATTTTGATT
AGCTTAAGTGATGGGTGTATCAATGTTCATGATTTCTTTGAGCCAAATAA
CACTCCAAATAATTACAACCATAAACAAAGCTTTCCGCGAAGCAAAGGTA
TCACTCACTTCTCCATTGACCATTCAACTCTCAATGATCCCACTTATCCA
GTTCGGGTATGTGCAATTTCTAAAAGAAAGCTTCAAACATTCTACTGGCA
AAAGGGCAAATTTGTTGAGTTGTATAATGAATTGACTTTACCGGATACAC
CAAGAGTTGCTGTATGGATGGGTGATTATATTTGTTTTGCCATGAAAAAA
GATTATTCTTTGATGAAAGCTGATACAGGTTAGTGGAAAGTTAAATTTgc
tatttctaaaatttgctataCACCCACTCGCTTTAATTAAGTGTATACAC
TTATCTTTGCTGAGGATAGGGAGGGgacttagaaaaaaacaattagtggc
atatgtacaaaagctgccaaattatataaaaagaagaaaaaatcaaaaat
tttgaccgggGACCC
Run BLAST on NCBI

transcript from alignment at scaffold_86:282691..284075+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072842 ID=TCONS_00072842|Name=TCONS_00072842|organism=Clytia hemisphaerica|type=transcript|length=1385bp|location=Sequence derived from alignment at scaffold_86:282691..284075+ (Clytia hemisphaerica)
GGATATGCCAATCGATAAATGCTACACAGTTAAATTGACTATATTTTGAT ACAGGTATAGTTGggaaaaacattatcaataacaTTACAGGGAAAAAAAG AACTATAGCGCTTTGAGACTAATTTTATGTCATTNGTTGggaaaaacatt atcaataacaTTACAGGGAAAAAAAGAACTAGCGCTTTGAGACTAATTTT ATgtcattttttactttcttaactaaggtgttattattttttaatcattg atttttaaaatctgttttttgctgattttacACAAACTACAGACCTTAGT TACTGTGAATACCGTTTTGCTGAGGCTGCAAAAAAAGTGCTCTGGCTGAA TTGTCAGTGCTGATACATCGATCTATCCttctcaaataaaatttttgact tttcctTCCCAGATAGATTGATCGTAAGTTTTTAGCTATCCCCCCTTTCA CAAAttgacttttttatattttagtgGTTAGTACAAATGTGCGACAGTAA TTTATCAAAGTCATATCACCATCATGCATGATGCATTTGAATGTGTGGCT ATCTTGGAAAGATTGCCACTGGAGATTGACTGCATTGCTAGTTCAGGACA AACACTTTTTGTTGGCACCACCAAAGGACATCTACTAGTCTACAAAATCC AAGTAGATGCTTCTACATCCAGAAATGGGGATACAAAATNCAAACACTTT TTGTTGGCACCACCAAAGGACATCTACTAGTCTACAAAATCCAAGTAGAT GCTTCTACATCCAGAAATGGGGATACAAAATTTGAAGTGGAGTTATTACG ATCAAACAAAGCTTTTGGTCGTAAACCAATTTTACAATTAGTGGCACTCA AGGAATATGATATTTTGATTAGCTTAAGTGATGGGTGTATCAATGTTCAT GATTTCTTTGAGCCAAATAACACTCCAAATAATTACAACCATAAACAAAG CTTTCCGCGAAGCAAAGGTATCACTCACTTCTCCATTGACCATTCAACTC TCAATGATCCCACTTATCCAGTTCGGGTATGTGCAATTTCTAAAAGAAAG CTTCAAACATTCTACTGGCAAAAGGGCAAATTTGTTGAGTTGTATAATGA ATTGACTTTACCGGATACACCAAGAGTTGCTGTATGGATGGGTGATTATA TTTGTTTTGCCATGAAAAAAGATTATTCTTTGATGAAAGCTGATACAGGT TAGTGGAAAGTTAAATTTgctatttctaaaatttgctataCACCCACTCG CTTTAATTAAGTGTATACACTTATCTTTGCTGAGGATAGGGAGGGgactt agaaaaaaacaattagtggcatatgtacaaaagctgccaaattatataaa aagaagaaaaaatcaaaaattttgaccgggGACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045213XLOC_045213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072842-exon-scaffold_86-1491911889:282691..282744TCONS_00072842-exon-scaffold_86-1491911889:282691..282744Clytia hemisphaericaexon
TCONS_00072842-exon-scaffold_86-1510915933:282691..282744TCONS_00072842-exon-scaffold_86-1510915933:282691..282744Clytia hemisphaericaexon
TCONS_00072842-exon-scaffold_86-1575043694:282691..282744TCONS_00072842-exon-scaffold_86-1575043694:282691..282744Clytia hemisphaericaexon
TCONS_00072842-exon-scaffold_86-1491911889:283165..284075TCONS_00072842-exon-scaffold_86-1491911889:283165..284075Clytia hemisphaericaexon
TCONS_00072842-exon-scaffold_86-1510915933:283165..284075TCONS_00072842-exon-scaffold_86-1510915933:283165..284075Clytia hemisphaericaexon
TCONS_00072842-exon-scaffold_86-1575043694:283165..284075TCONS_00072842-exon-scaffold_86-1575043694:283165..284075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:282691..284075 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.58359 3.30605 1.94176 1.50865 21.5088 17.5452 16.8934 17.171 8.15645 13.105 10.2428 5.81375 6.39165 4.54071 7.91246 8.65462 8.01488 7.59651 4.51811 6.38462 6.98576 6.864 13.9228 15.7949 9.16653 9.61586 6.03522 5.02302 14.2218 14.1455
Blast
BLAST of TCONS_00072842 vs. Swiss-Prot (Human)
Match: VPS39 (Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.468e-24
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  277 LFVGTTKGHLLVYKIQVD------ASTSRNGDTKFEVELLRSNKAFGRKPILQLVALKEYDILISLSDGCINVHDFFEPNNTPNNYNHKQSFPRSKGITHFSIDHSTLNDPTYPVRVCAISKRKLQTFYWQKGKFVELYNELTLPDTPRVAVWMGDYICFAMKKDYSLMKAD 774
            L VGT +GHLL+Y+I+ D      AS       +FEV L +SNK F +K I Q+  + ++ IL+SL +  I VHD          +    +  ++KG + F+ D          +R+C   K+KLQ ++W+  +F EL  + ++PD P+   W  + IC   K+DY L++ D
Sbjct:   28 LLVGTKQGHLLLYRIRKDVVPADVASPESGSCNRFEVTLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLL-------TFQQITTVSKAKGASLFTCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD 191          
The following BLAST results are available for this feature:
BLAST of TCONS_00072842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS398.468e-2433.14Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 P... [more]
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