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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072842 ID=TCONS_00072842|Name=TCONS_00072842|organism=Clytia hemisphaerica|type=transcript|length=965bp
GGATATGCCAATCGATAAATGCTACACAGTTAAATTGACTATATTTTGAT
ACAGtgGTTAGTACAAATGTGCGACAGTAATTTATCAAAGTCATATCACC
ATCATGCATGATGCATTTGAATGTGTGGCTATCTTGGAAAGATTGCCACT
GGAGATTGACTGCATTGCTAGTTCAGGACAAACACTTTTTGTTGGCACCA
CCAAAGGACATCTACTAGTCTACAAAATCCAAGTAGATGCTTCTACATCC
AGAAATGGGGATACAAAATNCAAACACTTTTTGTTGGCACCACCAAAGGA
CATCTACTAGTCTACAAAATCCAAGTAGATGCTTCTACATCCAGAAATGG
GGATACAAAATTTGAAGTGGAGTTATTACGATCAAACAAAGCTTTTGGTC
GTAAACCAATTTTACAATTAGTGGCACTCAAGGAATATGATATTTTGATT
AGCTTAAGTGATGGGTGTATCAATGTTCATGATTTCTTTGAGCCAAATAA
CACTCCAAATAATTACAACCATAAACAAAGCTTTCCGCGAAGCAAAGGTA
TCACTCACTTCTCCATTGACCATTCAACTCTCAATGATCCCACTTATCCA
GTTCGGGTATGTGCAATTTCTAAAAGAAAGCTTCAAACATTCTACTGGCA
AAAGGGCAAATTTGTTGAGTTGTATAATGAATTGACTTTACCGGATACAC
CAAGAGTTGCTGTATGGATGGGTGATTATATTTGTTTTGCCATGAAAAAA
GATTATTCTTTGATGAAAGCTGATACAGGTTAGTGGAAAGTTAAATTTgc
tatttctaaaatttgctataCACCCACTCGCTTTAATTAAGTGTATACAC
TTATCTTTGCTGAGGATAGGGAGGGgacttagaaaaaaacaattagtggc
atatgtacaaaagctgccaaattatataaaaagaagaaaaaatcaaaaat
tttgaccgggGACCC Run BLAST on NCBI transcript from alignment at scaffold_86:282691..284075+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072842 ID=TCONS_00072842|Name=TCONS_00072842|organism=Clytia hemisphaerica|type=transcript|length=1385bp|location=Sequence derived from alignment at scaffold_86:282691..284075+ (Clytia hemisphaerica)
GGATATGCCAATCGATAAATGCTACACAGTTAAATTGACTATATTTTGAT
ACAGGTATAGTTGggaaaaacattatcaataacaTTACAGGGAAAAAAAG
AACTATAGCGCTTTGAGACTAATTTTATGTCATTNGTTGggaaaaacatt
atcaataacaTTACAGGGAAAAAAAGAACTAGCGCTTTGAGACTAATTTT
ATgtcattttttactttcttaactaaggtgttattattttttaatcattg
atttttaaaatctgttttttgctgattttacACAAACTACAGACCTTAGT
TACTGTGAATACCGTTTTGCTGAGGCTGCAAAAAAAGTGCTCTGGCTGAA
TTGTCAGTGCTGATACATCGATCTATCCttctcaaataaaatttttgact
tttcctTCCCAGATAGATTGATCGTAAGTTTTTAGCTATCCCCCCTTTCA
CAAAttgacttttttatattttagtgGTTAGTACAAATGTGCGACAGTAA
TTTATCAAAGTCATATCACCATCATGCATGATGCATTTGAATGTGTGGCT
ATCTTGGAAAGATTGCCACTGGAGATTGACTGCATTGCTAGTTCAGGACA
AACACTTTTTGTTGGCACCACCAAAGGACATCTACTAGTCTACAAAATCC
AAGTAGATGCTTCTACATCCAGAAATGGGGATACAAAATNCAAACACTTT
TTGTTGGCACCACCAAAGGACATCTACTAGTCTACAAAATCCAAGTAGAT
GCTTCTACATCCAGAAATGGGGATACAAAATTTGAAGTGGAGTTATTACG
ATCAAACAAAGCTTTTGGTCGTAAACCAATTTTACAATTAGTGGCACTCA
AGGAATATGATATTTTGATTAGCTTAAGTGATGGGTGTATCAATGTTCAT
GATTTCTTTGAGCCAAATAACACTCCAAATAATTACAACCATAAACAAAG
CTTTCCGCGAAGCAAAGGTATCACTCACTTCTCCATTGACCATTCAACTC
TCAATGATCCCACTTATCCAGTTCGGGTATGTGCAATTTCTAAAAGAAAG
CTTCAAACATTCTACTGGCAAAAGGGCAAATTTGTTGAGTTGTATAATGA
ATTGACTTTACCGGATACACCAAGAGTTGCTGTATGGATGGGTGATTATA
TTTGTTTTGCCATGAAAAAAGATTATTCTTTGATGAAAGCTGATACAGGT
TAGTGGAAAGTTAAATTTgctatttctaaaatttgctataCACCCACTCG
CTTTAATTAAGTGTATACACTTATCTTTGCTGAGGATAGGGAGGGgactt
agaaaaaaacaattagtggcatatgtacaaaagctgccaaattatataaa
aagaagaaaaaatcaaaaattttgaccgggGACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072842-exon-scaffold_86-1491911889:282691..282744 | TCONS_00072842-exon-scaffold_86-1491911889:282691..282744 | Clytia hemisphaerica | exon |
| TCONS_00072842-exon-scaffold_86-1510915933:282691..282744 | TCONS_00072842-exon-scaffold_86-1510915933:282691..282744 | Clytia hemisphaerica | exon |
| TCONS_00072842-exon-scaffold_86-1575043694:282691..282744 | TCONS_00072842-exon-scaffold_86-1575043694:282691..282744 | Clytia hemisphaerica | exon |
| TCONS_00072842-exon-scaffold_86-1491911889:283165..284075 | TCONS_00072842-exon-scaffold_86-1491911889:283165..284075 | Clytia hemisphaerica | exon |
| TCONS_00072842-exon-scaffold_86-1510915933:283165..284075 | TCONS_00072842-exon-scaffold_86-1510915933:283165..284075 | Clytia hemisphaerica | exon |
| TCONS_00072842-exon-scaffold_86-1575043694:283165..284075 | TCONS_00072842-exon-scaffold_86-1575043694:283165..284075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:282691..284075 + |
Blast
BLAST of TCONS_00072842 vs. Swiss-Prot (Human)
Match: VPS39 (Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 8.468e-24 Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 1
Query: 277 LFVGTTKGHLLVYKIQVD------ASTSRNGDTKFEVELLRSNKAFGRKPILQLVALKEYDILISLSDGCINVHDFFEPNNTPNNYNHKQSFPRSKGITHFSIDHSTLNDPTYPVRVCAISKRKLQTFYWQKGKFVELYNELTLPDTPRVAVWMGDYICFAMKKDYSLMKAD 774
L VGT +GHLL+Y+I+ D AS +FEV L +SNK F +K I Q+ + ++ IL+SL + I VHD + + ++KG + F+ D +R+C K+KLQ ++W+ +F EL + ++PD P+ W + IC K+DY L++ D
Sbjct: 28 LLVGTKQGHLLLYRIRKDVVPADVASPESGSCNRFEVTLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLL-------TFQQITTVSKAKGASLFTCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD 191
The following BLAST results are available for this feature:
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