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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072830 ID=TCONS_00072830|Name=TCONS_00072830|organism=Clytia hemisphaerica|type=transcript|length=2278bp
TTTTCTTACACCTATTATAACATGGGGACTCGAAACTTGTAATGACTTGA
AAATTATGGGTAATCAGAAGGTCTGAGTGCAGCAAGCTGAGAAAACATTC
TCCACTTTGCGATATACATGCTAATATATAATTTTGATAGagataaaatc
tttcaaaaagtaGCCAAACATAAATTTTGTGATGCAAAATACTATAAACT
GAGTGTTTATAGACTGTCGACGAAGAGAGCTGTTAAATCAATGATAAGgt
tgtttcttttttcaattttttttccattgttCTATCGTCTCTAAAAAAGG
ATGACATGATTAGAAGGGGTTTGTGGAGACTAGACCAGGTTACAGTTTTA
TTTGTATATATATAGTTAGATTGACTggtaattcaaatttttgcttttat
tttggAAATTGTTCACTCACATCAGATTATCCTTTTGGCTTGcaaaattt
cattgttttctatCTTTAGAATGAAATGTTAAATAATCATGTGGTTTGTT
TACTTATTGACATTTCTGGTAACCCTAATCACTACATTATACATTATATG
GAGAATAAATATAGCTAAATTTGCTGGTATAAAGATTGCTCCTCAACATT
ATCCTATAGTTGGCTCATGCTTTCATATAGAAACAGAAGCAccaaagttt
ttcaaacaaCTTCGTGATTGGGTCCCAATAAACGGCTATTTATTTGTTAT
ATGGTTATTTTGGTATCCTTTTGTTTGGATAGGAAAAGTTGAAGTTGCAG
AAGCCGTGCTTAAAAGTCAAGATATCATTACCAAATCTTTGGTGTATGAT
TTCCTTCACCCTTGGTTTGGCActggtctattgacctctactCACCAAAA
ATGGAAAGTCAGGCGCAGAGCCATAACTCCCTCtttccatttcaatattt
tgaatgaGTTCCAGAAAATCTTTATCACACAAGCTGAAGTGCTAGCAGAA
AAATTCAGAATCCTGGCCGATAGTGGAGAATCTTTTGATGTTCAGATCCC
AGTAGGTCTAGCAGCTTTGGATATTATCTGCGAGACTGCAATGGGTGTTA
CAATCAATGCTCAAAGTGATGCTGACTCTGAATATGTTAATGCTATCAAT
GCTGGAAACAAGTTGCTTCAAGAACGCCAAAAATATCCATGGCTTTGGCC
TGATTTCATATACTGGAAAACTGGTtcaggaaaattttttagaGAGAAAT
TGAACATTTTGCAAGGTTTTACAACAAATGTCATTAATGATAAAGTAAAG
GAAAGAGGCTCGGATCAAGCTGCGGAAAAAAAAGCTAAAGCATTTATGGA
TATGTTGTTGGATCTatatgagaaaaatgaaatcgATATTGAAGGAGTTA
GAGAGGAGGTTGATACATTCATGTTTGAAGGTCACGATACAACTGCTGCT
GGCTTAAGCTGGACACTGTTCATGCTTGGTTTGTATCCAGAAATCCAACA
AAAGTTACACAATGAGATTGATAAAGTTGCTGATCAGGAGGGAGATTTGG
TTGAGAAAATAAAAAGCATCAAGTATTTGGAGTATGTTATTAAGGAAGGG
TTACGTCTACATCCTCCTGTGATGGTTTACGCTCGTGTTCTAGAGAAAGC
TGGTCAAATTGATGGTATTACCATGCCCAAAGGTACACAATTGGTGATTG
ATGCTTTTTCATTGCATACAAATCCAGAGTACTGGGATGAGCCAATGAAA
TTCAATCCTGAGCGGTTTTCAGAGGAGAAATATGTAAAGCGTAATCCATA
TTGTTATGTACCATTCTCAGCCGGTCCAAGAAATTGTATTGGGCAGAAAT
TTGCAATGTTGGAAGAGAAAGTTTTGTTGTATcatgttttgttaaatttt
gaagTAGTTGCCATGCAAAAAGAGGAAGATGTAGCtgcttgttttgaaat
cattcaTAAATCAGAAAACGGATTGATGGTTAAGTTGAAACACAGAAAAT
AAATATGGACTAAGATGAAGGAatgaacataaaatattttttattttatc
ttcaaattctcaACTCGGGCTACTTTTCGAAAGGTATGAttcatgtttgt
tttgaaaggacTTAGAACCCAGATCATACACCCaggcaaatttatttttg
gttATAATTCTTGGTTAAATATTAGGATCACTTTTCATGTGTATCTTTAA
CTGTTGCAGCTTTATTATTGGTATATTTTAATATGTATGCACTTTTAGTT
CCActcattttttaataaataaattccatatattttttttgctttttaaa
aatAGGTCTAGTCTGTCTTGCGTTAGAA Run BLAST on NCBI protein sequence of TCONS_00072830-protein >TCONS_00072830-protein ID=TCONS_00072830-protein|Name=TCONS_00072830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MWFVYLLTFLVTLITTLYIIWRINIAKFAGIKIAPQHYPIVGSCFHIETE
APKFFKQLRDWVPINGYLFVIWLFWYPFVWIGKVEVAEAVLKSQDIITKS
LVYDFLHPWFGTGLLTSTHQKWKVRRRAITPSFHFNILNEFQKIFITQAE
VLAEKFRILADSGESFDVQIPVGLAALDIICETAMGVTINAQSDADSEYV
NAINAGNKLLQERQKYPWLWPDFIYWKTGSGKFFREKLNILQGFTTNVIN
DKVKERGSDQAAEKKAKAFMDMLLDLYEKNEIDIEGVREEVDTFMFEGHD
TTAAGLSWTLFMLGLYPEIQQKLHNEIDKVADQEGDLVEKIKSIKYLEYV
IKEGLRLHPPVMVYARVLEKAGQIDGITMPKGTQLVIDAFSLHTNPEYWD
EPMKFNPERFSEEKYVKRNPYCYVPFSAGPRNCIGQKFAMLEEKVLLYHV
LLNFEVVAMQKEEDVAACFEIIHKSENGLMVKLKHRK Run BLAST on NCBI transcript from alignment at scaffold_86:163540..165991+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072830 ID=TCONS_00072830|Name=TCONS_00072830|organism=Clytia hemisphaerica|type=transcript|length=2452bp|location=Sequence derived from alignment at scaffold_86:163540..165991+ (Clytia hemisphaerica)
TTTTCTTACACCTATTATAACATGGGGACTCGAAACTTGTAATGACTTGA
AAATTATGGGTAATCAGAAGGTCTGAGTGCAGCAAGCTGAGAAAACATTC
TCCACTTTGCGATATACATGCTAATATATAATTTTGATAGagataaaatc
tttcaaaaagtaGCCAAACATAAATTTTGTGATGCAAAATACTATAAACT
GAGTGTTTATAGACTGTCGACGAAGAGAGCTGTTAAATCAATGATAAGgt
tgtttcttttttcaattttttttccattgttCTATCGTCTCTAAAAAAGG
ATGACATGATTAGAAGGGGTTTGTGGAGACTAGACCAGGTTACAGTTTTA
TTTGTATATATATAGTTAGATTGACTggtaattcaaatttttgcttttat
tttggAAATTGTTCACTCACATCAGATTATCCTTTTGGCTTGcaaaattt
cattgttttctatCTTTAGAATGAAATGTTAAATAATCATGTGGTTTGTT
TACTTATTGACATTTCTGGTAACCCTAATCACTACATTATACATTATATG
GAGAATAAATATAGCTAAATTTGCTGGTATAAAGATTGCTCCTCAACATT
ATCCTATAGTTGGCTCATGCTTTCATATAGAAACAGAAGCAccaaagttt
ttcaaacaaCTTCGTGATTGGGTCCCAATAAACGGCTATTTATTTGTTAT
ATGGTTATTTTGGTATCCTTTTGTTTGGATAGGAAAAGTTGAAGTTGCAG
AAGCCGTGCTTAAAAGTCAAGATATCATTACCAAATCTTTGGTGTATGAT
TTCCTTCACCCTTGGTTTGGCActggtctattgacctctactCACCAAAA
ATGGAAAGTCAGGCGCAGAGCCATAACTCCCTCtttccatttcaatattt
tgaatgaGTTCCAGAAAATCTTTATCACACAAGCTGAAGTGCTAGCAGAA
AAATTCAGAATCCTGGCCGATAGTGGAGAATCTTTTGATGTTCAGATCCC
AGTAGGTCTAGCAGCTTTGGATATTATCTGCGAGACTGCAATGGGTGTTA
CAATCAATGCTCAAAGTGATGCTGACTCTGAATATGTTAATGCTATCAAT
GCTGGAAACAAGTTGCTTCAAGAACGCCAAAAATATCCATGGCTTTGGCC
TGATTTCATATACTGGAAAACTGGTtcaggaaaattttttagaGAGAAAT
TGAACATTTTGCAAGGTTTTACAACAAATGTCATTAATGATAAAGTAAAG
GAAAGAGGCTCGGATCAAGCTGCGGAAAAAAAAGCTAAAGCATTTATGGA
TATGTTGTTGGATCTatatgagaaaaatgaaatcgATATTGAAGGAGTTA
GAGAGGAGGTTGATACATTCATGTTTGAAGGTCACGATACAACTGCTGCT
GGCTTAAGCTGGACACTGTTCATGCTTGGTTTGTATCCAGAAATCCAACA
AAAGTTACACAATGAGATTGATAAAGTTGCTGATCAGGAGGGAGATTTGG
TTGAGAAAATAAAAAGCATCAAGTATTTGGAGTATGTTATTAAGGAAGGG
TTACGTCTACATCCTCCTGTGATGGTTTACGCTCGTGTTCTAGAGAAAGC
TGGTCAAATTGATGGTATTACCATGCCCAAAGGTACACAATTGGTGATTG
ATGCTTTTTCATTGCATACAAATCCAGAGTACTGGGATGAGCCAATGAAA
TTCAATCCTGAGCGGTTTTCAGAGGAGAAATATGTAAAGCGTAATCCATA
TTGTTATGTACCATTCTCAGCCGGTCCAAGAAATTGTATTGGGCAGAAAT
TTGCAATGTTGGAAGAGAAAGTTTTGTTGTATcatgttttgttaaatttt
gaagTAGTTGCCATGCAAAAAGAGGAAGATGTAGCtgcttgttttgaaat
cattcaTAAATCAGAAAACGGATTGATGGTTAAGTTGAAACACAGAAAAT
AAATATGGACTAAGATGAAGGAatgaacataaaatattttttattttatc
ttcaaattctcaACTCGGGCTACTTTTCGAAAGGTATGAttcatgtttgt
tttgaaaggacTTAGAACCCAGATCATACACCCATTCAAACTTTACCAAA
TATCTCTCAAGGAATTGAAAATAACACAATATTGTCTTTCATTCATTTTT
GTTAAGCGATGATTTTTTCATTCAGGAGATATATAATAActtaatttatt
aatttttaaataaCATTTGAGCCAGCAGATACATATACTGTACTACTGCA
GGTACACaggcaaatttatttttggttATAATTCTTGGTTAAATATTAGG
ATCACTTTTCATGTGTATCTTTAACTGTTGCAGCTTTATTATTGGTATAT
TTTAATATGTATGCACTTTTAGTTCCActcattttttaataaataaattc
catatattttttttgctttttaaaaatAGGTCTAGTCTGTCTTGCGTTAG
AA Coding sequence (CDS) from alignment at scaffold_86:163540..165991+ >TCONS_00072830 ID=TCONS_00072830|Name=TCONS_00072830|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_86:163540..165991+ (Clytia hemisphaerica)
ATGTGGTTTGTTTACTTATTGACATTTCTGGTAACCCTAATCACTACATT
ATACATTATATGGAGAATAAATATAGCTAAATTTGCTGGTATAAAGATTG
CTCCTCAACATTATCCTATAGTTGGCTCATGCTTTCATATAGAAACAGAA
GCAccaaagtttttcaaacaaCTTCGTGATTGGGTCCCAATAAACGGCTA
TTTATTTGTTATATGGTTATTTTGGTATCCTTTTGTTTGGATAGGAAAAG
TTGAAGTTGCAGAAGCCGTGCTTAAAAGTCAAGATATCATTACCAAATCT
TTGGTGTATGATTTCCTTCACCCTTGGTTTGGCActggtctattgacctc
tactCACCAAAAATGGAAAGTCAGGCGCAGAGCCATAACTCCCTCtttcc
atttcaatattttgaatgaGTTCCAGAAAATCTTTATCACACAAGCTGAA
GTGCTAGCAGAAAAATTCAGAATCCTGGCCGATAGTGGAGAATCTTTTGA
TGTTCAGATCCCAGTAGGTCTAGCAGCTTTGGATATTATCTGCGAGACTG
CAATGGGTGTTACAATCAATGCTCAAAGTGATGCTGACTCTGAATATGTT
AATGCTATCAATGCTGGAAACAAGTTGCTTCAAGAACGCCAAAAATATCC
ATGGCTTTGGCCTGATTTCATATACTGGAAAACTGGTtcaggaaaatttt
ttagaGAGAAATTGAACATTTTGCAAGGTTTTACAACAAATGTCATTAAT
GATAAAGTAAAGGAAAGAGGCTCGGATCAAGCTGCGGAAAAAAAAGCTAA
AGCATTTATGGATATGTTGTTGGATCTatatgagaaaaatgaaatcgATA
TTGAAGGAGTTAGAGAGGAGGTTGATACATTCATGTTTGAAGGTCACGAT
ACAACTGCTGCTGGCTTAAGCTGGACACTGTTCATGCTTGGTTTGTATCC
AGAAATCCAACAAAAGTTACACAATGAGATTGATAAAGTTGCTGATCAGG
AGGGAGATTTGGTTGAGAAAATAAAAAGCATCAAGTATTTGGAGTATGTT
ATTAAGGAAGGGTTACGTCTACATCCTCCTGTGATGGTTTACGCTCGTGT
TCTAGAGAAAGCTGGTCAAATTGATGGTATTACCATGCCCAAAGGTACAC
AATTGGTGATTGATGCTTTTTCATTGCATACAAATCCAGAGTACTGGGAT
GAGCCAATGAAATTCAATCCTGAGCGGTTTTCAGAGGAGAAATATGTAAA
GCGTAATCCATATTGTTATGTACCATTCTCAGCCGGTCCAAGAAATTGTA
TTGGGCAGAAATTTGCAATGTTGGAAGAGAAAGTTTTGTTGTATcatgtt
ttgttaaattttgaagTAGTTGCCATGCAAAAAGAGGAAGATGTAGCtgc
ttgttttgaaatcattcaTAAATCAGAAAACGGATTGATGGTTAAGTTGA
AACACAGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072830-exon-scaffold_86-1491911889:163540..165622 | TCONS_00072830-exon-scaffold_86-1491911889:163540..165622 | Clytia hemisphaerica | exon |
| TCONS_00072830-exon-scaffold_86-1510915933:163540..165622 | TCONS_00072830-exon-scaffold_86-1510915933:163540..165622 | Clytia hemisphaerica | exon |
| TCONS_00072830-exon-scaffold_86-1575043694:163540..165622 | TCONS_00072830-exon-scaffold_86-1575043694:163540..165622 | Clytia hemisphaerica | exon |
| TCONS_00072830-exon-scaffold_86-1491911889:165797..165991 | TCONS_00072830-exon-scaffold_86-1491911889:165797..165991 | Clytia hemisphaerica | exon |
| TCONS_00072830-exon-scaffold_86-1510915933:165797..165991 | TCONS_00072830-exon-scaffold_86-1510915933:165797..165991 | Clytia hemisphaerica | exon |
| TCONS_00072830-exon-scaffold_86-1575043694:165797..165991 | TCONS_00072830-exon-scaffold_86-1575043694:165797..165991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:163540..165991 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00072830 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 362.073 bits (928), Expect = 3.116e-115 Identity = 200/474 (42.19%), Postives = 289/474 (60.97%), Query Frame = 3
Query: 579 IKIAPQHYPIVGSCFHIETEAPKFFKQLRDWVPINGY--LFVIWLFWYPFVWIGKVEVAEAVLKSQDIITKSLVYDFLHPWFGTGLLTSTHQKWKVRRRAITPSFHFNILNEFQKIFITQAEVLAEKFRILADSGESFDVQIPVGLAALDIICETAMGVTINAQSDADSEYVNAINAGNKLLQERQKYPWLWPDFIYWKTGSGKFFREKLNILQGFTTNVINDKVKE-----------RGSDQAAEKKAKAFMDMLLDLY--EKNEIDIEGVREEVDTFMFEGHDTTAAGLSWTLFMLGLYPEIQQKLHNEIDKV---ADQEGDLVEKIKSIKYLEYVIKEGLRLHPPVMVYARVLEKAGQIDGITMPKGTQLVIDAFSLHTNPEYWDEPMKFNPERFSEEKYVKRNPYCYVPFSAGPRNCIGQKFAMLEEKVLLYHVLLNFEVVAMQKEEDVAACFEIIHKSENGLMVKLKHR 1946
I + YP+VG ++ + +FF+Q+ ++ + L +W+ P V + E E +L S I KS +Y FL PW G GLLTST KW+ RR+ +TP+FHF IL +F I QA +L +K + E+F+ + L ALDIICETAMG I AQS+ DSEYV A+ ++++ R K PWLW D Y G ++ L IL FT +VI ++ E RGS + K+ +AF+D+LL + E N + E +REEVDTFMFEGHDTTAA ++W+L++LG PE+Q+K+ +E+D V +D+ VE +K ++YLE VIKE LRL P V ++AR + + ++ G + KGT+ VI ++LH +P Y+ P +F PERF E R+PY YVPFSAGPRNCIGQKFA++EEK +L +L +F + + QK E++ ++I + NG+ +KLK R
Sbjct: 50 IPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHINQ-EAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKR-RAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPAT-VEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRR 520
The following BLAST results are available for this feature:
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