|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072828 ID=TCONS_00072828|Name=TCONS_00072828|organism=Clytia hemisphaerica|type=transcript|length=619bp
TCTTCCAATCCATACTTGTTCTTGCCCAATTCTAACAAATCAAAACCAAA
TCAGCACCCAAAGACATCTTGCTGCTTGGTTGAAAGCCTGAATTGAAACA
GGTGCTGAGGCTttgattgaagatgaaaatacaaagaagaGATGGAAGTT
TATTTGGTCCATTAGCACCGTCTTGACCGTCTtggattcaaaagtataat
gGTAGTCACAAATATCAATCAAAATTATTGGACTGAACAATTACCTTTTC
GTTTTTTGGCAACAGCTGTCACGCAAGCTTCGTAGTATTTCTTGTGATGT
GGATACCAGAAAAAACCACGTCGACCAACTTTTATCCCTGACATTGGGAT
ACTTTGACCCTTTTCGTCCAGGGGCTTGAATTTGTTGTACGGAAGAGTCA
ACGTAAGATGGTTGCCATCAGCCTCTGGCTCTGTAAAAATGATGGTTACG
AGTGGCCCATCGTCAGAACCTGAAAAGAGTAAAATTATCGAGTGAGGTTT
TTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCAGCCTCTGG
CTCTGTAAAAATGATGGTTACGAGTGGCCCATCGTCAGAACCTGAAAAGA
GTAAAATTATCGAGTGAGG Run BLAST on NCBI transcript from alignment at scaffold_86:97769..104228+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072828 ID=TCONS_00072828|Name=TCONS_00072828|organism=Clytia hemisphaerica|type=transcript|length=6460bp|location=Sequence derived from alignment at scaffold_86:97769..104228+ (Clytia hemisphaerica)
TCTTCCAATCCATACTTGTTCTTGCCCAATTCTAACAAATCAAAACCAAA
TCAGGTTAGTTATAAACTTCTTCATTTCTATTTGTACTGTTTGCGAGAGC
AAGGAAAAATCGTATTTGCTGTATGTTTCTCAAAACTCATAAAGTGTACA
CTTCAAAAACTTTCATATTAATAAAGGTGGATAAATTAATTAGAAAAACA
GCTTTATAAAGTGTACGTAGATTATCCCTTTCCCCCCATGCATGCCTGTA
TGCTTTACCAAGCATCCTCTCTCAGAGGTTAGAACTTTCtggtacttttt
gaatggtgtCTCCGCAAATATAGGTTCTTGactgaatatttttaaatttt
tccacCTCCGACGGAaatcaaattttgccaaatttaattttttccctGAA
GGTATCAAGAAAGTTAACCTTTAAggggaactttttttggtgagaactaa
ttttaacaaaagaccaattctaatttttttcttttggcgataacttattt
tggcaaaccatgaattttttgattttggcaagaacttaatttggcaaatg
acctaaaaaattattttagtgggaactaaatttggcaaatttcgaGTTCA
CTCtccaattttgtcaaaataaatatggtataaAAGATGAAGAAGTCTTA
TTCTACTTACCTAAAAGATCGgcaacaatttttttgttcaatgCTGGCTT
TGATTTTCTAGTCTTTTTGTTTTCCTTGCCTTGTGCTGACGACCTTAAAG
TTTTAAGTGGAACATTTAGCACTTTCTTTGCCCTACTAATTACTCCTAAA
TGCTTGATGTTCATGATGTgatgtttttatcttttgatttcaaaacattt
ggctGAATTTACAAAACGGCACTCGAAatcaatgggccattccagaattt
gtctgtaaccaGGGGACGGACAACACAGGATTTTAGAGGGTAAAAAAGTC
TTATATCAGACTGTGCTTGTAactaataaaattcaaaatttccaaggcca
ttgaattaaaaaatgtggAATTTCAGATGCTTTTTACAAAAGTATataca
tggatttttatcagaATTCTCGAACCAccacttgaaaataaaaattattt
ccgaagctagaaaaaattaaaaaatgcgtATTGTCTGACGccgggtaaca
aaaattttctggaatggcccaatgtgaTGGAAAACAAGAATAAATGTTTC
CTTGTTTGACTTGTAACAGAGTTAAACTGGAAGagtctattttttataag
aaagaaattGTTTTCTTACTTCCTCAAAGTTTTCTCGTCGAAGTATTTCT
TGACGATGGTATTGAAAACCGGTGTCCATTTTTGGTATTTATCGCTCTTC
CTTTTCAACACCTTTATTTCTGCCACCGTCAACTTAACATGGTTCGTCAT
TGGGAGTATCATTTCTTGCTAAAGGTTTGTAAAGTTATGAAANTCCATTT
TTGGTATTTATCGCTCTTCCTTTTCAACACCTTTATTTCTGCCACCGTCA
ACTTAACATGGTTCGTCATTGGGAGTATCATTTCTTGCTAAAAGTTTGTA
AAGTTATGAAAATAAATCTGTAGTTAGACTGAGCAGGACTGAGTGCTTGG
TTCCGGTAAGTGTTTGAGataccttaaggggattaatttttgcgggaact
tattttcgcgagacataaaaattaacatttcaCTAATCAGCCCCTTTTTG
AccgaatttctttcattttcctaggggttcaGGCTAAAATCATGATCTTA
AATTTTTCGCAAGGATTATATTTTGCGAATTTCGCAAATCcaaaggtttt
aaaaatttccGCAGTTATTAATCAAGGTACTTAAGGAGGATCTAATATTT
TCATGAGAAATAAACTTTTACTGGTACCTACCTGCATATCTGAATTGCTA
AGATAACCGGTCCTGACGTCTaatgtttttttatgttttctgtCTGTTGT
TATTGGACTACTCTCAAAGGTCATAGCTCTGTCCGTCATTGCAGGAGTTG
AGTTCATCTATATAGAAAGTAACAAAGTTTTCAGTTTCTTATACACATTC
AAGTAATTTTTTCTTGCTGCTGGTGCTGTTTTGAAAACAGATGTATGTTG
GGTTAAAACTCTAATTATCCACCAATTTGATCCTAAGTTTACTTTAAACT
CAACCATTACAGGCTCCACTTACTTTAAGAATCTTTCAGCCTCATTGTTT
tcgtaaaaaagtttattttagatattctcACTTTATGAAAATTTCTCTCC
TAAATTTATCACTTAACCAACTTTAATAGATACACTACTCACTTGGTCTG
TTCCAGGAAGCACTTCCTCATGCTGGTCAAGGGTCATACTCTCAGGAATA
ATCTATGAGAAAAGGATATTCTTATTCTTACAAGTCCTTATAAAACTTGC
TTTCATTAAAGCTTTTTTCTTGACAGGGTATAAGCTGAATTTACTAATTC
AataatagtgttttttttttaatttacaagtGCATTTTGATTGAGTTATT
AATAACATGTGAGTATATAGTGGCAAATTCAACTTACTGTGGTTTTTTTG
CCATTTGGGAAGGAATGGCTGATTTGTTGCGTGACTGTCACTAAATCAGG
AACTAGCCTGCCCAAATTACTGAAAGTTGACTCTAAGAGAAAAGAGGTTA
TGGTGAACAAGGCTGGGCGTTGTGTGGATGTATGTAGGGTCTTTAAAGAG
TAACATGGTCACAGATTTCCTCATGTCCTATTCATTCACaggctacatgt
ttttttctataTAAATGTTATGTTATGAGCATAcacaggctcagtttttg
gtttCCACACAATTTTGTTATAGAGCagaattggaaaatttataATCTCA
CCGTATTCTTTAAGCTTTTCGTTTGCTAATTGAAGCTGTCTTTGCATCTT
TCTGCAATTTGTACACGAGCCACCTAAGAGAGGTTTCTGCGTTACTCACT
GATTCTAACATTGTAATGAAATAAATGAAGACAACAACTTAATCGACTGA
ACACTTATTTATTATGATACTAAATTAACTCAAAAGTCTCACACAGCCTC
AATTACAAATATTTCACCTTCTTTATTTCCAGCACCCAAAGACATCTTGC
TGCTTGGTTGAAAGCCTGAATTGAAACAGGTAGGACAATTTTTATTACTA
TGgtttttttgcttttatgtTCAGGGACctaatttttaaaatgcagacTT
GGCtttagagaaaaaagaaaaaatgctaGATATTTTCTGTTGGCAATATG
CAACAATTGTATTGCTTTCTCGTACTAATTTGCATGAAGCGAACAAAACC
cttagaaaaaatttttaagctTTTGAAATCATACGGGTAGGTTAGGAAtt
aattcaaattaaaatatAGCTAACGTTTTTGCTGGTCGAATACTGGACTT
TTTGCTGAAAGAAAAAAGTAGATTAATTCAATTTTGATTCAAAGTACAAA
TTGACTAGGCACCATTTTAATACACTAGCACTATCATAAAAAACATCAGC
TATTAAGTTTAACCTAATTGAATGGAGTTTTGGAACTAGGTTAGAGATCA
CCATTACTTTTCAAAGGTTTCTCTTGAAAACTTATCTCtaaatttgtaac
ttttaatcAGCAATGTATGTGAAAAGCAGACTCACTTGACTTATCCAATG
TTGGTAAGGTTTCTAAATTGTCCTCCTTTGTAGGCAAGTTCGTCAGATTT
TGCTGAATTCTGTTCTTGTCTTGCTTTACTTTTTGACCTAAAAGTAATAG
CGGTATGGTTTGGTTGGGGCCCTGTTATACGCAACATTCTGGTTTCTAGC
GAAACTCTAAATTTTATATCTCTTGCtcgatttttaaaacatttttcgtt
TATTGCAATTTACTTACTGGGCTTTTTCATCAATGTGGTGtaagatttta
aaccctcttTTTCTAAATACGAGGTGCCCATTGCCTCTACCATGTTGTTG
CTACATTCTTCGTGAATCGATGATTGCCCTAAAATCAGATACAAGGTATA
TGCATTAGCTAACAGGTGAGGGTAGAAATAGCCTACATCCACAAGTTTTG
GTCAATAACTTTCAGCATTTGTTGGGGGTAACAAAAACCAATTGAACATT
ATTTCAATACAGTTGAGTTCAGTTTCTTTGTACTTAAATTATACTCACAT
GGTTTGCTTGTTAATGTGCCTTTGGTTTTTTCGATGTTTGATACCTCATT
AATCTTGTCCTTCAGTGTAACCatctcaaaatcttaaaatttaaaaattc
tgaGTAACTGTTTatgtttattttaaaataaaatgtagaGAAAACTTAGT
TCATAATTTTTGCTGTTCTGTCAAGGTTGAATCCAAAGTCAAGGAAGATC
TTTCTAAAAAAACTGCTTATGTTTAATGAAGGTTTCGCCATCATTTAATC
ATTCTAAGTTTCCTGGTGGTGCCTTACCTACAGGGGTATCTTTTGCTGTG
TCAGCGCTTTTTAGCTCATTGCCTTTAGATCCCATTAATtctaaaaacaa
tttaaagGTAAACAATATGTAAAAATTGCAACTGCAACTTCTTTTATCTT
ATGCCCATTTTTTAcgaataatattttgaaaaaaaaaatcaccaaaacca
CAATATTATATATCCTGGAAGTTTTGcattgaaatttttaatttaattgg
TAGGGTAACAGCAACATGGTTGCTGATAAATAATTACGGTTTATGCCTTT
AACTCAAAGAGAAATGTCTTACCGTCAAAGTTTTGGACCCAGTTGTCAAG
GATATTCTCGTTAAGCTCAAAAGATTTGTCTAAGATTCAAATAGAAAGTA
AAGTATTGTTCAAAATTTCTGAACTGATTATCTTAAATTTTCTTTAGCTT
TAAGATTGAATTTTTAAGCTGTAGCCATGACAAGAACTAAACTGCATAGA
TAAACCCAAGATATTTTGAAACTTCACTGTTTTAACACATTCTGCTTACC
GCCACTTTTGTTGATGATAATAGACGAGAGTATTTCATCTGTCTTTTTGA
TTGCCTTTTTTGCTGCCTTGTCTGCTTTCACTAAAAAATGGCATAAATAG
GGTAGAGAgactttgaatttttcaattggggtttgaaattattttggatC
AGAGACTCTATAAGATTTAGGACTGCATGCACAGGTTTCTTAATTTGATT
CTTCAATATATTACTAAGTAAACTTTTGTGTGGTATACCTATTTCAGGAT
CTtgctttttactctttttgaCTTCCATTTTCGTGTCAGTCTTCATTACT
AGGAATTCAAAGTGATATTCTTGCTTACTTGGCTGTTTCGATTTGAAAGC
GCTTTTACTAGTTTAAAAGCTGAAAAGTTCTAAtttagaaattaaagaaa
tatgACTTTTTAAACTCGTTACAAACAAGCAAaacttaattccaatttta
AGCAAGATGTGTTTNGACTTTTTAAACTCGTTACAAACAAGCAAAACTTG
ATTCAAATTTAAAGCAAGATGTGTTTTTCGGTGTCATTCTAGGCATTACC
TTCTTCTGTAGAGGCtcttttcttctttgtttttttcgtcTTTGGTTGTG
TAAGTACGTTTTCTtgagttgaaaaagaaaaagatggtTGAAAATATGTA
GAATTACATGGTATTTGTGCATTGCTCCTTAGCAAAGATTGAGATTTTAA
TTTGAAAGGTTAAGCTAGTGCCAAAGAGCTACAAACAATAAAAAGTTCTA
AGATGATAGAATCAATACCTTTATCGATTCCATCTAAGGTACAATCTTCT
TTTTGTTCCGCCTGGCACTCCCTGGCCCCTgaaagatgaaatatttttca
ttcttcAGTCTAGTCTTTCTCAATAGACCCTCTAGATTGAAAATCTTACC
AAAGGTAAATACCACCTGGGCGTAAAGTTAAGTCCTTATGCAATTAAGAT
GTCACTTTTAATTAATCGAATAACGAATTTATCTCTTGACAGGTGCTGAG
GCTttgattgaagatgaaaatacaaagaagaGATGGAAGTTTATTTGGTC
CATTAGCACCGTCTTGACCGTCTtggattcaaaagtataatgGTAGTCAC
AAATATCAATCAAAATTATTGGACTGAACAATTACCTTTTCGTTTTTTGG
CAACAGCTGTCACGCAAGCTTCGTAGTATTTCTTGTGATGTGGATACCAG
AAAAAACCACGTCGACCAACTTTTATCCCTGACATTGGGATACTTTGACC
CTTTTCGTCCAGGGGCTTGAATTTGTTGTACGGAAGAGTCAACGTAAGAT
GGTTGCCATCAGCCTCTGGCTCTGTAAAAATGATGGTTACGAGTGGCCCA
TCGTCAGAACCTGAAAAGAGTAAAATTATCGAGTGAGGTTTTTATAAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCAGCCTCTGGCTCTGTAAA
AATGATGGTTACGAGTGGCCCATCGTCAGAACCTGAAAAGAGTAAAATTA
TCGAGTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072828-exon-scaffold_86-1491911889:97769..97822 | TCONS_00072828-exon-scaffold_86-1491911889:97769..97822 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1510915933:97769..97822 | TCONS_00072828-exon-scaffold_86-1510915933:97769..97822 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1575043694:97769..97822 | TCONS_00072828-exon-scaffold_86-1575043694:97769..97822 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1491911889:100851..100897 | TCONS_00072828-exon-scaffold_86-1491911889:100851..100897 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1510915933:100851..100897 | TCONS_00072828-exon-scaffold_86-1510915933:100851..100897 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1575043694:100851..100897 | TCONS_00072828-exon-scaffold_86-1575043694:100851..100897 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1491911889:103711..104228 | TCONS_00072828-exon-scaffold_86-1491911889:103711..104228 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1510915933:103711..104228 | TCONS_00072828-exon-scaffold_86-1510915933:103711..104228 | Clytia hemisphaerica | exon |
| TCONS_00072828-exon-scaffold_86-1575043694:103711..104228 | TCONS_00072828-exon-scaffold_86-1575043694:103711..104228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:97769..104228 + |
Blast
The following BLAST results are available for this feature:
|
