TCONS_00072825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072825
Unique NameTCONS_00072825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072825 ID=TCONS_00072825|Name=TCONS_00072825|organism=Clytia hemisphaerica|type=transcript|length=784bp
agaaaatgtctCCAAAGACGTCTACTAGAATAGACACACCTTCTGAAGAA
CCGGTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGtTTTCTCCTGT
TGAAGATTCACAACAATGTTCGCAGCAAATTGAAAATTCACAGCAAACTG
AAGAGTCGCCGTTCAAACTACCTTGGGATACACCTGTTAAGATCAAAAAC
AAGGAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACATATTGGTCC
CTTAGAAACAGATACAGATCGTAGACTTGTAGAAATTGAAGACTCAGAAG
ATTTCACTGAGGAGTTTTCAGTTGCGGactTTGATGCAGTTGAATTCATG
AATATTGCAAAAACTTATTGCGGCGTTCAAGAATTTTCTACAAGAAATGA
TTTGCTTAAGTATTCTCTCAAGGCTGGTATGTTGGGTGGTATTGGTGGCC
AGGCGACAATGGACCAAGGAATAGAAACGTTTGGGAGATGGCTGTTTGTC
AACAAAAAGGTCATGGTATTGCATAAACCAGTCGAAAACGCACTGGATAT
GGTCAAAATTGTGCCAAAATCGAAATaattgaaaatagaaatgtagATTT
GATCATTAGATACATCGCTGTTTCTATTTTCCATCTTTCAATTAGTTTTC
GTTTTTAGTataacttttaccaaaaaaatttatAGTTTATGAACCGTGCA
AGCTGTCTGGACAAATCGAGTAAGTTATACGTACTGATGTAAAACAAACG
TTGTGTCGACCAGGTTTCACACACTTTAAAACTC
Run BLAST on NCBI

protein sequence of TCONS_00072825-protein

>TCONS_00072825-protein ID=TCONS_00072825-protein|Name=TCONS_00072825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
KMSPKTSTRIDTPSEEPVRENPFTRSLGLFSPVEDSQQCSQQIENSQQTE
ESPFKLPWDTPVKIKNKEDAKEKINESGIHIGPLETDTDRRLVEIEDSED
FTEEFSVADFDAVEFMNIAKTYCGVQEFSTRNDLLKYSLKAGMLGGIGGQ
ATMDQGIETFGRWLFVNKKVMVLHKPVENALDMVKIVPKSK
Run BLAST on NCBI

transcript from alignment at scaffold_86:80834..84102+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072825 ID=TCONS_00072825|Name=TCONS_00072825|organism=Clytia hemisphaerica|type=transcript|length=3269bp|location=Sequence derived from alignment at scaffold_86:80834..84102+ (Clytia hemisphaerica)
agaaaatgtctCCAAAGACGTCTACTAGAATAGACACACCTTCTGAAGAA
CCGGTAAGATTATACAGTGTTAGGTCCTTTTCTTATCCTTGTGACTGCCA
TTTTTGTTCAGTTGATTTCTGAAGTAAATGGTACACTAAATCAACAGGCG
TAACAGAAAATTTTGTTGTCATGATTGGTTGACACTAACCAGCCCACTAC
ATTTTCCATTTGTTGCGTTGATTATATCAACTTATCTAACCTTGTTATCT
TGATAAAAATAAAGCTTTTCATCCTTCTTTATAACAGGAACTTTTATCTT
ACAGGTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGGTAAGTTTCA
TTTCCCtcttcttttatatttttggttTCAATGAAAAGTTATTGAATTTT
GCTGCTACAGGATAGCACAGTAGCAAGCATTGATGCTCTTTGCTTTTAAT
CAGTNATTCACACGGTCGCTAGGGCTGGTAAGTTTCATTTCCCtcttctt
ttatatttttggttTCAATGAAAAGTTATTGAATTTTGCTGCTACAGGAT
AGCACAGTAGCAAGCATTGATGCTCTTTGCTTTTAATCAGTCTTTGATTT
GCATTACAAAAAAACTAATTACAATTATTATCCCTAATTCAaacgtttgt
ttttgtttatagtTTTCTCCTGTTGAAGATTCACAACAATGTTCGCAGCA
AATTGAAAATTCACAGCAAACTGAAGAGTCGCCGTTCAAACTACCTTGGG
ATACACCTGTTAAGGTAAGAATGTGTTTGCATTTTGTTTAagccttttaa
ttttttttcattcgaTTATATAACACAAGAAATGcttctttcagaaaaat
tgtCTGTGAAATTAGGTGAGAATCAATAGTTGACCTCCCGTTGCCATTGT
GAATCAATTTAGAGGAATTTTGACATGAAGTGAAAACATCCAGGAACATC
CCTGAAGATAATTTTAGTGCTGTGGTtttaaaagggttttttttctgttg
tttttggTCATTTCAGTGTCAATTCTTAAATCATCATTTGCTTTCATCTA
CTGTACCATTCAAAGAAATTCCTTTTGTGTAAAATAACACTTGTGCTTAT
TTCAAGCTTTTTCTTCATATGTTATAACATGCTCTACTTTAATACTCAGA
TCAAAAACAAGGAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACAT
ATTGGTCCCTTAGAAACAGATACAGGTATATACAGGTGAAATTTTGACTA
CATCAGCAAGCATCCATGAtataatatttgagacaaaattAGTCATGCTG
AAAATTTATTTGcttcattaaaaattttaaaccgaTTGTGCAATAATACA
ACATACTGTAttgtggtgttttttttttgagactctttgactttttggag
catgttttttgtaaaatgaactgatttaaaataaaatttctttcctcTTA
CTTTCAGATCGTAGACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGA
GGAGTTTTCAGTTGCGGGTAAGAAGTTGGAAATTGTCTTATAACATTCAG
ATTTTTTTCGTACTTAACTTTCCTATATCAGAAGGTATAAACACTTGCAC
TTTGGCCATTTTAGACCAACAAGCAAAGTGTATTTTTAGAtagaagaaaa
atattaatCTGAACGTACATGTTTGGAAGAAGTAGAGTATGAACCTCCAA
TTCtagtttacatttttcaaacggTAGAACAATTATTTGTACATTTAAAG
ATATCGGAAATGAAGTTGAATTTACTGTGCCAAAActtgctttttgaaaa
gctacatgtttttttttataagcaagtgtatgccccttggttaggctcgt
gtatgcttaagttctcaaagcatccaggcatagtttatggttattatatg
cttaagaattaagcttatgattcaccccgagccaagttttttagtgaaat
ttcagatattttgtaaaaaatttgatcagattttgggagcagtggaacgt
agctagccgtggaatgtcttattttttacttgacctctaccaaaccagaa
aaaaatttaataaaaacagataaaaatgaccacttgaaaaatattttagg
ctgacatatatgctcatgttatgcttaggaattctgcaaatctgagcctt
NCATTTTATTGTCAATTCTTAAAAAGAATCATCATTTGCTTTCATCTACT
GTACCATTCAAAGAAATTCCTTTTGTGTAAAATAACACTTGTGCTTATTT
CAAGCTTTTTTCTTCATATGTTATAACATGTTCTACTTTAATACTCAGAT
AAAAAACAAGGAAGATGCTAAAGAGAAGATAAATGAATCAGGCATACATA
TTGGTCCCTTAGAAACAGATACAGGTATAAACTGAAATTTTGACTACATC
AGCAAGCATATATGATATAATATTTTAGACAAAATTAGTCATGCTGAAAA
TTTATTTGCTTCATTAAAGATTTTAAACCGATTGTGCAATAATACAACAT
ACTGCAttgtggtgtttttttttttagactctttgactttttggagcatg
ttcttgtaaaatgaactgatttaaaataaaatttctttcctcTTACTTTC
AGATCGTAGACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAGT
TTTCAGTTGCGGGTAAGAAGTTGGAAATTGTCTTATAACATTCAGATTTT
TTTCGTACTTAANTTTCAAACATCACCTTATAATATGGATATCAGTGTGT
AGATTAAAAAACTTACCACAAGAAATTAGTAGATTTTTAatgtgtttctt
tttttctttcagactTTGATGCAGTTGAATTCATGAATATTGCAAAAACT
TATTGCGGCGTTCAAGAATTTTCTACAAGAAATGATTTGCTTAAGTATTC
TCTCAAGGCTGGTATGTTGGGTGGTATTGGTGGCCAGGCGACAATGGACC
AAGGAATAGAAACGTTTGGGAGATGGCTGTTTGTCAACAAAAAGGTCATG
GTATTGCATAAACCAGTCGAAAACGCACTGGATATGGTCAAAATTGTGCC
AAAATCGAAATaattgaaaatagaaatgtagATTTGATCATTAGATACAT
CGCTGTTTCTATTTTCCATCTTTCAATTAGTTTTCGTTTTTAGTataact
tttaccaaaaaaatttatAGTTTATGAACCGTGCAAGCTGTCTGGACAAA
TCGAGTAAGTTATACGTACTGATGTAAAACAAACGTTGTGTCGACCAGGT
TTCACACACTTTAAAACTC

Coding sequence (CDS) from alignment at scaffold_86:80834..84102+

>TCONS_00072825 ID=TCONS_00072825|Name=TCONS_00072825|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_86:80834..84102+ (Clytia hemisphaerica)
aaaatgtctCCAAAGACGTCTACTAGAATAGACACACCTTCTGAAGAACC
GGTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGtTTTCTCCTGTTG
AAGATTCACAACAATGTTCGCAGCAAATTGAAAATTCACAGCAAACTGAA
GAGTCGCCGTTCAAACTACCTTGGGATACACCTGTTAAGATCAAAAACAA
GGAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACATATTGGTCCCT
TAGAAACAGATACAGATCGTAGACTTGTAGAAATTGAAGACTCAGAAGAT
TTCACTGAGGAGTTTTCAGTTGCGGactTTGATGCAGTTGAATTCATGAA
TATTGCAAAAACTTATTGCGGCGTTCAAGAATTTTCTACAAGAAATGATT
TGCTTAAGTATTCTCTCAAGGCTGGTATGTTGGGTGGTATTGGTGGCCAG
GCGACAATGGACCAAGGAATAGAAACGTTTGGGAGATGGCTGTTTGTCAA
CAAAAAGGTCATGGTATTGCATAAACCAGTCGAAAACGCACTGGATATGG
TCAAAATTGTGCCAAAATCGAAATaaaaaatgtctCCAAAGACGTCTACT
AGAATAGACACACCTTCTGAAGAACCGGTCAGAGAAAACCCATTCACACG
GTCACTAGGGCTGtTTTCTCCTGTTGAAGATTCACAACAATGTTCGCAGC
AAATTGAAAATTCACAGCAAACTGAAGAGTCGCCGTTCAAACTACCTTGG
GATACACCTGTTAAGATCAAAAACAAGGAAGATGCTAAAGAGAAAATAAA
TGAATCAGGCATACATATTGGTCCCTTAGAAACAGATACAGATCGTAGAC
TTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAGTTTTCAGTTGCG
GactTTGATGCAGTTGAATTCATGAATATTGCAAAAACTTATTGCGGCGT
TCAAGAATTTTCTACAAGAAATGATTTGCTTAAGTATTCTCTCAAGGCTG
GTATGTTGGGTGGTATTGGTGGCCAGGCGACAATGGACCAAGGAATAGAA
ACGTTTGGGAGATGGCTGTTTGTCAACAAAAAGGTCATGGTATTGCATAA
ACCAGTCGAAAACGCACTGGATATGGTCAAAATTGTGCCAAAATCGAAAT
aaaaaatgtctCCAAAGACGTCTACTAGAATAGACACACCTTCTGAAGAA
CCGGTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGtTTTCTCCTGT
TGAAGATTCACAACAATGTTCGCAGCAAATTGAAAATTCACAGCAAACTG
AAGAGTCGCCGTTCAAACTACCTTGGGATACACCTGTTAAGATCAAAAAC
AAGGAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACATATTGGTCC
CTTAGAAACAGATACAGATCGTAGACTTGTAGAAATTGAAGACTCAGAAG
ATTTCACTGAGGAGTTTTCAGTTGCGGactTTGATGCAGTTGAATTCATG
AATATTGCAAAAACTTATTGCGGCGTTCAAGAATTTTCTACAAGAAATGA
TTTGCTTAAGTATTCTCTCAAGGCTGGTATGTTGGGTGGTATTGGTGGCC
AGGCGACAATGGACCAAGGAATAGAAACGTTTGGGAGATGGCTGTTTGTC
AACAAAAAGGTCATGGTATTGCATAAACCAGTCGAAAACGCACTGGATAT
GGTCAAAATTGTGCCAAAATCGAAATaaaaaatgtctCCAAAGACGTCTA
CTAGAATAGACACACCTTCTGAAGAACCGGTCAGAGAAAACCCATTCACA
CGGTCACTAGGGCTGtTTTCTCCTGTTGAAGATTCACAACAATGTTCGCA
GCAAATTGAAAATTCACAGCAAACTGAAGAGTCGCCGTTCAAACTACCTT
GGGATACACCTGTTAAGATCAAAAACAAGGAAGATGCTAAAGAGAAAATA
AATGAATCAGGCATACATATTGGTCCCTTAGAAACAGATACAGATCGTAG
ACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAGTTTTCAGTTG
CGGactTTGATGCAGTTGAATTCATGAATATTGCAAAAACTTATTGCGGC
GTTCAAGAATTTTCTACAAGAAATGATTTGCTTAAGTATTCTCTCAAGGC
TGGTATGTTGGGTGGTATTGGTGGCCAGGCGACAATGGACCAAGGAATAG
AAACGTTTGGGAGATGGCTGTTTGTCAACAAAAAGGTCATGGTATTGCAT
AAACCAGTCGAAAACGCACTGGATATGGTCAAAATTGTGCCAAAATCGAA
ATaaaaaatgtctCCAAAGACGTCTACTAGAATAGACACACCTTCTGAAG
AACCGGTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGtTTTCTCCT
GTTGAAGATTCACAACAATGTTCGCAGCAAATTGAAAATTCACAGCAAAC
TGAAGAGTCGCCGTTCAAACTACCTTGGGATACACCTGTTAAGATCAAAA
ACAAGGAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACATATTGGT
CCCTTAGAAACAGATACAGATCGTAGACTTGTAGAAATTGAAGACTCAGA
AGATTTCACTGAGGAGTTTTCAGTTGCGGactTTGATGCAGTTGAATTCA
TGAATATTGCAAAAACTTATTGCGGCGTTCAAGAATTTTCTACAAGAAAT
GATTTGCTTAAGTATTCTCTCAAGGCTGGTATGTTGGGTGGTATTGGTGG
CCAGGCGACAATGGACCAAGGAATAGAAACGTTTGGGAGATGGCTGTTTG
TCAACAAAAAGGTCATGGTATTGCATAAACCAGTCGAAAACGCACTGGAT
ATGGTCAAAATTGTGCCAAAATCGAAATaaaaaatgtctCCAAAGACGTC
TACTAGAATAGACACACCTTCTGAAGAACCGGTCAGAGAAAACCCATTCA
CACGGTCACTAGGGCTGtTTTCTCCTGTTGAAGATTCACAACAATGTTCG
CAGCAAATTGAAAATTCACAGCAAACTGAAGAGTCGCCGTTCAAACTACC
TTGGGATACACCTGTTAAGATCAAAAACAAGGAAGATGCTAAAGAGAAAA
TAAATGAATCAGGCATACATATTGGTCCCTTAGAAACAGATACAGATCGT
AGACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAGTTTTCAGT
TGCGGactTTGATGCAGTTGAATTCATGAATATTGCAAAAACTTATTGCG
GCGTTCAAGAATTTTCTACAAGAAATGATTTGCTTAAGTATTCTCTCAAG
GCTGGTATGTTGGGTGGTATTGGTGGCCAGGCGACAATGGACCAAGGAAT
AGAAACGTTTGGGAGATGGCTGTTTGTCAACAAAAAGGTCATGGTATTGC
ATAAACCAGTCGAAAACGCACTGGATATGGTCAAAATTGTGCCAAAATCG
AAATaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045205XLOC_045205Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072825-proteinTCONS_00072825-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072825-exon-scaffold_86-1491911889:80834..80886TCONS_00072825-exon-scaffold_86-1491911889:80834..80886Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1510915933:80834..80886TCONS_00072825-exon-scaffold_86-1510915933:80834..80886Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1575043694:80834..80886TCONS_00072825-exon-scaffold_86-1575043694:80834..80886Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1491911889:81138..81173TCONS_00072825-exon-scaffold_86-1491911889:81138..81173Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1510915933:81138..81173TCONS_00072825-exon-scaffold_86-1510915933:81138..81173Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1575043694:81138..81173TCONS_00072825-exon-scaffold_86-1575043694:81138..81173Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1491911889:81496..81597TCONS_00072825-exon-scaffold_86-1491911889:81496..81597Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1510915933:81496..81597TCONS_00072825-exon-scaffold_86-1510915933:81496..81597Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1575043694:81496..81597TCONS_00072825-exon-scaffold_86-1575043694:81496..81597Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1491911889:81983..82058TCONS_00072825-exon-scaffold_86-1491911889:81983..82058Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1510915933:81983..82058TCONS_00072825-exon-scaffold_86-1510915933:81983..82058Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1575043694:81983..82058TCONS_00072825-exon-scaffold_86-1575043694:81983..82058Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1491911889:82291..82350TCONS_00072825-exon-scaffold_86-1491911889:82291..82350Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1510915933:82291..82350TCONS_00072825-exon-scaffold_86-1510915933:82291..82350Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1575043694:82291..82350TCONS_00072825-exon-scaffold_86-1575043694:82291..82350Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1491911889:83646..84102TCONS_00072825-exon-scaffold_86-1491911889:83646..84102Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1510915933:83646..84102TCONS_00072825-exon-scaffold_86-1510915933:83646..84102Clytia hemisphaericaexon
TCONS_00072825-exon-scaffold_86-1575043694:83646..84102TCONS_00072825-exon-scaffold_86-1575043694:83646..84102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:80834..84102 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.173779	0	0	0.666518	0	0.446283	0	0	0	0	0	0.181994	0	0.207406	0	0	0	0	0	0	0	0	0	0	0.151764	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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