|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072823 ID=TCONS_00072823|Name=TCONS_00072823|organism=Clytia hemisphaerica|type=transcript|length=639bp
NNGGACCCCTGAACTAATGAGCCTCTTCCCCTGGACTAAAAACCTACCTC
CCTCGAGCTATAGGGGTCAGCCTTGTTCGCCAATCTGACTGATCTTTTGG
TAGGAAAAAAAACCATGGGATGTTAATAATAAGTAATAAATCTGCTCGTT
CTTCATTTCAGCTGGTTGATGAATGTCATCGTCCGTCGTATTGGAAGTTT
ATcatgaataaaaaacaaagtaatCATTAGCATAAGTAGCTCAAGTTAGA
GAACGCAACCTTACGTTTGATGCGAGATGACACGAGTGATAACTTCTCCC
CTTTTATGCGCATGCTCAATAATTCGCATGCCGGAACATTCGTCCGGAAC
CGATAAGATACTAGATTTCTgactatttttcaaaacatcagaAATCCCGC
ATCTTAACTTTTCCTCCTTATCAGTTATCAAAAGGATTCAAGCAATAAAT
TGTAGACACATGTCATTTCTGGAGACATTTGGACTATCTTCGTAACGCGA
GACACAAAAAGTAACTGAATAGTGTTCAAAATAAAGAGATTGACATTAAT
CAAGGTTAGTTTCTGTCCAGTGTTTTAAATTCCTAAGCTTTTTGACACGG
AAAACCTTTTCTTTGGATTATCTTTAATGTAACGATTNN Run BLAST on NCBI transcript from alignment at scaffold_86:38291..39047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072823 ID=TCONS_00072823|Name=TCONS_00072823|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at scaffold_86:38291..39047+ (Clytia hemisphaerica)
NNGGACCCCTGAACTAATGAGCCTCTTCCCCTGGACTAAAAACCTACCTC
CCTCGAGCTATAGGGGTCAGCCTTGTTCGCCAATCTGACTGATCTTTTGG
TAGGAAAAAAAACCATGGGATGTTAATAATAAGTAATAAATCTGCTCGTT
CTTCATTTCAGCTGGTTGATGAATGTCATCGTCCGTCGTATTGGAAGTTT
ATcatgaataaaaaacaaagtaatCATTAGCATAAGTAGCTCAAGTTAGA
GAACGCAACCTTACGTTTGATGCGAGATGACACGAGTGATAACTTCTCCC
CTTTTATGCGCATGCTCAATAATTCGCATGCCGGAACATTCGTCCGGAAC
CGATAAGATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTCTCCCCTTTTATGCGCATGCTCAATAATTCGCATGCC
GGAACATTCGTCCGGAACCGATAAGATACTAGATTTCTgactatttttca
aaacatcagaAATCCCGCATCTTAACTTTTCCTCCTTATCAGTTATCAAA
AGGATTCAAGCAATAAATTGTAGACACATGTCATTTCTGGAGACATTTGG
ACTATCTTCGTAACGCGAGACACAAAAAGTAACTGAATAGTGTTCAAAAT
AAAGAGATTGACATTAATCAAGGTTAGTTTCTGTCCAGTGTTTTAAATTC
CTAAGCTTTTTGACACGGAAAACCTTTTCTTTGGATTATCTTTAATGTAA
CGATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072823-exon-scaffold_86-1491911889:38291..38627 | TCONS_00072823-exon-scaffold_86-1491911889:38291..38627 | Clytia hemisphaerica | exon |
| TCONS_00072823-exon-scaffold_86-1510915933:38291..38627 | TCONS_00072823-exon-scaffold_86-1510915933:38291..38627 | Clytia hemisphaerica | exon |
| TCONS_00072823-exon-scaffold_86-1575043694:38291..38627 | TCONS_00072823-exon-scaffold_86-1575043694:38291..38627 | Clytia hemisphaerica | exon |
| TCONS_00072823-exon-scaffold_86-1491911889:38746..39047 | TCONS_00072823-exon-scaffold_86-1491911889:38746..39047 | Clytia hemisphaerica | exon |
| TCONS_00072823-exon-scaffold_86-1510915933:38746..39047 | TCONS_00072823-exon-scaffold_86-1510915933:38746..39047 | Clytia hemisphaerica | exon |
| TCONS_00072823-exon-scaffold_86-1575043694:38746..39047 | TCONS_00072823-exon-scaffold_86-1575043694:38746..39047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:38291..39047 + |
Blast
The following BLAST results are available for this feature:
|
