TCONS_00072821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072821
Unique NameTCONS_00072821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072821 ID=TCONS_00072821|Name=TCONS_00072821|organism=Clytia hemisphaerica|type=transcript|length=1504bp
GTTCAGGATCACAAGTTTCAGACTGGACATCAACATCCATTGAAGAAGAA
GGTTGTTGATCTTCTATATGTGATGAGCCAGCTTGTGAGTGGTCCATTGG
TTCTTCTCGTTGTTGATTGTCTAGATTTTGCTTAATCTGCTTCACCCTCT
GATAGGTAatcttgtttttcatttttttaatacgccgatTAGTTTCAACG
AGGTCGTCTTTTTCGGCTGGCATAACATAAGGTACATCATATTGTGCACA
TTTCTGTAATAGATTTTGGTGAAGCTTTGTCTGTTTCTGTGGTTGACTTT
GTCTAACAtactttgtttcttttttaagcTTTCGTTTTTGGTATTTGATC
TTGTTTTGCATTTTCATAATACGCTGGTTAGTTTCGTTGAGGGATTCATT
TTCAGCTGGCATGACATACGGAACATTATATTCTTGACATTGCTGTAATA
GAGCCTTTGCCTGCTTCTCTTTTTTCAGGTGTTGCCTATTACAGTTGATT
TCGATCCTCGTTTTGTTAATACGAAGTTTGAATTGTTCCTCCGTTTCAGT
TTCATACAGTAGAGAGTTGTGTTGCCGTTCATCTTCCACCAATTCTGATT
TACGTGAAAAAGATTGTTGATGTTTGTCTTTGGAATGCTGTTCAACACTA
CATTCAGAAATAACAAAGTCGACATGATTGGAAAATGAGGTGGGCAGACG
GAGGGAATTGTGTGTATCATATGATAAAACTGTTTCATTTGTTGGTATCA
AGGATTGAAAGTGATCATTATTAGATGAAGCCAAGTACATTACAATACCA
GAGGTTGCATTTGGATTTAGATCGAAGTAAGGTTGTTCACGTGTGCTTGT
ATCGGTTGATACAAAGATGTGTACATTTAGAAAGTATGCAGTTGCAACAC
AAACAATCATTTCTGTGTAAACTGCATCTTTTTCTTGTTCTGATAAATAC
AATTCAAATCGATCACCACCCAAGTTGTTGCTCTGGAATCGATCATCTAC
AACAATATTGTGCAAACCAAAATCTTGTAAAACCAGGTTAAAATCATCAT
GTTCGTTGGTATTCCTGATGTAATTGACAACTGCTTTTCTCAAATCTCCT
ATATCCACAAACCTAAAGTTTACAGGAAGTTGGCCATTAATTGTAGATCG
ATGAATTTGCTCAACAATAGAATGATAGAAACAGTTGCCATCTCCTGGTG
TTGGTTGATACAATGACATATCCAATCCAACGAAACGAGCATTGGCTACC
ATAATAGTTGCTCTTTGGGCAATAGCTTCTTCAGGTGACAAGATTTGCTT
TTGGTATCCTTTTGCAAGAGAATTGTCAACACAATATGGCAAAACCCTCT
CTTCTTGTAAAGGAATTAATGATTGGAAGTGGTTATTGGATGATGAAAGA
AACATTACAATACCAGAGGTTGCATTTGGATTCAAGTGAAGGTAAGGTTG
TTCACGAGTAGATGCATCAGTTGTGACACAGATGTTTAAATTCAAATAGA
AAGC
Run BLAST on NCBI

protein sequence of TCONS_00072821-protein

>TCONS_00072821-protein ID=TCONS_00072821-protein|Name=TCONS_00072821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
AFYLNLNICVTTDASTREQPYLHLNPNATSGIVMFLSSSNNHFQSLIPLQ
EERVLPYCVDNSLAKGYQKQILSPEEAIAQRATIMVANARFVGLDMSLYQ
PTPGDGNCFYHSIVEQIHRSTINGQLPVNFRFVDIGDLRKAVVNYIRNTN
EHDDFNLVLQDFGLHNIVVDDRFQSNNLGGDRFELYLSEQEKDAVYTEMI
VCVATAYFLNVHIFVSTDTSTREQPYFDLNPNATSGIVMYLASSNNDHFQ
SLIPTNETVLSYDTHNSLRLPTSFSNHVDFVISECSVEQHSKDKHQQSFS
RKSELVEDERQHNSLLYETETEEQFKLRINKTRIEINCNRQHLKKEKQAK
ALLQQCQEYNVPYVMPAENESLNETNQRIMKMQNKIKYQKRKLKKETKYV
RQSQPQKQTKLHQNLLQKCAQYDVPYVMPAEKDDLVETNRRIKKMKNKIT
YQRVKQIKQNLDNQQREEPMDHSQAGSSHIEDQQPSSSMDVDVQSETCDP
E
Run BLAST on NCBI

transcript from alignment at scaffold_85:17025..18528

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072821 ID=TCONS_00072821|Name=TCONS_00072821|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_85:17025..18528 (Clytia hemisphaerica)
GCTTTCTATTTGAATTTAAACATCTGTGTCACAACTGATGCATCTACTCG TGAACAACCTTACCTTCACTTGAATCCAAATGCAACCTCTGGTATTGTAA TGTTTCTTTCATCATCCAATAACCACTTCCAATCATTAATTCCTTTACAA GAAGAGAGGGTTTTGCCATATTGTGTTGACAATTCTCTTGCAAAAGGATA CCAAAAGCAAATCTTGTCACCTGAAGAAGCTATTGCCCAAAGAGCAACTA TTATGGTAGCCAATGCTCGTTTCGTTGGATTGGATATGTCATTGTATCAA CCAACACCAGGAGATGGCAACTGTTTCTATCATTCTATTGTTGAGCAAAT TCATCGATCTACAATTAATGGCCAACTTCCTGTAAACTTTAGGTTTGTGG ATATAGGAGATTTGAGAAAAGCAGTTGTCAATTACATCAGGAATACCAAC GAACATGATGATTTTAACCTGGTTTTACAAGATTTTGGTTTGCACAATAT TGTTGTAGATGATCGATTCCAGAGCAACAACTTGGGTGGTGATCGATTTG AATTGTATTTATCAGAACAAGAAAAAGATGCAGTTTACACAGAAATGATT GTTTGTGTTGCAACTGCATACTTTCTAAATGTACACATCTTTGTATCAAC CGATACAAGCACACGTGAACAACCTTACTTCGATCTAAATCCAAATGCAA CCTCTGGTATTGTAATGTACTTGGCTTCATCTAATAATGATCACTTTCAA TCCTTGATACCAACAAATGAAACAGTTTTATCATATGATACACACAATTC CCTCCGTCTGCCCACCTCATTTTCCAATCATGTCGACTTTGTTATTTCTG AATGTAGTGTTGAACAGCATTCCAAAGACAAACATCAACAATCTTTTTCA CGTAAATCAGAATTGGTGGAAGATGAACGGCAACACAACTCTCTACTGTA TGAAACTGAAACGGAGGAACAATTCAAACTTCGTATTAACAAAACGAGGA TCGAAATCAACTGTAATAGGCAACACCTGAAAAAAGAGAAGCAGGCAAAG GCTCTATTACAGCAATGTCAAGAATATAATGTTCCGTATGTCATGCCAGC TGAAAATGAATCCCTCAACGAAACTAACCAGCGTATTATGAAAATGCAAA ACAAGATCAAATACCAAAAACGAAAgcttaaaaaagaaacaaagtaTGTT AGACAAAGTCAACCACAGAAACAGACAAAGCTTCACCAAAATCTATTACA GAAATGTGCACAATATGATGTACCTTATGTTATGCCAGCCGAAAAAGACG ACCTCGTTGAAACTAatcggcgtattaaaaaaatgaaaaacaagatTACC TATCAGAGGGTGAAGCAGATTAAGCAAAATCTAGACAATCAACAACGAGA AGAACCAATGGACCACTCACAAGCTGGCTCATCACATATAGAAGATCAAC AACCTTCTTCTTCAATGGATGTTGATGTCCAGTCTGAAACTTGTGATCCT GAAC

Coding sequence (CDS) from alignment at scaffold_85:17025..18528

>TCONS_00072821 ID=TCONS_00072821|Name=TCONS_00072821|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_85:17025..18528 (Clytia hemisphaerica)
GCTTTCTATTTGAATTTAAACATCTGTGTCACAACTGATGCATCTACTCG
TGAACAACCTTACCTTCACTTGAATCCAAATGCAACCTCTGGTATTGTAA
TGTTTCTTTCATCATCCAATAACCACTTCCAATCATTAATTCCTTTACAA
GAAGAGAGGGTTTTGCCATATTGTGTTGACAATTCTCTTGCAAAAGGATA
CCAAAAGCAAATCTTGTCACCTGAAGAAGCTATTGCCCAAAGAGCAACTA
TTATGGTAGCCAATGCTCGTTTCGTTGGATTGGATATGTCATTGTATCAA
CCAACACCAGGAGATGGCAACTGTTTCTATCATTCTATTGTTGAGCAAAT
TCATCGATCTACAATTAATGGCCAACTTCCTGTAAACTTTAGGTTTGTGG
ATATAGGAGATTTGAGAAAAGCAGTTGTCAATTACATCAGGAATACCAAC
GAACATGATGATTTTAACCTGGTTTTACAAGATTTTGGTTTGCACAATAT
TGTTGTAGATGATCGATTCCAGAGCAACAACTTGGGTGGTGATCGATTTG
AATTGTATTTATCAGAACAAGAAAAAGATGCAGTTTACACAGAAATGATT
GTTTGTGTTGCAACTGCATACTTTCTAAATGTACACATCTTTGTATCAAC
CGATACAAGCACACGTGAACAACCTTACTTCGATCTAAATCCAAATGCAA
CCTCTGGTATTGTAATGTACTTGGCTTCATCTAATAATGATCACTTTCAA
TCCTTGATACCAACAAATGAAACAGTTTTATCATATGATACACACAATTC
CCTCCGTCTGCCCACCTCATTTTCCAATCATGTCGACTTTGTTATTTCTG
AATGTAGTGTTGAACAGCATTCCAAAGACAAACATCAACAATCTTTTTCA
CGTAAATCAGAATTGGTGGAAGATGAACGGCAACACAACTCTCTACTGTA
TGAAACTGAAACGGAGGAACAATTCAAACTTCGTATTAACAAAACGAGGA
TCGAAATCAACTGTAATAGGCAACACCTGAAAAAAGAGAAGCAGGCAAAG
GCTCTATTACAGCAATGTCAAGAATATAATGTTCCGTATGTCATGCCAGC
TGAAAATGAATCCCTCAACGAAACTAACCAGCGTATTATGAAAATGCAAA
ACAAGATCAAATACCAAAAACGAAAgcttaaaaaagaaacaaagtaTGTT
AGACAAAGTCAACCACAGAAACAGACAAAGCTTCACCAAAATCTATTACA
GAAATGTGCACAATATGATGTACCTTATGTTATGCCAGCCGAAAAAGACG
ACCTCGTTGAAACTAatcggcgtattaaaaaaatgaaaaacaagatTACC
TATCAGAGGGTGAAGCAGATTAAGCAAAATCTAGACAATCAACAACGAGA
AGAACCAATGGACCACTCACAAGCTGGCTCATCACATATAGAAGATCAAC
AACCTTCTTCTTCAATGGATGTTGATGTCCAGTCTGAAACTTGTGATCCT
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045201XLOC_045201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072821-exon-scaffold_85-1491911889:17025..18528TCONS_00072821-exon-scaffold_85-1491911889:17025..18528Clytia hemisphaericaexon
TCONS_00072821-exon-scaffold_85-1510915933:17025..18528TCONS_00072821-exon-scaffold_85-1510915933:17025..18528Clytia hemisphaericaexon
TCONS_00072821-exon-scaffold_85-1575043694:17025..18528TCONS_00072821-exon-scaffold_85-1575043694:17025..18528Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072821-proteinTCONS_00072821-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_85supercontigscaffold_85:17025..18528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0310191 0.0303473 0.0738899 0.145972 0.140887 0.131897 0.0692581 0.0571916 0 0.16421 0.0728807 0.0756873 0 0.0166943 0 0.0210795 0 0 0.0529759 0.155039 0.0628233 0 0.264724 0.367516 0.0375653 0 0 0.0309803
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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