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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072821 ID=TCONS_00072821|Name=TCONS_00072821|organism=Clytia hemisphaerica|type=transcript|length=1504bp
GTTCAGGATCACAAGTTTCAGACTGGACATCAACATCCATTGAAGAAGAA
GGTTGTTGATCTTCTATATGTGATGAGCCAGCTTGTGAGTGGTCCATTGG
TTCTTCTCGTTGTTGATTGTCTAGATTTTGCTTAATCTGCTTCACCCTCT
GATAGGTAatcttgtttttcatttttttaatacgccgatTAGTTTCAACG
AGGTCGTCTTTTTCGGCTGGCATAACATAAGGTACATCATATTGTGCACA
TTTCTGTAATAGATTTTGGTGAAGCTTTGTCTGTTTCTGTGGTTGACTTT
GTCTAACAtactttgtttcttttttaagcTTTCGTTTTTGGTATTTGATC
TTGTTTTGCATTTTCATAATACGCTGGTTAGTTTCGTTGAGGGATTCATT
TTCAGCTGGCATGACATACGGAACATTATATTCTTGACATTGCTGTAATA
GAGCCTTTGCCTGCTTCTCTTTTTTCAGGTGTTGCCTATTACAGTTGATT
TCGATCCTCGTTTTGTTAATACGAAGTTTGAATTGTTCCTCCGTTTCAGT
TTCATACAGTAGAGAGTTGTGTTGCCGTTCATCTTCCACCAATTCTGATT
TACGTGAAAAAGATTGTTGATGTTTGTCTTTGGAATGCTGTTCAACACTA
CATTCAGAAATAACAAAGTCGACATGATTGGAAAATGAGGTGGGCAGACG
GAGGGAATTGTGTGTATCATATGATAAAACTGTTTCATTTGTTGGTATCA
AGGATTGAAAGTGATCATTATTAGATGAAGCCAAGTACATTACAATACCA
GAGGTTGCATTTGGATTTAGATCGAAGTAAGGTTGTTCACGTGTGCTTGT
ATCGGTTGATACAAAGATGTGTACATTTAGAAAGTATGCAGTTGCAACAC
AAACAATCATTTCTGTGTAAACTGCATCTTTTTCTTGTTCTGATAAATAC
AATTCAAATCGATCACCACCCAAGTTGTTGCTCTGGAATCGATCATCTAC
AACAATATTGTGCAAACCAAAATCTTGTAAAACCAGGTTAAAATCATCAT
GTTCGTTGGTATTCCTGATGTAATTGACAACTGCTTTTCTCAAATCTCCT
ATATCCACAAACCTAAAGTTTACAGGAAGTTGGCCATTAATTGTAGATCG
ATGAATTTGCTCAACAATAGAATGATAGAAACAGTTGCCATCTCCTGGTG
TTGGTTGATACAATGACATATCCAATCCAACGAAACGAGCATTGGCTACC
ATAATAGTTGCTCTTTGGGCAATAGCTTCTTCAGGTGACAAGATTTGCTT
TTGGTATCCTTTTGCAAGAGAATTGTCAACACAATATGGCAAAACCCTCT
CTTCTTGTAAAGGAATTAATGATTGGAAGTGGTTATTGGATGATGAAAGA
AACATTACAATACCAGAGGTTGCATTTGGATTCAAGTGAAGGTAAGGTTG
TTCACGAGTAGATGCATCAGTTGTGACACAGATGTTTAAATTCAAATAGA
AAGC Run BLAST on NCBI protein sequence of TCONS_00072821-protein >TCONS_00072821-protein ID=TCONS_00072821-protein|Name=TCONS_00072821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
AFYLNLNICVTTDASTREQPYLHLNPNATSGIVMFLSSSNNHFQSLIPLQ
EERVLPYCVDNSLAKGYQKQILSPEEAIAQRATIMVANARFVGLDMSLYQ
PTPGDGNCFYHSIVEQIHRSTINGQLPVNFRFVDIGDLRKAVVNYIRNTN
EHDDFNLVLQDFGLHNIVVDDRFQSNNLGGDRFELYLSEQEKDAVYTEMI
VCVATAYFLNVHIFVSTDTSTREQPYFDLNPNATSGIVMYLASSNNDHFQ
SLIPTNETVLSYDTHNSLRLPTSFSNHVDFVISECSVEQHSKDKHQQSFS
RKSELVEDERQHNSLLYETETEEQFKLRINKTRIEINCNRQHLKKEKQAK
ALLQQCQEYNVPYVMPAENESLNETNQRIMKMQNKIKYQKRKLKKETKYV
RQSQPQKQTKLHQNLLQKCAQYDVPYVMPAEKDDLVETNRRIKKMKNKIT
YQRVKQIKQNLDNQQREEPMDHSQAGSSHIEDQQPSSSMDVDVQSETCDP
E Run BLAST on NCBI transcript from alignment at scaffold_85:17025..18528 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072821 ID=TCONS_00072821|Name=TCONS_00072821|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_85:17025..18528 (Clytia hemisphaerica)
GCTTTCTATTTGAATTTAAACATCTGTGTCACAACTGATGCATCTACTCG
TGAACAACCTTACCTTCACTTGAATCCAAATGCAACCTCTGGTATTGTAA
TGTTTCTTTCATCATCCAATAACCACTTCCAATCATTAATTCCTTTACAA
GAAGAGAGGGTTTTGCCATATTGTGTTGACAATTCTCTTGCAAAAGGATA
CCAAAAGCAAATCTTGTCACCTGAAGAAGCTATTGCCCAAAGAGCAACTA
TTATGGTAGCCAATGCTCGTTTCGTTGGATTGGATATGTCATTGTATCAA
CCAACACCAGGAGATGGCAACTGTTTCTATCATTCTATTGTTGAGCAAAT
TCATCGATCTACAATTAATGGCCAACTTCCTGTAAACTTTAGGTTTGTGG
ATATAGGAGATTTGAGAAAAGCAGTTGTCAATTACATCAGGAATACCAAC
GAACATGATGATTTTAACCTGGTTTTACAAGATTTTGGTTTGCACAATAT
TGTTGTAGATGATCGATTCCAGAGCAACAACTTGGGTGGTGATCGATTTG
AATTGTATTTATCAGAACAAGAAAAAGATGCAGTTTACACAGAAATGATT
GTTTGTGTTGCAACTGCATACTTTCTAAATGTACACATCTTTGTATCAAC
CGATACAAGCACACGTGAACAACCTTACTTCGATCTAAATCCAAATGCAA
CCTCTGGTATTGTAATGTACTTGGCTTCATCTAATAATGATCACTTTCAA
TCCTTGATACCAACAAATGAAACAGTTTTATCATATGATACACACAATTC
CCTCCGTCTGCCCACCTCATTTTCCAATCATGTCGACTTTGTTATTTCTG
AATGTAGTGTTGAACAGCATTCCAAAGACAAACATCAACAATCTTTTTCA
CGTAAATCAGAATTGGTGGAAGATGAACGGCAACACAACTCTCTACTGTA
TGAAACTGAAACGGAGGAACAATTCAAACTTCGTATTAACAAAACGAGGA
TCGAAATCAACTGTAATAGGCAACACCTGAAAAAAGAGAAGCAGGCAAAG
GCTCTATTACAGCAATGTCAAGAATATAATGTTCCGTATGTCATGCCAGC
TGAAAATGAATCCCTCAACGAAACTAACCAGCGTATTATGAAAATGCAAA
ACAAGATCAAATACCAAAAACGAAAgcttaaaaaagaaacaaagtaTGTT
AGACAAAGTCAACCACAGAAACAGACAAAGCTTCACCAAAATCTATTACA
GAAATGTGCACAATATGATGTACCTTATGTTATGCCAGCCGAAAAAGACG
ACCTCGTTGAAACTAatcggcgtattaaaaaaatgaaaaacaagatTACC
TATCAGAGGGTGAAGCAGATTAAGCAAAATCTAGACAATCAACAACGAGA
AGAACCAATGGACCACTCACAAGCTGGCTCATCACATATAGAAGATCAAC
AACCTTCTTCTTCAATGGATGTTGATGTCCAGTCTGAAACTTGTGATCCT
GAAC Coding sequence (CDS) from alignment at scaffold_85:17025..18528 >TCONS_00072821 ID=TCONS_00072821|Name=TCONS_00072821|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_85:17025..18528 (Clytia hemisphaerica)
GCTTTCTATTTGAATTTAAACATCTGTGTCACAACTGATGCATCTACTCG
TGAACAACCTTACCTTCACTTGAATCCAAATGCAACCTCTGGTATTGTAA
TGTTTCTTTCATCATCCAATAACCACTTCCAATCATTAATTCCTTTACAA
GAAGAGAGGGTTTTGCCATATTGTGTTGACAATTCTCTTGCAAAAGGATA
CCAAAAGCAAATCTTGTCACCTGAAGAAGCTATTGCCCAAAGAGCAACTA
TTATGGTAGCCAATGCTCGTTTCGTTGGATTGGATATGTCATTGTATCAA
CCAACACCAGGAGATGGCAACTGTTTCTATCATTCTATTGTTGAGCAAAT
TCATCGATCTACAATTAATGGCCAACTTCCTGTAAACTTTAGGTTTGTGG
ATATAGGAGATTTGAGAAAAGCAGTTGTCAATTACATCAGGAATACCAAC
GAACATGATGATTTTAACCTGGTTTTACAAGATTTTGGTTTGCACAATAT
TGTTGTAGATGATCGATTCCAGAGCAACAACTTGGGTGGTGATCGATTTG
AATTGTATTTATCAGAACAAGAAAAAGATGCAGTTTACACAGAAATGATT
GTTTGTGTTGCAACTGCATACTTTCTAAATGTACACATCTTTGTATCAAC
CGATACAAGCACACGTGAACAACCTTACTTCGATCTAAATCCAAATGCAA
CCTCTGGTATTGTAATGTACTTGGCTTCATCTAATAATGATCACTTTCAA
TCCTTGATACCAACAAATGAAACAGTTTTATCATATGATACACACAATTC
CCTCCGTCTGCCCACCTCATTTTCCAATCATGTCGACTTTGTTATTTCTG
AATGTAGTGTTGAACAGCATTCCAAAGACAAACATCAACAATCTTTTTCA
CGTAAATCAGAATTGGTGGAAGATGAACGGCAACACAACTCTCTACTGTA
TGAAACTGAAACGGAGGAACAATTCAAACTTCGTATTAACAAAACGAGGA
TCGAAATCAACTGTAATAGGCAACACCTGAAAAAAGAGAAGCAGGCAAAG
GCTCTATTACAGCAATGTCAAGAATATAATGTTCCGTATGTCATGCCAGC
TGAAAATGAATCCCTCAACGAAACTAACCAGCGTATTATGAAAATGCAAA
ACAAGATCAAATACCAAAAACGAAAgcttaaaaaagaaacaaagtaTGTT
AGACAAAGTCAACCACAGAAACAGACAAAGCTTCACCAAAATCTATTACA
GAAATGTGCACAATATGATGTACCTTATGTTATGCCAGCCGAAAAAGACG
ACCTCGTTGAAACTAatcggcgtattaaaaaaatgaaaaacaagatTACC
TATCAGAGGGTGAAGCAGATTAAGCAAAATCTAGACAATCAACAACGAGA
AGAACCAATGGACCACTCACAAGCTGGCTCATCACATATAGAAGATCAAC
AACCTTCTTCTTCAATGGATGTTGATGTCCAGTCTGAAACTTGTGATCCT
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072821-exon-scaffold_85-1491911889:17025..18528 | TCONS_00072821-exon-scaffold_85-1491911889:17025..18528 | Clytia hemisphaerica | exon |
| TCONS_00072821-exon-scaffold_85-1510915933:17025..18528 | TCONS_00072821-exon-scaffold_85-1510915933:17025..18528 | Clytia hemisphaerica | exon |
| TCONS_00072821-exon-scaffold_85-1575043694:17025..18528 | TCONS_00072821-exon-scaffold_85-1575043694:17025..18528 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_85 | supercontig | scaffold_85:17025..18528 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003323 | OTU_dom |
Blast
The following BLAST results are available for this feature:
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