TCONS_00072819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072819
Unique NameTCONS_00072819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072819 ID=TCONS_00072819|Name=TCONS_00072819|organism=Clytia hemisphaerica|type=transcript|length=535bp
caaaaagtgttaaaagaaAGTGAAACCCAAAAGTATCAATGCAATCGCAA
GTGTATAAAAAGTCTACAATTATAATAATCCCgcagtttgagaaaaaaac
taaatNAATCGCAAGTGTATAAAAAGTCTACAATTATAATAATCCCGCAG
TGtgagaaaaaaactaaatactTATTGGTCTGTGTGACCTTTATAAGCTT
TACTTGGTTGCTTACTTACTTGGATGCTTACTATTAAAATTTGAACGATT
TCGGTAACAGCGGCAATTGGATATCGGTAGCGGTATCGGTATGGGGTACA
GCATCTCCACAGGACAGGAAAAAGTAAtcgcaaaacttttaaaaaaattc
tctaagaaGTTCCCATATATATACAAAAAAGactacaaaaatgattttat
ttaaaaaatgtgaaaCCCAAAAGTATCAAATCATAAAGAGTACCTGCTTT
TTAGATGAGGCTCTTTTGAGCATGATTCTtgataaaatgaatgaaatgaa
attaaaacaaaaacgaTGATAAGACAATAGACACA
Run BLAST on NCBI

transcript from alignment at scaffold_85:14192..14726

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072819 ID=TCONS_00072819|Name=TCONS_00072819|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_85:14192..14726 (Clytia hemisphaerica)
TGTGTCTATTGTCTTATCAtcgtttttgttttaatttcatttcattcatt
ttatcaAGAATCATGCTCAAAAGAGCCTCATCTAAAAAGCAGGTACTCTT
TATGATTTGATACTTTTGGGtttcacattttttaaataaaatcatttttg
tagtCTTTTTTGTATATATATGGGAACttcttagagaatttttttaaaag
ttttgcgaTTACTTTTTCCTGTCCTGTGGAGATGCTGTACCCCATACCGA
TACCGCTACCGATATCCAATTGCCGCTGTTACCGAAATCGTTCAAATTTT
AATAGTAAGCATCCAAGTAAGTAAGCAACCAAGTAAAGCTTATAAAGGTC
ACACAGACCAATAagtatttagtttttttctcaCACTGCGGGATTATTAT
AATTGTAGACTTTTTATACACTTGCGATTNatttagtttttttctcaaac
tgcGGGATTATTATAATTGTAGACTTTTTATACACTTGCGATTGCATTGA
TACTTTTGGGTTTCACTttcttttaacactttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045199XLOC_045199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072819-exon-scaffold_85-1491911889:14192..14726TCONS_00072819-exon-scaffold_85-1491911889:14192..14726Clytia hemisphaericaexon
TCONS_00072819-exon-scaffold_85-1510915933:14192..14726TCONS_00072819-exon-scaffold_85-1510915933:14192..14726Clytia hemisphaericaexon
TCONS_00072819-exon-scaffold_85-1575043694:14192..14726TCONS_00072819-exon-scaffold_85-1575043694:14192..14726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_85supercontigscaffold_85:14192..14726 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.120552	0.14676	0	0.139915	0.130987	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.113443	0.116843	0.20856	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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