TCONS_00072818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072818
Unique NameTCONS_00072818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072818 ID=TCONS_00072818|Name=TCONS_00072818|organism=Clytia hemisphaerica|type=transcript|length=525bp
tattctttttctattttaggtTGGCGAATTCATCCAcaacagcaaaattt
tactCAAGTTTGATCTTACTTTACTTATTGCTTCTTTATACATCATAATA
GTGTCTAAAAGTGAAAATCGGCCAAATCGTATGAGGTACTTCATGCATAT
CTCTGGACTGGAgtgacatttttcaaacaaacaattttGCATTTCTGACG
TTATGTTAAAAGTTGaattaaacaaatttgtttACTTATAGATTTCCTGG
GCTATCTGTTCTGCTGTATAATGAAGCTATAAATTGCCACTTACGACATT
CGAAATTGTTTGTAATTCACCCAAGATATTGATCACACTTTCTTACTGAA
CGCTCATTGGTTCTTTCATGTTGAAAgTTTCTACTCTAGCACGGTGGATG
AGCATGTCACGACGTCTATCAAAGCCAACGACGCCCAaagataaaatttt
ataaatagctgttattttttatgaatggggaaaaataataaattgaaaGT
AAACTTTAACTAGTCAATTTCCTGC
Run BLAST on NCBI

transcript from alignment at scaffold_85:25704..26485+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072818 ID=TCONS_00072818|Name=TCONS_00072818|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at scaffold_85:25704..26485+ (Clytia hemisphaerica)
tattctttttctattttaggtTGGCGAATTCATCCAcaacagcaaaattt
tactCAAGTTTGATCTTACTTTACTTATTGCTTCTTTATACATCATAATA
GTGTCTAAAAGTGAAAATCGGCCAAATCGTATGAGGTACTTCATGCATAT
CTCTGGACTGGAgtgacatttttcaaacaaacaattttGCATTTCTGACG
TTATGTTAAAAGTTGaattaaacaaatttgtttACTTATAGATTTCCTGG
GCTATCTGTTCTGCTGTATAATGAAGCTATAAATTGCCACTTACGACATT
CGAAATTGTTTGTAATTCACCCAAGATATTGATCACACTTTCTTACTGAA
CGCTCATTGGTTCTTTCATGTTGAAAGTGAGTATTCTGAAGTTTTATAAC
AACCAAGTTATATCttcttaatgattttttaaaaatgaatctGAAATTAT
CTGTTCGCTCAATCTGACCGGAGAAATTGACCTGACCGCCAATCTTTGAA
GAAGAGTCTCCTATACATCAGTTCTCCCAGCTATGAATTTATCAGCTAGA
GCGGGAATATAGATATTATCAAGGCAATATTCACTCTTTTTAAACTGTTT
TAAATacattgaattgttttttttaatttacaggTTTCTACTCTAGCACG
GTGGATGAGCATGTCACGACGTCTATCAAAGCCAACGACGCCCAaagata
aaattttataaatagctgttattttttatgaatggggaaaaataataaat
tgaaaGTAAACTTTAACTAGTCAATTTCCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045198XLOC_045198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072818-exon-scaffold_85-1491911889:25704..26079TCONS_00072818-exon-scaffold_85-1491911889:25704..26079Clytia hemisphaericaexon
TCONS_00072818-exon-scaffold_85-1510915933:25704..26079TCONS_00072818-exon-scaffold_85-1510915933:25704..26079Clytia hemisphaericaexon
TCONS_00072818-exon-scaffold_85-1575043694:25704..26079TCONS_00072818-exon-scaffold_85-1575043694:25704..26079Clytia hemisphaericaexon
TCONS_00072818-exon-scaffold_85-1491911889:26337..26485TCONS_00072818-exon-scaffold_85-1491911889:26337..26485Clytia hemisphaericaexon
TCONS_00072818-exon-scaffold_85-1510915933:26337..26485TCONS_00072818-exon-scaffold_85-1510915933:26337..26485Clytia hemisphaericaexon
TCONS_00072818-exon-scaffold_85-1575043694:26337..26485TCONS_00072818-exon-scaffold_85-1575043694:26337..26485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_85supercontigscaffold_85:25704..26485 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.112271	0.109482	0.254239	0.373099	0.302808	0.239283	0.866055	0.270263	0.378436	0.234377	0.682475	0.224316	0.298673	0.387718	0.255005	0.068415	0	0.345544	0	0.249776	0.542751	0.317682	0.257456	0.117033	0.241082	1.39854	0.769731	0.328591	0	0.12696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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