TCONS_00072815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072815
Unique NameTCONS_00072815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072815 ID=TCONS_00072815|Name=TCONS_00072815|organism=Clytia hemisphaerica|type=transcript|length=1836bp
cttaagcatacacgagcctgaccaaggggcagacacttgcttataaaaaa
acatgtattgtaTTATAAAAGCTCATTGACATCATCATTATTATCATATA
ATTTCATTATTGATATAACATTCTACAGCAATCTGTTTGATATAGAGAAG
TAACAAAGAAAGGTTGTAAGAAACGATAATTTGAGCTTATAGTTTTGAAG
AGACACTTACATTTCAATAAAATGTGAAAACCGTCAATGATGGCTAACAT
TATAGAATATTTACCCACCAACaacttattttctttcaaagtgGTTTTTC
TGGCTACATTGACATCAATTCCAGCAGGTAGCGTTGTCTTCGTAAACACT
TTAATAGCTCCTGCACTGCAATGCGAATGGGATCTAACGACCATGGAAGT
GACTCTTATATCAGTTGCTTTTTACGTTGGTTGTGCTATAGGCTCATGGT
ACTGGGGTCGAATAGCGGACATTTACGGGCGCAGGAAAACCTTATTAGCT
ACTGTTAGTACTATGGTGTATTTTGCGTTACTTTCGACAGCTAGTTCTTC
GTATGGTTTTCATTTACTGACACGATTTTTTGTCGGGGTTGGATACGCCT
CTTCATTCATCTTATCCGTGATTTATAACACGGAGTTCACGAAAAGCACG
GATCACGGAAAAGCTGTGTTCTTTTACAATCTAATGTACACGTTTGGATG
TTTGTTTTCGATAGCTGTTTCTTATTGGACGTTAAACCGCTACGGATGGC
GTATATACACACTAGCCTCGCTATCACCCAGCCTCGTATTGATATGTCTC
ATGGTCGCTTTTCTACCCGAGTCCATCCTATATTTACAAGCTCAGGGACG
AACTACAGAGGTTTTAGAATTATTAGATGATATATCTAAAACTACGAAAA
ACTATTTGCCCAAAGATGTCGTTTTCAAAAAAACGAGAACCATGGAACGT
GACCAAGAAGGCTATATAgcagtgtttttaaaacatcgtgtcaaaatttg
tggaCTTTGTTTTTACGGTGTACCCATGTTGTTGAATTACTACGGACTAC
CATTTTTCGTTGACTTTAAACTGCAACATTCTGGTACGTGTAAACTGCTT
GCTAACAGAACTAAATTATCGGTCGCTTGTTCCATGTTAACTGATTCGGA
TCTTCTGCGGACGTTTTTGATCAACCTGGGATATATACCCGGTGCTTTTA
TTGGTTATTTTATTGCAGAGAAATTGGGTCGTAAAATACTGTTAAACACG
ACGATGGTTCTCTTAGCTGCATGTTATTTCAGTCAACTCATATGCTTACC
TCACATCTTGTCTCATTTATTACTGTTTCTCGCTTCGGGGTTTTCGTTAT
GCGCTGATTGCTTTATTGTGTTATACGCATCGGAATTATTCCCGACAAAT
GTAAGAACAACGGCAACAGGGATATCGGCAActgtttggaaaactttttc
CATCCTATCGCCATTGTTGTTCCAGCATTTTATATATTTGAACACGACAG
TTGTCATAGTTTTGATGGGAGCTTGGTGTATTGTAGGAATGTTTGGTTTA
TACCCGCTACCTGAAACTCTTGGTAAAAACCTAAAAGATTTTTGAGTTTA
GAAAAACCTCATATGAATGATAGATTATTCGTATAAATATGAATAAAATA
GATAGATATATTTGTAAGAatataccgggtgtcccagaaaacggaccctc
tttgaagtgaattttctcgagttctatgaacttTTAAAGAATCAATCTTT
TTACATCGGAAataagaaagataaacttaaattttgagggatcatttgtc
aaatttggtcaattggatcaaaagttataatCTAAA
Run BLAST on NCBI

protein sequence of TCONS_00072815-protein

>TCONS_00072815-protein ID=TCONS_00072815-protein|Name=TCONS_00072815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MMANIIEYLPTNNLFSFKVVFLATLTSIPAGSVVFVNTLIAPALQCEWDL
TTMEVTLISVAFYVGCAIGSWYWGRIADIYGRRKTLLATVSTMVYFALLS
TASSSYGFHLLTRFFVGVGYASSFILSVIYNTEFTKSTDHGKAVFFYNLM
YTFGCLFSIAVSYWTLNRYGWRIYTLASLSPSLVLICLMVAFLPESILYL
QAQGRTTEVLELLDDISKTTKNYLPKDVVFKKTRTMERDQEGYIAVFLKH
RVKICGLCFYGVPMLLNYYGLPFFVDFKLQHSGTCKLLANRTKLSVACSM
LTDSDLLRTFLINLGYIPGAFIGYFIAEKLGRKILLNTTMVLLAACYFSQ
LICLPHILSHLLLFLASGFSLCADCFIVLYASELFPTNVRTTATGISATV
WKTFSILSPLLFQHFIYLNTTVVIVLMGAWCIVGMFGLYPLPETLGKNLK
DF
Run BLAST on NCBI

transcript from alignment at scaffold_84:162087..163922

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072815 ID=TCONS_00072815|Name=TCONS_00072815|organism=Clytia hemisphaerica|type=transcript|length=1836bp|location=Sequence derived from alignment at scaffold_84:162087..163922 (Clytia hemisphaerica)
TTTAGattataacttttgatccaattgaccaaatttgacaaatgatccct
caaaatttaagtttatctttcttatTTCCGATGTAAAAAGATTGATTCTT
TAAaagttcatagaactcgagaaaattcacttcaaagagggtccgttttc
tgggacacccggtatatTCTTACAAATATATCTATCTATTTTATTCATAT
TTATACGAATAATCTATCATTCATATGAGGTTTTTCTAAACTCAAAAATC
TTTTAGGTTTTTACCAAGAGTTTCAGGTAGCGGGTATAAACCAAACATTC
CTACAATACACCAAGCTCCCATCAAAACTATGACAACTGTCGTGTTCAAA
TATATAAAATGCTGGAACAACAATGGCGATAGGATGgaaaaagttttcca
aacagTTGCCGATATCCCTGTTGCCGTTGTTCTTACATTTGTCGGGAATA
ATTCCGATGCGTATAACACAATAAAGCAATCAGCGCATAACGAAAACCCC
GAAGCGAGAAACAGTAATAAATGAGACAAGATGTGAGGTAAGCATATGAG
TTGACTGAAATAACATGCAGCTAAGAGAACCATCGTCGTGTTTAACAGTA
TTTTACGACCCAATTTCTCTGCAATAAAATAACCAATAAAAGCACCGGGT
ATATATCCCAGGTTGATCAAAAACGTCCGCAGAAGATCCGAATCAGTTAA
CATGGAACAAGCGACCGATAATTTAGTTCTGTTAGCAAGCAGTTTACACG
TACCAGAATGTTGCAGTTTAAAGTCAACGAAAAATGGTAGTCCGTAGTAA
TTCAACAACATGGGTACACCGTAAAAACAAAGtccacaaattttgacacg
atgttttaaaaacactgcTATATAGCCTTCTTGGTCACGTTCCATGGTTC
TCGTTTTTTTGAAAACGACATCTTTGGGCAAATAGTTTTTCGTAGTTTTA
GATATATCATCTAATAATTCTAAAACCTCTGTAGTTCGTCCCTGAGCTTG
TAAATATAGGATGGACTCGGGTAGAAAAGCGACCATGAGACATATCAATA
CGAGGCTGGGTGATAGCGAGGCTAGTGTGTATATACGCCATCCGTAGCGG
TTTAACGTCCAATAAGAAACAGCTATCGAAAACAAACATCCAAACGTGTA
CATTAGATTGTAAAAGAACACAGCTTTTCCGTGATCCGTGCTTTTCGTGA
ACTCCGTGTTATAAATCACGGATAAGATGAATGAAGAGGCGTATCCAACC
CCGACAAAAAATCGTGTCAGTAAATGAAAACCATACGAAGAACTAGCTGT
CGAAAGTAACGCAAAATACACCATAGTACTAACAGTAGCTAATAAGGTTT
TCCTGCGCCCGTAAATGTCCGCTATTCGACCCCAGTACCATGAGCCTATA
GCACAACCAACGTAAAAAGCAACTGATATAAGAGTCACTTCCATGGTCGT
TAGATCCCATTCGCATTGCAGTGCAGGAGCTATTAAAGTGTTTACGAAGA
CAACGCTACCTGCTGGAATTGATGTCAATGTAGCCAGAAAAACcactttg
aaagaaaataagttGTTGGTGGGTAAATATTCTATAATGTTAGCCATCAT
TGACGGTTTTCACATTTTATTGAAATGTAAGTGTCTCTTCAAAACTATAA
GCTCAAATTATCGTTTCTTACAACCTTTCTTTGTTACTTCTCTATATCAA
ACAGATTGCTGTAGAATGTTATATCAATAATGAAATTATATGATAATAAT
GATGATGTCAATGAGCTTTTATAAtacaatacatgtttttttataagcaa
gtgtctgccccttggtcaggctcgtgtatgcttaag

Coding sequence (CDS) from alignment at scaffold_84:162087..163922

>TCONS_00072815 ID=TCONS_00072815|Name=TCONS_00072815|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_84:162087..163922 (Clytia hemisphaerica)
TCAAAAATCTTTTAGGTTTTTACCAAGAGTTTCAGGTAGCGGGTATAAAC
CAAACATTCCTACAATACACCAAGCTCCCATCAAAACTATGACAACTGTC
GTGTTCAAATATATAAAATGCTGGAACAACAATGGCGATAGGATGgaaaa
agttttccaaacagTTGCCGATATCCCTGTTGCCGTTGTTCTTACATTTG
TCGGGAATAATTCCGATGCGTATAACACAATAAAGCAATCAGCGCATAAC
GAAAACCCCGAAGCGAGAAACAGTAATAAATGAGACAAGATGTGAGGTAA
GCATATGAGTTGACTGAAATAACATGCAGCTAAGAGAACCATCGTCGTGT
TTAACAGTATTTTACGACCCAATTTCTCTGCAATAAAATAACCAATAAAA
GCACCGGGTATATATCCCAGGTTGATCAAAAACGTCCGCAGAAGATCCGA
ATCAGTTAACATGGAACAAGCGACCGATAATTTAGTTCTGTTAGCAAGCA
GTTTACACGTACCAGAATGTTGCAGTTTAAAGTCAACGAAAAATGGTAGT
CCGTAGTAATTCAACAACATGGGTACACCGTAAAAACAAAGtccacaaat
tttgacacgatgttttaaaaacactgcTATATAGCCTTCTTGGTCACGTT
CCATGGTTCTCGTTTTTTTGAAAACGACATCTTTGGGCAAATAGTTTTTC
GTAGTTTTAGATATATCATCTAATAATTCTAAAACCTCTGTAGTTCGTCC
CTGAGCTTGTAAATATAGGATGGACTCGGGTAGAAAAGCGACCATGAGAC
ATATCAATACGAGGCTGGGTGATAGCGAGGCTAGTGTGTATATACGCCAT
CCGTAGCGGTTTAACGTCCAATAAGAAACAGCTATCGAAAACAAACATCC
AAACGTGTACATTAGATTGTAAAAGAACACAGCTTTTCCGTGATCCGTGC
TTTTCGTGAACTCCGTGTTATAAATCACGGATAAGATGAATGAAGAGGCG
TATCCAACCCCGACAAAAAATCGTGTCAGTAAATGAAAACCATACGAAGA
ACTAGCTGTCGAAAGTAACGCAAAATACACCATAGTACTAACAGTAGCTA
ATAAGGTTTTCCTGCGCCCGTAAATGTCCGCTATTCGACCCCAGTACCAT
GAGCCTATAGCACAACCAACGTAAAAAGCAACTGATATAAGAGTCACTTC
CATGGTCGTTAGATCCCATTCGCATTGCAGTGCAGGAGCTATTAAAGTGT
TTACGAAGACAACGCTACCTGCTGGAATTGATGTCAATGTAGCCAGAAAA
ACcactttgaaagaaaataagttGTTGGTGGGTAAATATTCTATAATGTT
AGCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045195XLOC_045195Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072815-proteinTCONS_00072815-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072815-exon-scaffold_84-1491911889:162087..163922TCONS_00072815-exon-scaffold_84-1491911889:162087..163922Clytia hemisphaericaexon
TCONS_00072815-exon-scaffold_84-1510915933:162087..163922TCONS_00072815-exon-scaffold_84-1510915933:162087..163922Clytia hemisphaericaexon
TCONS_00072815-exon-scaffold_84-1575043694:162087..163922TCONS_00072815-exon-scaffold_84-1575043694:162087..163922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:162087..163922 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20679	1.08696	1.73383	2.13724	2.49952	2.32346	1.54704	1.6852	0.832079	1.81202	0.797484	0.659153	0.875079	0.498634	0.262003	0.533236	1.27723	2.73612	1.18217	0.509377	1.70847	2.01436	1.90014	1.81843	2.30708	1.97755	0.747496	1.08496	0.750279	0.863466
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00072815 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.938e-28
Identity = 109/443 (24.60%), Postives = 193/443 (43.57%), Query Frame = 3 
Query:  279 FSFKVVFLATLTSIPAGSVVFVNTLIAPALQCEWDLTTMEVTLISVAFYVGCAIGSWYWGRIADIYGRRKTLLATVSTMVYFALLSTASSSYGFHLLTRFFVGVGYASSFILSVIYNTEFTKSTDHGKAVFFYNLMYTFGCLFSIAVSYWTLNRYGWRIYTLASLSPSLVLICLMVAFLPESILYLQAQGRTTEVLELLDDISKTTKNYLPKDVVFKKTRTMERDQEGYIAVFLKH-RVKICGLCFYGVPMLLNYYGLPFFVDFKLQHSGTCKLLANR----TKLSVACSMLTDSDLLRTFLINLGYIPGAFIGYFIAEKLGRKILLNTTMVLLAACYFSQXXXXXXXXXXXXXXXXXXXXXXXDCFIVLYASELFPTNVRTTATGISATVWKTFSILSPLLFQHFIYLNTTVVIVLMGAWCIVGMFGLYPLP-ETLGKNLKD 1589
            F +K+  L  L  +     + + +++AP L CEW L + +V L++   +VG    S  WG I+D YGR+  L  +V   +Y+ +LS  +  Y + L+ R  VG G       SV    EF       K +    + +  G +F + ++ + +   GWR   + S  P L+L  ++  +LPES  Y    G   + +  L  I+      +P   + K   + + D+     +F  H R     L F       +YYGL        Q    C + + +     K S+AC  L++ D +      L   PG  +  +I ++LGRK  +    V+ + C     IC+   +  LLLF+A  F         +Y  E++PT  R    G  + + +  ++++P + Q  +  +  + + +    C++       LP ET G+ L++
Sbjct:   82 FQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIG-GVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP-LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMP---LGKLIISRQEDRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGLQE 519
The following BLAST results are available for this feature:
BLAST of TCONS_00072815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVOP7.938e-2824.60Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
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