TCONS_00072811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072811
Unique NameTCONS_00072811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072811 ID=TCONS_00072811|Name=TCONS_00072811|organism=Clytia hemisphaerica|type=transcript|length=568bp
TGCCACTAATTATGCACATCTCGCCCATTAAAATGAATCCCTTGACAACA
AAAACAATTCCAAAAGCCTTGCATATGAAACGAAAATATCAACAGATAAT
TCAGTGACTGTTTTAAGAGATCGTACAAGAAAACTATAAACGTAAGTGGG
CGAAGTGAATTGTGTATGAAAATCAATATTGAAAGTTTGACGCAGATTTT
GTGGTGATTTGTGGTAGTTTTAAACTGGAAAACCGTGAAAAAgacgtttt
gattttttgagttGAGTTATATATCACGTTGTTAAGATGGAAGTGGCTCT
CGTTGGATGTCTTTATAAAGGGTTAGGTCGTTCTGGTGGTAAGATACAAC
ACACAATTTCACCAACAAAAACAATGGCACACGAGGATGAAATTTTAACA
GAGGAAATTATAAGTGTTGAACATTCAAATGATTCTTTTAACAGAGGATC
ACCTGTGAAATTGAATAAGAGGCAAATTGTTGAAGAAGATTTAGTTGAGA
CTTTGGATGATAATGTTTTGAATTGCGAATGTCCACCTGTTCCTGATTGG
AGCCCAGATGGGGAGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_84:9146..9713

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072811 ID=TCONS_00072811|Name=TCONS_00072811|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at scaffold_84:9146..9713 (Clytia hemisphaerica)
TTTCTCCCCATCTGGGCTCCAATCAGGAACAGGTGGACATTCGCAATTCA
AAACATTATCATCCAAAGTCTCAACTAAATCTTCTTCAACAATTTGCCTC
TTATTCAATTTCACAGGTGATCCTCTGTTAAAAGAATCATTTGAATGTTC
AACACTTATAATTTCCTCTGTTAAAATTTCATCCTCGTGTGCCATTGTTT
TTGTTGGTGAAATTGTGTGTTGTATCTTACCACCAGAACGACCTAACCCT
TTATAAAGACATCCAACGAGAGCCACTTCCATCTTAACAACGTGATATAT
AACTCaactcaaaaaatcaaaacgtcTTTTTCACGGTTTTCCAGTTTAAA
ACTACCACAAATCACCACAAAATCTGCGTCAAACTTTCAATATTGATTTT
CATACACAATTCACTTCGCCCACTTACGTTTATAGTTTTCTTGTACGATC
TCTTAAAACAGTCACTGAATTATCTGTTGATATTTTCGTTTCATATGCAA
GGCTTTTGGAATTGTTTTTGTTGTCAAGGGATTCATTTTAATGGGCGAGA
TGTGCATAATTAGTGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045191XLOC_045191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072811-exon-scaffold_84-1491911889:9146..9713TCONS_00072811-exon-scaffold_84-1491911889:9146..9713Clytia hemisphaericaexon
TCONS_00072811-exon-scaffold_84-1510915933:9146..9713TCONS_00072811-exon-scaffold_84-1510915933:9146..9713Clytia hemisphaericaexon
TCONS_00072811-exon-scaffold_84-1575043694:9146..9713TCONS_00072811-exon-scaffold_84-1575043694:9146..9713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:9146..9713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.179	50.8827	69.8215	62.8359	1.46596	0.631868	2.15991	2.61681	1.74882	1.54728	1.00122	0.592345	4.66645	5.05092	4.09643	5.23918	0.148373	1.52078	0	0.659575	0.0955485	0.139816	11.6709	9.88941	0	0	1.08406	1.44617	6.25214	8.158
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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