TCONS_00072810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072810
Unique NameTCONS_00072810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072810 ID=TCONS_00072810|Name=TCONS_00072810|organism=Clytia hemisphaerica|type=transcript|length=512bp
CACGGGACTTTCTATTTTGTTGTTTACTTTCATAAAATTATCCTCGCCGT
AACACCAAGCGCTATTTTTATCAGTCTTTTTCAGAGATATATTATAAAAA
GTGGATTGATACTTAAAGAATGATACTATATTTAGTTGGGATTTACAATT
TGGGATCAGGATGAAAAGATTTCAAATGCTTGTTTCCAGAAGAGTTTCGT
GGCGAATTCATAGAAGTCAGTCCACATTGACAGCAAATCAGCAGAAGCTA
ATGGCAAGAGGACTTCCAAAGAAGCAGCCTATTCAAGGGGTTCAAAACAT
TGTTGTGGTGGCCTCAGGAAAAGGAGGAGTTGGGAAATCAACAACTACAG
taaATCTCGCAATGGCAATGATGGCAAGTCAAAAGGTATTATGGTTTTTA
TTCTCAGCAAAGGTAGCATGTTTTTCTATGCTAGGATTTTGAAAATCATG
TATACAGTAGACTCTTGGTTATTCAAAGCACCAAATGGGGTAAGAATTTG
CCTCGAATAACT
Run BLAST on NCBI

transcript from alignment at scaffold_84:314664..316145-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072810 ID=TCONS_00072810|Name=TCONS_00072810|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at scaffold_84:314664..316145- (Clytia hemisphaerica)
CACGGGACTTTCTATTTTGTTGTTTACTTTCATAAAATTATCCTCGCCGT AACACCAAGCGCTATTTTTATCAGTCTTTTTCAGAGATATATTATAAAAA GTGGATTGATACTTAAAGAATGATACTATATTTAGGTAAGCTGTAGATTT ACTTTACCGAACAAGACCAAAAAAGCTATGTAAAACCATAAGAGATGTTT TTCAAATCCACATGGCATCCATATGGTCGTCGATAGAATCAAAACAAATC ATCGACGACTTCTTGCCTTTTGTTGATATCTTTTTCAGTTGGGATTTACA ATTTGGGATCAGGATGAAAAGATTTCAAATGCTTGTTTCCAGAAGAGTTT CGTGGCGAATTCATAGAAGTCAGGTATAAGTGTTGAAGTTTTCATTTCAC TTGAAAGTCGTTTGTATCATCGATGTAATCTTGAAATATTTTATAAAAAT CATAAATTTTACATGCATTTGGTCGTAAAATTAAAGGGACAACAAAAATA TGTTCATAGTTTCTCCCGCTATTACCACTGCCCACTGTACCAATTTTTAT AAAACCTCTTTTTTCCTCTACATTTGAGAGAAATTTTAGATTTGATCAAC TTTTTTTTGGGGGGGGGGCCACATATATATATATTATAGACCTTTTTTTA AAGAGGCAGCCATGTTGAATAATTATGTACTCCAGCATAAAAGCAATGAT ACAGCCATGCATAATTTTTAAAATATGCACGATACAGTAATTAGATTACT ATAGAGATTTTTTTTTAATTTATCACACGTTTTGTCATAATGACAATTTG CAGCCCCTTATGTTTTTGCATCTTCCTGCGCAAAATTTCAATAAATTAAT GAAATAATGATAAATTATATTCTCATACTTACTAGTCCACATTGACAGCA AATCAGCAGAAGCTAATGGCAAGAGGACTTCCAAAGAAGCAGCCTATTCA AGGGGTTCAAAACATTGTTGTGGTGGCCTCAGGAAAAGGAGGAGTTGGGA AATCAACAACTACAGGCAGGTCAAAATATTCTACTGACAGGCCATATTTT AGAAAGGCAAGGCAGCGTCCGTTGGTAACCAAAAAGGGCACTTTTTCCTG TGTTTTTTCACTAAAAAGGCTGTTTTTACCAATATTTTTGTAGTTTCAAG AGGGGCAGCGTCCGATAACCGGACGCTTAAAGGGCATGAAAAATGGCCTG ACTGATGTTGTATTTTTAAATACACTTTTATAGCAGACTACCAAAACTAT TCACCATATAGAATAGAAAACAGGAGATGGTATTGTATGGTAAAATTGTA ATTTATTTTTTTCATTTTAGTAAATCTCGCAATGGCAATGATGGCAAGTC AAAAGGTATTATGGTTTTTATTCTCAGCAAAGGTAGCATGTTTTTCTATG CTAGGATTTTGAAAATCATGTATACAGTAGACTCTTGGTTATTCAAAGCA CCAAATGGGGTAAGAATTTGCCTCGAATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045190XLOC_045190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072810-exon-scaffold_84-1575043694:316011..316145TCONS_00072810-exon-scaffold_84-1575043694:316011..316145Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1575043694:315773..315857TCONS_00072810-exon-scaffold_84-1575043694:315773..315857Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1575043694:315131..315260TCONS_00072810-exon-scaffold_84-1575043694:315131..315260Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1575043694:314664..314825TCONS_00072810-exon-scaffold_84-1575043694:314664..314825Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:316011..316145TCONS_00072810-exon-scaffold_84-1510915933:316011..316145Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:315773..315857TCONS_00072810-exon-scaffold_84-1510915933:315773..315857Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:315131..315260TCONS_00072810-exon-scaffold_84-1510915933:315131..315260Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:314664..314825TCONS_00072810-exon-scaffold_84-1510915933:314664..314825Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:316011..316145TCONS_00072810-exon-scaffold_84-1491911889:316011..316145Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:315773..315857TCONS_00072810-exon-scaffold_84-1491911889:315773..315857Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:315131..315260TCONS_00072810-exon-scaffold_84-1491911889:315131..315260Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:314664..314825TCONS_00072810-exon-scaffold_84-1491911889:314664..314825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:314664..316145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1772 11.8747 5.70065 4.15047 19.4217 12.8518 8.42998 11.2744 8.88012 8.92179 12.3371 13.1007 12.3037 22.8055 12.4995 13.4139 12.3057 12.3426 11.6999 10.2894 12.4528 11.5959 10.0688 10.7407 7.54275 10.4342 10.7569 11.6514 8.18741 8.34167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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