TCONS_00072810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072810
Unique NameTCONS_00072810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072810 ID=TCONS_00072810|Name=TCONS_00072810|organism=Clytia hemisphaerica|type=transcript|length=512bp
CACGGGACTTTCTATTTTGTTGTTTACTTTCATAAAATTATCCTCGCCGT
AACACCAAGCGCTATTTTTATCAGTCTTTTTCAGAGATATATTATAAAAA
GTGGATTGATACTTAAAGAATGATACTATATTTAGTTGGGATTTACAATT
TGGGATCAGGATGAAAAGATTTCAAATGCTTGTTTCCAGAAGAGTTTCGT
GGCGAATTCATAGAAGTCAGTCCACATTGACAGCAAATCAGCAGAAGCTA
ATGGCAAGAGGACTTCCAAAGAAGCAGCCTATTCAAGGGGTTCAAAACAT
TGTTGTGGTGGCCTCAGGAAAAGGAGGAGTTGGGAAATCAACAACTACAG
taaATCTCGCAATGGCAATGATGGCAAGTCAAAAGGTATTATGGTTTTTA
TTCTCAGCAAAGGTAGCATGTTTTTCTATGCTAGGATTTTGAAAATCATG
TATACAGTAGACTCTTGGTTATTCAAAGCACCAAATGGGGTAAGAATTTG
CCTCGAATAACT
Run BLAST on NCBI

transcript from alignment at scaffold_84:314664..316145-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072810 ID=TCONS_00072810|Name=TCONS_00072810|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at scaffold_84:314664..316145- (Clytia hemisphaerica)
CACGGGACTTTCTATTTTGTTGTTTACTTTCATAAAATTATCCTCGCCGT
AACACCAAGCGCTATTTTTATCAGTCTTTTTCAGAGATATATTATAAAAA
GTGGATTGATACTTAAAGAATGATACTATATTTAGGTAAGCTGTAGATTT
ACTTTACCGAACAAGACCAAAAAAGCTATGTAAAACCATAAGAGATGTTT
TTCAAATCCACATGGCATCCATATGGTCGTCGATAGAATCAAAACAAATC
ATCGACGACTTCTTGCCTTTTGTTGATATCTTTTTCAGTTGGGATTTACA
ATTTGGGATCAGGATGAAAAGATTTCAAATGCTTGTTTCCAGAAGAGTTT
CGTGGCGAATTCATAGAAGTCAGGTATAAGTGTTGAAGTTTTCATTTCAC
TTGAAAGTCGTTTGTATCATCGATGTAATCTTGAAATATTTTATAAAAAT
CATAAATTTTACATGCATTTGGTCGTAAAATTAAAGGGACAACAAAAATA
TGTTCATAGTTTCTCCCGCTATTACCACTGCCCACTGTACCAATTTTTAT
AAAACCTCTTTTTTCCTCTACATTTGAGAGAAATTTTAGATTTGATCAAC
TTTTTTTTGGGGGGGGGGCCACATATATATATATTATAGACCTTTTTTTA
AAGAGGCAGCCATGTTGAATAATTATGTACTCCAGCATAAAAGCAATGAT
ACAGCCATGCATAATTTTTAAAATATGCACGATACAGTAATTAGATTACT
ATAGAGATTTTTTTTTAATTTATCACACGTTTTGTCATAATGACAATTTG
CAGCCCCTTATGTTTTTGCATCTTCCTGCGCAAAATTTCAATAAATTAAT
GAAATAATGATAAATTATATTCTCATACTTACTAGTCCACATTGACAGCA
AATCAGCAGAAGCTAATGGCAAGAGGACTTCCAAAGAAGCAGCCTATTCA
AGGGGTTCAAAACATTGTTGTGGTGGCCTCAGGAAAAGGAGGAGTTGGGA
AATCAACAACTACAGGCAGGTCAAAATATTCTACTGACAGGCCATATTTT
AGAAAGGCAAGGCAGCGTCCGTTGGTAACCAAAAAGGGCACTTTTTCCTG
TGTTTTTTCACTAAAAAGGCTGTTTTTACCAATATTTTTGTAGTTTCAAG
AGGGGCAGCGTCCGATAACCGGACGCTTAAAGGGCATGAAAAATGGCCTG
ACTGATGTTGTATTTTTAAATACACTTTTATAGCAGACTACCAAAACTAT
TCACCATATAGAATAGAAAACAGGAGATGGTATTGTATGGTAAAATTGTA
ATTTATTTTTTTCATTTTAGTAAATCTCGCAATGGCAATGATGGCAAGTC
AAAAGGTATTATGGTTTTTATTCTCAGCAAAGGTAGCATGTTTTTCTATG
CTAGGATTTTGAAAATCATGTATACAGTAGACTCTTGGTTATTCAAAGCA
CCAAATGGGGTAAGAATTTGCCTCGAATAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045190XLOC_045190Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072810-exon-scaffold_84-1575043694:316011..316145TCONS_00072810-exon-scaffold_84-1575043694:316011..316145Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1575043694:315773..315857TCONS_00072810-exon-scaffold_84-1575043694:315773..315857Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1575043694:315131..315260TCONS_00072810-exon-scaffold_84-1575043694:315131..315260Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1575043694:314664..314825TCONS_00072810-exon-scaffold_84-1575043694:314664..314825Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:316011..316145TCONS_00072810-exon-scaffold_84-1510915933:316011..316145Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:315773..315857TCONS_00072810-exon-scaffold_84-1510915933:315773..315857Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:315131..315260TCONS_00072810-exon-scaffold_84-1510915933:315131..315260Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1510915933:314664..314825TCONS_00072810-exon-scaffold_84-1510915933:314664..314825Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:316011..316145TCONS_00072810-exon-scaffold_84-1491911889:316011..316145Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:315773..315857TCONS_00072810-exon-scaffold_84-1491911889:315773..315857Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:315131..315260TCONS_00072810-exon-scaffold_84-1491911889:315131..315260Clytia hemisphaericaexon
TCONS_00072810-exon-scaffold_84-1491911889:314664..314825TCONS_00072810-exon-scaffold_84-1491911889:314664..314825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:314664..316145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1772	11.8747	5.70065	4.15047	19.4217	12.8518	8.42998	11.2744	8.88012	8.92179	12.3371	13.1007	12.3037	22.8055	12.4995	13.4139	12.3057	12.3426	11.6999	10.2894	12.4528	11.5959	10.0688	10.7407	7.54275	10.4342	10.7569	11.6514	8.18741	8.34167
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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