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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072808 ID=TCONS_00072808|Name=TCONS_00072808|organism=Clytia hemisphaerica|type=transcript|length=2240bpRun BLAST on NCBI protein sequence of TCONS_00072808-protein >TCONS_00072808-protein ID=TCONS_00072808-protein|Name=TCONS_00072808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp MAAVVGLQGASICERDTDGECMFVWVYPQISPDLKEVILNKCSILTEDHSRun BLAST on NCBI transcript from alignment at scaffold_84:288377..304014- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072808 ID=TCONS_00072808|Name=TCONS_00072808|organism=Clytia hemisphaerica|type=transcript|length=15638bp|location=Sequence derived from alignment at scaffold_84:288377..304014- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_84:288377..304014- >TCONS_00072808 ID=TCONS_00072808|Name=TCONS_00072808|organism=Clytia hemisphaerica|type=CDS|length=9504bp|location=Sequence derived from alignment at scaffold_84:288377..304014- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072808 vs. Swiss-Prot (Human)
Match: FA45A (Protein FAM45A OS=Homo sapiens GN=FAM45A PE=2 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 5.626e-82 Identity = 123/348 (35.34%), Postives = 215/348 (61.78%), Query Frame = 3
Query: 717 GASICERDTDGECMFVWVYPQISPDLKEVILNKCSILTEDHSETKFCFCQVKGTWYYILRTDISQAHAVKNVNDVFFVILAEDFNPELYQNLAECSTKDYLKGHSTTKVLQNFLTMYTKGYCLKDDDKKLVHTDFDKRKAYMETCIKEMITLFGMESILIYVAVLLKKRIAIYHPKLTTLHHICRSLPAFCIHRKDWNIVYPFLTLTGEKELEEIKNKRTYVAGFTNGEVENRPDLYDIYLQASDGEIVLNPQSKECFQMGKMHKEIAKFLLQASENEDMADEDIIKELTRRTKDIINNLR-----SLDGENPDDPHISLELLQSKNLTNVMQTFLFNLASAEGLVRL 1745
G + E+DT+GE ++VW YP + L+ ++L KC + E+ F F Q + TW+YI ++ + +K V V+ A+DFNPE Y + YLK S K++++++ + TKG C +++ + DFD RKAY+ IK++++ FGME+++++ A++LKKRI +YHPK+ + R+LPA HR+DW I++ ++ L + ELE ++ YVAGF + EV NRPDLYD+++ ++ EI + P +KE MGK+HKE+ + ++Q++E+ + ++ +I+++ +T++I NL S DGE ++LE L+ K + FL++LA+AE ++++
Sbjct: 14 GVGLIEKDTNGEVLWVWCYPSTTATLRNLLLRKCCLTDENKLLHPFVFGQYRRTWFYITTIEVPDSSILKKVTHFSIVLTAKDFNPEKYAAFTRILCRMYLKHGSPVKMMESYIAVLTKGICQSEENGSFLSKDFDARKAYLAGSIKDIVSQFGMETVILHTALMLKKRIVVYHPKIEAVQEFTRTLPALVWHRQDWTILHSYVHLNAD-ELEALQMCTGYVAGFVDLEVSNRPDLYDVFVNLAESEITIAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQDIALKTREIFTNLAPFSEVSADGEKRV---LNLEALKQKRFPPATENFLYHLAAAEQMLKI 357 The following BLAST results are available for this feature:
BLAST of TCONS_00072808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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