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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072768 ID=TCONS_00072768|Name=TCONS_00072768|organism=Clytia hemisphaerica|type=transcript|length=2557bpRun BLAST on NCBI protein sequence of TCONS_00072768-protein >TCONS_00072768-protein ID=TCONS_00072768-protein|Name=TCONS_00072768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp MAARFSVYALIVLRVLEGIALGVLFPSNHAIWGQWAPPLERSRLFSITAARun BLAST on NCBI transcript from alignment at scaffold_84:96686..116131+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072768 ID=TCONS_00072768|Name=TCONS_00072768|organism=Clytia hemisphaerica|type=transcript|length=19446bp|location=Sequence derived from alignment at scaffold_84:96686..116131+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_84:96686..116131+ >TCONS_00072768 ID=TCONS_00072768|Name=TCONS_00072768|organism=Clytia hemisphaerica|type=CDS|length=10185bp|location=Sequence derived from alignment at scaffold_84:96686..116131+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072768 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 3.173e-88 Identity = 152/370 (41.08%), Postives = 227/370 (61.35%), Query Frame = 3
Query: 666 GWLATRIGGTRIFGAALFFASVLTLLTPMAARFSVYALIVLRVLEGIALGVLFPSNHAIWGQWAPPLERSRLFSITAAGCPVGTILTMPMTGLLTKYGFDGGWASVFYVFGAVGLLWSFVWWLVIHPAPETHPTISQAEKNYIMASL---SNRKGEKAP-PVPWLKIITSIPVWATIVANFTADWGLYTILICIPKFFQKVLNFDIATTGFLVSLPYLIKAIVGPSGGIIADMMIMNG-FSVKNTRRLIFTIGCTTASIFIVGVGYAKSKAVAIGLLCTGVGITGLNATGYAVNILDIAPRFAGVIIGFSNVFGSMPGFISPMIVGYITTKNTAAEWQLVFWITXXXXXXXXXXXXLTVSGDRQPWNDPE 1760
G++A+R+ R+FGAA+ S L +L P AAR +I +R+L+G+ GV +P+ H IW +WAPPLERSRL + + G G ++ MP+ G+L +Y GW+SVFYV+G+ G++W W LV + +P HPTI+ E+ YI S+ +N G PW K TS+PV+A IVANF W Y +LI P +F++V F+I+ G L ++P+L+ I+ P GG IAD + S R+++ G + ++ VGY+ ++ VAI L VG +G +G+ VN LDIAPR+A +++G SN G++ G + P+IVG +T + EWQ VF I A V+ GV+F+A+ SG++QPW DPE
Sbjct: 143 GYIASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGILVQY---TGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPE 509 HSP 2 Score: 119.783 bits (299), Expect = 4.949e-28 Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 343 GFPKRYVLALMVFLGFSVLYALRVNLNVAIGAMCNNHTIYENGFYVNKVAEFDWDSKTQGMVLGSFYYGYIVLQIPGGWLATRIGGTRIFGAALFFASVLTLLTPTA 663
G P+RY++A+M LGF + + +R NL VAI M NN TI+ G + + A+F+WD +T GM+ GSF++GYI+ QIPGG++A+R+ R+FGAA+ S L +L P+A
Sbjct: 66 GLPRRYIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSA 172 The following BLAST results are available for this feature:
BLAST of TCONS_00072768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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