TCONS_00072767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072767
Unique NameTCONS_00072767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072767 ID=TCONS_00072767|Name=TCONS_00072767|organism=Clytia hemisphaerica|type=transcript|length=1507bp
GCCATCGATTCTTCACCGTCAGTCGGTctttgtgacgtcactttttcatc
tCTTGGCGACAACAACCAATTGAAAACGGAATGGGATGAGTTCTTCGGAC
CTACTGTCAATGCTTCAGTATTGGTCATCTTTAAGAAGAGCTTGGAGTCA
GGTGGCCTTCAGCATGAAGACGAACTAACGAAAGTTATTTGTGCTTGTTG
TAAGTTCTTACAAGAGGTGAACAATGAATCTATAGAAGAATTGACAAGTA
TGATCCAAAATGGTAGCTGGTGTTACAAATTGGCTGGATTTCAACTTCTA
TCAAAGAACATTACAAAATTAGAGGAGATGTGTTTCGACCTTGAACAAGA
CGAAAATCATGAAGAACAAAGATCATTTCCCAAAGATCTATTGGCCATAA
TGGAAGTTAACCGAGACACAACTGTCAATTCTTTAACCAATCAATGCGCT
TCAATCATCGAAccagccaatgaaattgaaGATACGGAATCACGTGGTGG
CAAAACTTCTTTGCTCGCTTACCTTTTATCATGGCAACTTATTTTGCAGA
TCTTCCAGACGTCGAGTTTGGATCAACGAGCAAAACTGGCGAATTTCTTG
CATCGTGGTCGACACGTGACGGACCTGGCAAcatgtttgttttgtatcat
gCCCAAACAAACTGAGAATAAAGCTATCGATACACGAGTATATGACTCCA
GTTTCAAAGAAATCCAGAAGATTGGGATCAAGCTGTTGATCAATGCAATG
CAATGTATTCCAGCGTTATTACGTCATTGGTTCAAAAATAACATAAACAG
GAATGAAACTATCCATATcgataaATTCGTATCCTCCGTCGTATCGCCGC
ACTTATTACGTAACGAATTCAGACGCTTGGATAATGCTTTCAAAACGTTT
GATAACATGGTGGTCAAAACACGCCCTGGGGCGCGTGAAATAGTGGCGGT
GTACAGCATCGAAGAGATTTCAATGGAGTTGGTAGTCAAGCTATCTTTGA
ATCATCCGTTGACGCCCGTTGTCGTTGACTGTGGAAAGAGAATCGGAGTA
TCGAATGCGTTGTGGAGACAATGGATGTTGCAATTGACCACTTTCCTCTC
GTTCCAAaatGGTACAATATTGGACGGTTTGACATTATGGAAACGTAACG
TGGACAAGAGGTTCGAGGGAGTTGAAGAATGTATGATTTGTTTCTCCATC
ATTCACGGAACCAATTATTCGCTTCCTACCATCGGTTGTAAAACTTGCAA
AAAGAAGTTCCATCCAGCTTGCTTGtacaAATGGTTCAGCACGAGTGGGA
AATCAACCTGTCCGTTGTGTAGAAATACGTTTTAGTTCAagatattttgt
attttataaatataagtGTAGGGTTGATTGTTTAGGATAAAAGTTAAATA
AATATAATAGATTTATACAAAATAATTGTTCTAACTCTAAAATTAGCGCT
ATATTCGTTTTAAGTTAAAAGATTTCAAGGCAGTGATTCAAAAACTGGAT
TGATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_84:56231..70315+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072767 ID=TCONS_00072767|Name=TCONS_00072767|organism=Clytia hemisphaerica|type=transcript|length=14085bp|location=Sequence derived from alignment at scaffold_84:56231..70315+ (Clytia hemisphaerica)
GCCATCGATTCTTCACCGTCAGTCGGTctttgtgacgtcactttttcatc
tCTTGGCGACAACAACCAATTGAAAACGGAATGGGATGAGTTCTTCGGAC
CTACNTCCAAATGTGTGCtgtttcaggccttaaaacaggttttttattat
ttaatagtgtttttggccaaaaatatacttcatccgccaaatttcCCACT
AAAGTTTCTTCCTATTGCCCAATAATTTTGACCCCAGAGTCGTTTTaaat
tcaaagttttatttatctttttccCACTATAGAATTGTGAAGATGAAGAG
GACTTTACAATGGTGAAAAAACGTTCGTTGTTCGCTACAAAATCTCTTGA
ACTCTTCTATATGGTCGCTTCTCTTTTCTCACCCATATCAGATGGTAAGT
GCAATCATGctatatgaaaaatatattccatTGGTTCTAAATTCAAGTaa
tcttaggttccaaataaacgcccctcccccccgcttgttaatatttcgaa
aattttccaacccacCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggaatct
tatttgttcgaattatagaaagattcgaattagagaaagtattTTCAGTG
AATCTCTTCTTCACGGGGACTGGAAATGAGTTCGGATTATagaagattcg
aataatagaagttcgagtaAGTGAGAGTTTATCGGACGTCATCTCTGCAT
CTTTCTCTTAGATGCCATCGATTCTTCACCGTCAGTCGGTctttgtgacg
tcactttttcatctCTTGGCGACAACAACCAATTGAAAACGGAATGGGAT
GAGTTCTTCGGACCTACTGTCAATGCTTCAGTATTGGTCATCTTTAAGAA
GAGCTTGGAGTCAGGTAAGCAGCGCACTATTCGTTCTCCCTTGCTTATCA
GATCCCAAATTCAGGTTATTTTCAGTTTGTAAAAGTAACGTAAATTTCGC
CAATAAGTTAAGAAGAAAGAATTTGTATTACGTAAGCAATCAATAACCTt
ttcgattcgaatgttttcttcgATAATAAATGGTGGTGACGGGTGATATG
CCAGACATCGTGGTATGTGGCGGCATTCATCCCGTTATACTTTCGCTACA
AGCTATATGCTCTCTCTTGCGTAGTTCAAGTGTTATATAATCATAATGGC
GGATCTTCGCTAAGTTACATAACTTATAACTGAAAACATAACTACCAAAA
CATGAAAGACCTCTATTGTcaccctttattttctttactAGGTGGCCTTC
AGCATGAAGACGAACTAACGAAAGTTATTTGTGCTTGTTGTAAGTTCTTA
CAAGAGGTGAACAATGAATCTATAGAAGAATTGACAAGTATGATCCAAAA
TGGTAGCTGGTGTTACAAATTGGCTGGATTTCAACTTCTATCAAAGTGAG
TTTTGCTGTTGTCTGTTCTCAATTTCAAAATGCGTTTCTTCAGTAGCAAC
AAAAACGATAAATGAAGATAAAATCGCGTTGAAAGTCATTtattttaacc
ctttccgtgccgatgtcggcatatgccgacatgagcattttttatttcct
tGTCATTGTtgggatttgccgacatgagcactttccatttctttgccgca
aaatttaacacttctacaaagattttgtattagatggtttgaaatgaaaa
aaatgaatagttaaaaacttttctaaattgaaaaataactattctacaat
gttcatatcaaaattatagtccttggctgatacttcatagattattcaga
aaatgaagtgaaaatcgCTACCTTTTGCATGGGCAAATAGGTCGAGGGTG
TAAAAAAATAGgccggcaaataggtcgaaGGTGTAAAAAAATGCCACGGT
AGTTAAAGGGTTAACAAATTCGAGTAATCTAAGCTTATTTAAGAAATCCt
tttttcctcgtttttagGAACATTACAAAATTAGAGGAGATGTGTTTCGA
CCTTGAACAAGACGAAAATCATGAAGAACAAAGGTAAAGAAATTTTCTAA
TGGAATCATGAGACTGCATCCTCCATGAAATTAGCGAGTTTTGAGGACGG
TGGATTGGCATTAGCTATTCCGAGGAAAGGTACaagttactctcgggtac
ctaataagcgtcccccctccccgctaattaatttttgaaaaattttccac
ctaggacatttttattccaatccaatcaaatatttttttgaaagttccct
cttttgccctaattctgctgtattaacCTCCCTTTCAAAAACCCCCCAAC
CCGCTCCCTCCcaccgcttattaagttttgagaattcTTCCACCCACCTA
AGtacttattccaaaccccccccccccgtttattaggtacccgagagtaa
tcgTCTGACACGGAGCCTGCAACGAGGACTTTGTGGGCGAAGAATGACGG
GTTTGTGGGACAAATGAACCCAAGTTGTGAAagcattttcttttcttctc
taGATCATTTCCCAAAGATCTATTGGCCATAATGGAAGTTAACCGAGACA
CAACTGTCAATTCTTTAACCAATCAATGCGCTTCAATCATCGAAccagcc
aatgaaattgaaGATACGGAATCACGTGGTGGCAAAACTTCTTTGCTCGC
TTACCTTTTATCATGGCAACTTATTTTGCAGATCTTCCAGACGTCGAGTT
TGGATCAACGAGCAAAACTGGCGAATTTCTTGCATCGTGGTCGACACGTG
ACGGACCTGGCAAcatgtttgttttgtatcatgCCCAAACAAACTGAGAA
TAAAGCTATCGATACACGAGGTTAGTATTTTTTCATAGTTAACACCCAAT
ACTTTAAATGCGATAACTTATGAAGGGTCATCGGCGACTTCGGACACAAG
CTCATAGGTAATAAAGGATGAACAGATTATCGTCGTTGTCAACAATTGTC
GgcccttaaaatggcttaattGTTACATATCTCTCTATTCGTTTAGAATT
TCGTCCTCGAGGAGATCGATTTTTCATCTGATTGTCTCGACTTCTGTAGT
GCTTAAGGCTATACACAATAAACAGTTCTAGGCTTTCAGATTATAAGTAG
CTTTACGATCGTAGTGAAGGATGACATGACGTAGTATGTAGTGCTTTTGT
TATCGGTTCAATTATTCGCTACAAATTTCCACTAGGCCTGTATTTCGGAA
ATGTAATCGATCGTCACAAATAAAACAGAAAAGATTTCACTAATAAACAA
ATGTTGCTATGAGTCGCCTTGCCTGCAGTCAACGTGGAGCGTTTTTGATA
GACTGGTTGGTGCGATTACTCCACTGACTTCAGCTCCATCAcaataaaaa
agcaaagaagaCTCAAGTTCTCTCGTCTACTTCAGGTCACCTAAATTAAA
TTGAACATGGCTCAATATGTATCTCAATGTCAAGTTTTGTGATTAATCAT
ATAGACATATAGACATGTATGTTGGGCGCCACCAAGAAGAAAGTCTCCTT
CGTCTCGTTTGTGGTTTTCCCATGGGATCAATATATAGAAAGATGTGGCC
AGCCAGTCGCCATTATGTATAGAAAAAATGTAATTAGGTACAGTTATGAT
AAGGATATGGGAAATCTAATGAAGCTTTAATGAATTTTGGCTTCTCctat
aaataataataatacggcgATTTTAGCATCTAGTTAGAACATCCGGCTAC
GGTGTACGTAAGGTACTCTGTACCAGaatgtatctcacgtttatcgcttc
gtagtacagtacggcaatgaattttgaaataagccgtagatactcattct
gtgtacagacaatacGTAAGGTTCAACCCCAAGTTGGGCcacaccaaaga
ttcccaaaatggtgcttgatgcctctctgcttgtgTTAAGCAAATATTAA
GACGGATCGAGGGTGGAGAAATCCAGCAAGAGGTGTTACAACCTCCTTAA
CCCTCGAGAACACAGCTAAGGGAAAGGATCGCTCTCAACTTCGATCGCTT
ACTTACTTGCGGTAGTATACATTTGAATGTTTTCCTTGGACGCAGACTCA
TCTACAAACcctaatttaaaaatttagaattttgctagctaagcaaaaaa
ataatgagtaaTGAAAGGTCTTTGTTTTAAAACCATAACTGGCAAATCAA
AAGACCACACCCATTAAATAGATGgaaatttgatgtttcgtttatgCGAG
TCATGAACTCAGACCTCAAGAATGGCATTAAGCGAATCATTGAATTTTTG
CTGTATCAGTTTTAGCTACGTCTAACCACTAACTTTATTGCTTTAACCAT
AACATTTCAGTTATAGTTTCAAAGGCCTTTATTTCCTGGACTAATTTTAT
CCGCATAATGCCATGACTCAGCTTGAAATGTAGGTTATTTTTTCTCGAGT
ATTTTATCCTTTGGCAATATTTAGCTTAACTGACTGATAAGGTTATTTCT
AAACTTAGTCTATCCAGCAATCTATCGTATAATTGATGATCAAAGTTGCG
TTGGGAAATATTAATAGATAATATTGGAATTGTGTGACTTGGTTGCTTAA
TTAATAATTGCGCGATTCAGCTATGTCTGCTATGTACTCCTACTAAAGGT
CCAATCCATGATAACTGAAGTAGTTTTAGTTCTCAAGCTTCTGATtattt
ggaaatattttcaaaaaccctTGGAAAATTTGCCATTGGTCTTGTCTGAT
AGAGTTACGAGTCAAGGTTACTTTCAATACAAAGGGCTTATCATAGCCAG
TTGGCAAACAAGTTGTTCCAACACTAACCCTCCTGTGCTGTTATGGACGT
TAGATCAATGTTATTTGGACGTTTTTTTATCTCGACCCTTTGTACTTTGG
CAACCTTCACAGTAGTTATTTGTCTAATTGGTTGAAAACAAAGCCCAATT
GAACTCTCCATCATTTATTTCACAAAGTTCTAGATGATGTCATCAACAAt
cttattgatttgattttaagcTGATCCTATTTTGATGTGCAACACACTAA
TTAAACTGAAAGATAAAGACCTATTTAAAGGCTTTAAATATTACCTCCTA
AAGCGCTTCATGAAAACACTCATTTATCAACCCAGACTAGATAGGCACTG
CCTCGTTGTATTGTAAATTGGTTTCCAGGGCaacaaaaaaatgcgataaa
TTTACTTAGATAATTTACTGACCGTGACGTACATTTCTAATTTTTGACGT
CTGAGGAATAATTCAAGCTTTTCATGAGACGAATTAATTGTTCTGTGGAG
TACAGGCGAAGTGTTGAAAATATCCTGCTTTTGAAAGCGTATCGCTCAGA
ATTCGCCTTTTGCAAGATAAGAGTCTAGACTAAACTCCTACCAACTTGTT
CCTTTATGAGAGAAACATATTTTAGACGAAAAGGTCTTTAGTCTTAGCTT
CCGATGTATCCGCCTAGGGACTACCTTTTTCGTTGGTATTAAATGAAATC
TCCTGTCCTtggggaaatttcaaaaacttttattcgCGAAATACTTCCTA
GACTATTAAAAATGTTAGAATTGTTCAGCGATTCCAttgttaaatgattt
tttttctgcatTTCACTTGTCTAATTCTTTGCTCAGAGAAAGTTGGCTAT
TAGATTTTTGTCTGGGAATTTTCCTGTCGGGACCTTCAGTTTCTTTCTTT
CTTCACTGCATCTCCTTGTATGGTATGAACTgcataaaatttgaaatcaa
atgCGTCACTTATTAAAGCCTATTAgctgtataataataatatttgaaAG
ATAACGTCATATTCATTTTATCAAATCAATAATGGCGCAGCAGCAATGTA
GCTTGATTCTGGATTCGAAAGCCAAGTGATTAGCATTAGTTTGTACGTGA
TTTCATTCTATTTTCTGCTGTTTGAATGTCTCCACATGAGCATGTCCCTC
TCCCCTGTTGCTTCCTTTTATTAGAACTCAACTTTAAAAAGATGAGGCCT
CATTTGGTCTGTCGAGAAAATCGAATCCTAAATTTTTCGTTCATAATACA
ATCAACGCCATCCAATCAAATCTATTCTTGATTAAAATTGGGAGAAACTT
TTCATTGTGTTATAACCAGGTTGACTCTGGGTATAGCTCAAAAAAAGGAC
TAGGTtgagctgaaatttttttgttcttagaaaaaacCAAAGGTAACAAG
AAAGAAACAGTGGTTGATTTTCAATGCAATGTGCCTGTGGTCAGTCATAA
CTTGATACATTTTACAACAAAGTTTTGTTGCGAACGATACTTTAGCGAAA
GAAATCTATTTGAACAACGTCATTCtttcattaaaaattgtttcgtCTAC
TATTTTTAAGCGACCATAAGAATTTCACTAACTCTTCTTAATAGCAGGAA
AAACAAAGGCTTGAGTCATACTTTAAGCATTAATGTACTAATGCACTAAT
GTGGGGCATCTCTGTATGAAAATCTGACTCAGTTCACATGCAAAAACTAT
CGAATTATAGGATTGGAAATTGACCACTTTCACACCTGGAAAATTGCTTG
GCGCCTCTTCCAGCCTTGGAAAAATGCTTTATTCACAcaagagaaaataa
ttttccagCCTCGATATAATTCCTGGGAAATGCCCATTTTCGGGGTGGGT
TTTCAAAtctctgattttttgaaaaataaatcccaccccgaaaatgacca
ttttacaaagatttataagcccgaagggctagatgtcgggctttaagcca
tcgcaggcaaaaaaaaattgaatatcggaaaaaatcttgttgctattgtt
ttcaaaaacccaCGAAGCTTCGATTTGTCaagtgctgaaattctattgta
atgtcacgtgacatGTCATGTCACCTCGACACatgtttcagcaaaagcac
tctatctagcccttcgggcttttataGATCTATGCATTTTACACCCCAAG
AAAGCTCGGGTCTAGATAATGGCCATTTTCGGGGTGGGAAAGTTTGCATA
AAAATTTTCCCAGGGTTGTAAAACGGCCAAAATCATCCCCGAAATATAAT
CGAAATATGTAATCGTTAAAAAATCTCAGGGCTAAAAAAAATCCCAACCC
GAAAATGGCCATTTCAAGACatgggattttttcctgtgtaatctttttga
aaattaatggCAAGAAAAATCAGACCTGAATTTGGCTGTTTTCCAACCCG
GAAAATTACCACCCTTTAAAGTAATCAAATTAGGGGTGGATTTTTCAAAT
cactaatttttttgaaaataattggcAACACCTGAATTTAGCTGTTTTCC
AGCCTNTTCAAATcactaatttttttgaaattaattggCAACACCTGAAT
TTAGCTGTTTTCCAGCCTGGAAAATTTCCACctggaaaattatgaaattc
cAGACAAGAGTTTTTGTGTTGAAAGGCtggaaaagaacaattttcacaCC
CGTTTTATAAAATTCCAGTCTTTATAGAAAATCAAGGTAAAAAAATTCCA
GGGTAGAAATAAATTCCCAcctgaaaatagtatttttccAGCCATGGAAT
TCGAACATTTTTACCTGAAACGTTTcaggtggcttcagcaaaattaaata
tgaaatcgaactacactgtaagggtcagaaacgttcggtaaaatgcactg
taagggtaccttttcactgctcaagtGCTGCACTGTAGCGgtttgaaaac
cattttttttggcggcacatgccgtcaCTTAGAAATTGAGTGTCCCCACT
CCTCGGGTTAGATGCCTGAAAACCATACTTGTCTCTATTTTCAGTATATG
ACTCCAGTTTCAAAGAAATCCAGAAGATTGGGATCAAGCTGTTGATCAAT
GCAATGCAATGTATTCCAGCGTTATTACGTCATTGGTTCAAAAATAACAT
AAACAGGAATGAAACTATCCATATcgataagtaagtaagtttttGAGTCT
CATTTCCATGTCTTGTAAACATAATTTTAAACCTCTTGAACTTGCCAAAA
AAACAACTCTTTTTAGGTGataagtttttgatttgattgattgattgatt
gattggaaTGTTTTCACAGGACAGATTGTCAAAATATTCTCATCTTATTT
TTCTCTCCATAAaaaaaacgctaaaaaagcCTTGGAGTGCAACAAAATGA
AGCGAACTTTATGTGTCTCCGGAACTGAATTGACGTCAAACTCTCACGGG
TAAATCAAAACTATGTCAAGAATGTTTGTGAAAGAAAAGTGTTGAACCAC
AATTTTGTCGTACGTTCTGTGGCCTGTGACTTTTAATTTTATCTCGAACA
TTTGAGTAAAATTTAGTAAATTTTGCTCAAGccgcattttgaatttcaac
tttttcacattttctaACAAGAGTCATAAGTCCGGTTTTAAACCTTTCTA
TTATTATATTGCAGAATTCAGGGTTGTAGCAGTCATGCAATACTCTTTAC
AAATCGATTCTGCTGTTTTCTCACAAGCAGCTCTGTAAATAAAACTATAG
TATTTAATACGACCAAAACAGGTTTCTTTGTACTGCTAGCTTGCACTTGT
TTATGTATTGAGTGATCATATTTTTGTTTCGTGAAAATGTCGGTGGGCTG
TCGAGGCTTCCCCTAATTTATATTCAGATTATTTATTTATCATCTTGTTT
ATACAAGGCTCGTCAGTCTTTACTTGATTTTCCCGACCCCGTTtagttga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgattgattgattgg
ttgatgaTTGATCGATTGATCGATTGATCGATTGAACCCCAACTTTTCAA
AAACGTTTTTCGGCTGTCAAGAAAAATGCCCTTTCTTctcgttttatttt
gattgaagTCAGAAGTAAAATATTCACGGTTAAGGTCCCGActagaaata
tatttttctttttttctacgtTTTCTAGATTCGTATCCTCCGTCGTATCG
CCGCACTTATTACGTAACGAATTCAGACGCTTGGATAATGCTTTCAAAAC
GTTTGATAACATGGTGGTCAAAACACGCCCTGGGGCGCGTGAAATAGTGG
CGGTGTACAGCATCGAAGAGATTTCAATGGAGTTGGTAGTCAAGCTATCT
TTGAATCATCCGTTGACGCCCGTTGTCGTTGACTGTGGAAAGAGAATCGG
AGTATCGAATGCGTTGTGGAGACAATGGATGTTGCAATTGACCACTTTCC
TCTCGTTCCAAGTAAGTTTTCAGTTGCATAGTGCGGAAAGAGGTCTGATC
TCCTCCTTCTTGGCATctcccaacctttaaaaatgcctattNACAGTTGC
TTAGTGCGGAAAGAGGTCTGATctcccccttcttggcatcccccaacctt
taaaaatgcctattgCGCAAggattttttggacaaaaatagctaataaaa
atatgtgaaatatctttagagagagaaagcgaaataatcttctttttgac
tcagactactataacagaaaacttcctttcatgaagaACACATTTCATAA
CATATATGTAAGCCCCTTCTTAAACTATCCCCCTGCTTTGctatcccccc
ccccctttttcatgaaaatttctgatgccccttcttcatttttttggaag
gtgtTATCCCAGAGGGGGTCCGAACTATGAGTTGACTTTCgctaattcga
tttttaagaGACCAAGGATTTTCTTCGGATTAGaggaagattcgaattac
agagagtatgcTTTATTACTTTGTAGCTGAATGGATCAATATTCAAGTTC
gatttatagaaagatttgaatacatgttttttttgtaagcatacaaaaat
cataaagttggctcagagatgcttagatcgagagatttacaaagctgaaa
aatgctttgagGGATGCTTGTAtcctaagcaaaattttagagaaattttg
AGAATCTGTAAAATTCCagtcaaaaagaaataaattctGACTATGAAGGC
TCAAGGTAATGTTTAGCATATGctgaaatttttgccatatatgagcctag
ttatgcttataaagaaaaaaacatgtagtataGGCTCGAATTAGaccgga
aaactggttttttggcattttctcgacaTTTTACCAttaatattttctga
ttttttgctcaaagatgcgtattaacaatgcccaaaacatggccgagtcc
gatttttgagaaaaaattttttccggccgaaaatacccaaaatatgccgg
aaatcgacgtttttctggattttcattggactctttccttataattggtt
gtttttttaattcaagaacattattaatagcaatgcccaccatcaagcat
gtttcaattttcaataaaattgatttttgaagccggaactatttaaaaat
cgccggaacaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgattt
ttttgcagaaagatgcgtattcgcaatgctcaaaacatgaccgagttcga
tttttgagaaaaaaaattttccggccaaaaatgccggaaatttccgtttt
tgcagattttcattggattttttcgatttatgtctttgtttttttttcaa
acaaaaacatctgattttggtacaggaactttctaaaaatcgccagaaca
gccgagaatcgcctgatttcttgaatttctcgagttgttcttgtattatt
ctggattttcatactattgttgtcatttttcaattgtcttattaaatcaa
tcttcaggtaggtccattcagcatgtagcttgttatCATCTTGCTTCTTG
GTTTTtgccttttaaaaaatttgtttaaatcAAATAAGACATAGTTTAGG
AATTGGTGGGAACGGGAATGCAGTGCTAGGATAAGACGAACGTTTATTAG
CCACCTGTGGGTATGTGCACAAAAGTAACAATTATGAATGGGTGAtctta
actttaaaaaaaacttaaaatatagttgactctctttaattcgattttca
ggTGGCCAAAAATCTTCTTCGAATAGGCTCTTCCAGAATACTTCCGTACa
tgggggatggaggatatattgtccggggggggtagcgaaaaatcatcaaa
atttgtcttgtccggggggtcaactgatgtttgtccgggggggggccaaa
agtcactttgtccgggggggtaaatcactgaaaattgttatatcctccac
acccatattcaatttttttctggaaaagcccaattagGGAAAGGTtagaa
ttacagagagtaattgaGACCACTTTTCAGCTGAGAGGACCAGTATCTTA
gttgttcgaattacaaaaagattcaAATGATAGAGGTTTGAATTATCgtt
ttttttacttcagaatGGTACAATATTGGACGGTTTGACATTATGGAAAC
GTAACGTGGACAAGAGGTTCGAGGGAGTTGAAGAATGTATGATTTGTTTC
TCCATCATTCACGGAACCAATTATTCGCTTCCTACCATCGGTTGTAAAAC
TTGCAAAAAGAAGTTCCATCCAGCTTGCTTGGTAAGTCTTACTTCCCGCG
GTGTACTAAAGTATATCTCAATACTGCAGTGGAGACAAGATaggttgtaa
cttttgatagaatttgaataaaaaaagcggttttttgcttATTGGAAAGA
TGATAAGGAGTGGAAtgttataaaagaaataaagaagtaaaaaaaatttt
cagtagaatttttcaatgattttcattttcgtattagtttttcatcaaaa
aatttatacTTTGAAAATGGGGTTATTACAGATCAGTCTTTCAAAAAGTT
GTCTtttccttcttcatttttcatcttcattctttttttttttcatcttg
atttttcCATTCTCATTTGGTTTTATTCCActcttaaatatttttcaaca
agCACTAAGCCGCTTTctaatagcgcaccgcgctgaatctaaaaatagat
tttatttttgacataatcattactctcgatgtgtttgtacgagctcctgg
gtgtttgagaaaaaattttgtcatgtactacctgtgtactataattgggg
tgttgggtccGAAATCGATTTTGacttttactacctgtgtaccaaaatag
gggcgttgggtccaaaatcgatgttaACAGTGTGGAATcaaaaaggttca
gaaattatctgctaaaataaaaatgtaaagttgttctttTATAAATCgat
caagccaagtttgtccaagatcattcttccaaacttcttggaatgaattg
aaatcctacCAGATCCCACTGAAATGAAGGTTTATCGAGTCAANNNNNNN
NNNNNNNNNNNttgaattcaaacattcaacattCTTACAttagaggtgcc
aactctcacgcattgggtgtgagactcatgcatttccacatggtctcacg
taatttttgaaaagttggatTTCTCacacattttggatttttgagaaaat
ttttcctgtttttccgattttttgaaaaaagttttcccNGCATcttggat
ttttgagaaaaattttcctgttattccgatttttggaaaaaagttttccc
aattcCCGATTTaccaattttccgaaaaaagttttcccgatttcccgatt
ttcggaaaaaatgttaacccgattttccgattttctgaaaaaagtttatt
tattttctgGATTTTTCCAGGTAGTACCCGGTAGTAAatggggggtatgg
ggtggttttggtttTTTCCAGGTACAACCCGGTAGTAAATAGGGGGGTAT
AGggtggttttgggatttttccatgtagtatggtgtacttcaggggtggg
tgggtgtcaagttttgaaaaataccttgtacTACACATACATGCCGTCTT
CTAAtacactgaccccccctggTTAAATTTCATTCTTAATCAACATAATT
AaccttgtttttatcttttgCGAAATTATCATCTAGTCTTATAAGTACTC
AATAGATAACTCCAGGCTTTAAGGCCGTCCTCTTGAAGATATGAAAATTA
GCTCAAacgaaggaagacaaaatgtaaacaaagataatatttttcttttt
tagtacaAATGGTTCAGCACGAGTGGGAAATCAACCTGTCCGTTGTGTAG
AAATACGTTTTAGTTCAagatattttgtattttataaatataagtGTAGG
GTTGATTGTTTAGGATAAAAGTTAAATAAATATAATAGATTTATACAAAA
TAATTGTTCTAACTCTAAAATTAGCGCTATATTCGTTTTAAGTTAAAAGA
TTTCAAGGCAGTGATTCAAAAACTGGATTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045175XLOC_045175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072767-exon-scaffold_84-1491911889:56231..56334TCONS_00072767-exon-scaffold_84-1491911889:56231..56334Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:56231..56334TCONS_00072767-exon-scaffold_84-1510915933:56231..56334Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:56231..56334TCONS_00072767-exon-scaffold_84-1575043694:56231..56334Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:57448..57494TCONS_00072767-exon-scaffold_84-1491911889:57448..57494Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:57448..57494TCONS_00072767-exon-scaffold_84-1510915933:57448..57494Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:57448..57494TCONS_00072767-exon-scaffold_84-1575043694:57448..57494Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:57872..58025TCONS_00072767-exon-scaffold_84-1491911889:57872..58025Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:57872..58025TCONS_00072767-exon-scaffold_84-1510915933:57872..58025Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:57872..58025TCONS_00072767-exon-scaffold_84-1575043694:57872..58025Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:58548..58613TCONS_00072767-exon-scaffold_84-1491911889:58548..58613Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:58548..58613TCONS_00072767-exon-scaffold_84-1510915933:58548..58613Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:58548..58613TCONS_00072767-exon-scaffold_84-1575043694:58548..58613Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:59084..59400TCONS_00072767-exon-scaffold_84-1491911889:59084..59400Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:59084..59400TCONS_00072767-exon-scaffold_84-1510915933:59084..59400Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:59084..59400TCONS_00072767-exon-scaffold_84-1575043694:59084..59400Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:64325..64460TCONS_00072767-exon-scaffold_84-1491911889:64325..64460Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:64325..64460TCONS_00072767-exon-scaffold_84-1510915933:64325..64460Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:64325..64460TCONS_00072767-exon-scaffold_84-1575043694:64325..64460Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:65509..65791TCONS_00072767-exon-scaffold_84-1491911889:65509..65791Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:65509..65791TCONS_00072767-exon-scaffold_84-1510915933:65509..65791Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:65509..65791TCONS_00072767-exon-scaffold_84-1575043694:65509..65791Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:68394..68561TCONS_00072767-exon-scaffold_84-1491911889:68394..68561Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:68394..68561TCONS_00072767-exon-scaffold_84-1510915933:68394..68561Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:68394..68561TCONS_00072767-exon-scaffold_84-1575043694:68394..68561Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1491911889:70084..70315TCONS_00072767-exon-scaffold_84-1491911889:70084..70315Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1510915933:70084..70315TCONS_00072767-exon-scaffold_84-1510915933:70084..70315Clytia hemisphaericaexon
TCONS_00072767-exon-scaffold_84-1575043694:70084..70315TCONS_00072767-exon-scaffold_84-1575043694:70084..70315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:56231..70315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2072	11.5484	3.9813	3.52037	11.1941	7.40003	7.79074	7.91365	7.85003	12.6068	12.3531	7.52651	8.79467	8.07625	9.29234	11.3944	8.90157	9.99575	7.11911	7.276	9.07567	9.67068	18.3978	14.6077	10.1582	14.7986	5.60433	6.1491	13.4253	11.2748
Blast
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BLAST of TCONS_00072767 vs. Swiss-Prot (Human)
Match: LTN1 (E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1 SV=6)

HSP 1 Score: 262.307 bits (669), Expect = 1.309e-75
Identity = 141/352 (40.06%), Postives = 204/352 (57.95%), Query Frame = 1 
Query:  349 DENHEEQRSFPKDLLAIMEVNRDTTVNSLTNQCASI-----IEPANEIEDTESRGGKTSLLAYLLSWQLILQIFQTSSLDQRAKLANFLHRGRHVTDLATCLFCIMPKQT------------ENKAIDTRVYDSSFKE-------IQKIGIKLLINAMQCIPALLRHWFKNNINRNETIHIDKFVSSVVSPHLLRNEFRRLDNAFKTFDNMVVKTRPGAREIVAVYSIEEISMELVVKLSLNHPLTPVVVDCGKRIGVSNALWRQWMLQLTTFLSFQNGTILDGLTLWKRNVDKRFEGVEECMICFSIIHGTNYSLPTIGCKTCKKKFHPACLYKWFSTSGKSTCPLCRNTF 1332
            DE  E   S P  L++++ +  D   N L   C  +     I+P +E            +L YLL+W+LIL  F+ +S   RA  + +L + + +  L   LF +MP+              + K   T     S +E       I  +   +    ++ +PA++R W+ ++  R   I +D+F S  VS  L   E   +  + + F+ M VK R   RE++A Y+IE+I +EL+++L  N+PL  ++V+ GKR+GV+   WR WMLQL+T+L+ QNG+I++GL LWK NVDKRFEGVE+CMICFS+IHG NYSLP   C+TCKKKFH ACLYKWF++S KSTCPLCR TF
Sbjct: 1425 DEEEEPALSPPAALMSLLSIQEDLLENVLG--CIPVGQIVTIKPLSE--------DFCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETAVEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNI-VDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765
The following BLAST results are available for this feature:
BLAST of TCONS_00072767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LTN11.309e-7540.06E3 ubiquitin-protein ligase listerin OS=Homo sapie... [more]
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