TCONS_00072758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072758
Unique NameTCONS_00072758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072758 ID=TCONS_00072758|Name=TCONS_00072758|organism=Clytia hemisphaerica|type=transcript|length=888bp
NNTCATTAAATTAACTAAGTGAAAAAAGCaattaaatgaataaataatta
aaagtaATTATCCTAGAGTGACACATTGTTGacaaaaatgaactttaaaA
CAAAGGACACTCCACATGAGAATTGAGAAACTGATGTGTCACAAGGGACT
GAatgaaagaaaagaacaaaggaaaacaAGTGAGACTCAATGAAAActgt
gaaataaattttttggtttttctaattttataatttttatggaAACATAT
TCAACAATACCAANNNNNNAAGCAGCGGCGGCGGTGAGTAGAGGGAGGCG
GTCGTAATTGAACACCGCCTTCAAACAACCACCCTCGTCCAAAATATGTT
AAGCTTCGAAACATGGCGGAGCTTAAAAGAGGCGcgaaaaaacataaaca
aatatggcAGAGTTCAATATTCGATTCACATCATAACCATAATGCCAAGT
TTTAGAGAGATTAGAGAAGCTCTTTTATTTGGTTACTATGATAATATTTT
AGATGATCAagaatttttgttgttgtatgACTTACATAGATCAAGAAACC
CAGATTTTCCATACTGGAGACATGCTGAATTTGACTTGGATAAGCTAAAT
GAAGATGAATGTATTGCTAACTTCAGGTTCAAGAAAAATGacatttatat
tttgaaagaacTTTTTCAAATACCAGATGAAGTAGTTTGCTATAACAGAT
CAAAACTCGATGGTATTGAAGCGTTGTGTATTTTTTTGGGACGATATGCA
TATCCAGGATAATCCAGTAAGATATGGATCCATGATACCAATTTTTGGAA
GGTCAGTTCCTGAGTTGTGCATGACTAATTATAACATTTTAAACCATATT
CATAATAACTATGGCAGACTTTTATCAGGATTTAATCA
Run BLAST on NCBI

protein sequence of TCONS_00072758-protein

>TCONS_00072758-protein ID=TCONS_00072758-protein|Name=TCONS_00072758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MLSFETWRSLKEARKNINKYGRVQYSIHIITIMPSFREIREALLFGYYDN
ILDDQEFLLLYDLHRSRNPDFPYWRHAEFDLDKLNEDECIANFRFKKNDI
YILKELFQIPDEVVCYNRSKLDGIEALCIFLGRYAYPG
Run BLAST on NCBI

transcript from alignment at scaffold_83:23810..24697

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072758 ID=TCONS_00072758|Name=TCONS_00072758|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at scaffold_83:23810..24697 (Clytia hemisphaerica)
TGATTAAATCCTGATAAAAGTCTGCCATAGTTATTATGAATATGGTTTAA AATGTTATAATTAGTCATGCACAACTCAGGAACTGACCTTCCAAAAATTG GTATCATGGATCCATATCTTACTGGATTATCCTGGATATGCATATCGTCC CAAAAAAATACACAACGCTTCAATACCATCGAGTTTTGATCTGTTATAGC AAACTACTTCATCTGGTATTTGAAAAAgttctttcaaaatataaatgtCA TTTTTCTTGAACCTGAAGTTAGCAATACATTCATCTTCATTTAGCTTATC CAAGTCAAATTCAGCATGTCTCCAGTATGGAAAATCTGGGTTTCTTGATC TATGTAAGTcatacaacaacaaaaattctTGATCATCTAAAATATTATCA TAGTAACCAAATAAAAGAGCTTCTCTAATCTCTCTAAAACTTGGCATTAT GGTTATGATGTGAATCGAATATTGAACTCTgccatatttgtttatgtttt ttcgCGCCTCTTTTAAGCTCCGCCATGTTTCGAAGCTTAACATATTTTGG ACGAGGGTGGTTGTTTGAAGGCGGTGTTCAATTACGACCGCCTCCCTCTA CTCACCGCCGCCGCTGCTTNNNNNNTTGGTATTGTTGAATATGTTtccat aaaaattataaaattagaaaaaccaaaaaatttatttcacagTTTTCATT GAGTCTCACTtgttttcctttgttcttttctttcatTCAGTCCCTTGTGA CACATCAGTTTCTCAATTCTCATGTGGAGTGTCCTTTGTtttaaagttca tttttgtCAACAATGTGTCACTCTAGGATAATtacttttaattatttatt catttaattGCTTTTTTCACTTAGTTAATTTAATGANN

Coding sequence (CDS) from alignment at scaffold_83:23810..24697

>TCONS_00072758 ID=TCONS_00072758|Name=TCONS_00072758|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_83:23810..24697 (Clytia hemisphaerica)
TTATCCTGGATATGCATATCGTCCCAAAAAAATACACAACGCTTCAATAC
CATCGAGTTTTGATCTGTTATAGCAAACTACTTCATCTGGTATTTGAAAA
AgttctttcaaaatataaatgtCATTTTTCTTGAACCTGAAGTTAGCAAT
ACATTCATCTTCATTTAGCTTATCCAAGTCAAATTCAGCATGTCTCCAGT
ATGGAAAATCTGGGTTTCTTGATCTATGTAAGTcatacaacaacaaaaat
tctTGATCATCTAAAATATTATCATAGTAACCAAATAAAAGAGCTTCTCT
AATCTCTCTAAAACTTGGCATTATGGTTATGATGTGAATCGAATATTGAA
CTCTgccatatttgtttatgttttttcgCGCCTCTTTTAAGCTCCGCCAT
GTTTCGAAGCTTAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045168XLOC_045168Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072758-proteinTCONS_00072758-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072758-exon-scaffold_83-1491911889:23810..24697TCONS_00072758-exon-scaffold_83-1491911889:23810..24697Clytia hemisphaericaexon
TCONS_00072758-exon-scaffold_83-1510915933:23810..24697TCONS_00072758-exon-scaffold_83-1510915933:23810..24697Clytia hemisphaericaexon
TCONS_00072758-exon-scaffold_83-1575043694:23810..24697TCONS_00072758-exon-scaffold_83-1575043694:23810..24697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_83supercontigscaffold_83:23810..24697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.969848 0.847316 0.96767 0.885237 0.51178 0.595636 0.288088 1.02148 0.552487 0.708998 1.09989 0.370835 0.218816 0.216528 0.149742 0.358012 0.156895 0.0804064 0.168225 0.0581216 0.285241 0.255952 0.0825178 0.603516 0.432269 1.02052 0.299207 0.404119 0.124547 0.177258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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