TCONS_00072752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072752
Unique NameTCONS_00072752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072752 ID=TCONS_00072752|Name=TCONS_00072752|organism=Clytia hemisphaerica|type=transcript|length=425bp
TACAGTGTCATGAACAAAACATTCATAATACAGCCTTAATACGATCGATC
GATACGACTTCATACCCGACCCACCTGTTGAACCAAATTGCGCTGATGAA
AAATACTAAAAGATTTCAAGAGGTCCTCAAAAAAGTGAACATTTGTAATA
TGGGTACCCTGGAGATTGAGGATTCGAGAAAGAGTTTGACCTTTCGTTTA
ACTTTCGTTTAATGAGATTTAATGCTATGAATTGAAATCCACCGTAAAAT
TACCGGCGGACGGCGGAATTTAAAACCtatggcggggatttaattcgGCG
GGTGGGAAAATTTTGGGGacttgtaaataaaaaaattcttggtACTTTAA
CAGTTTTTACTTAAATATGCTGATTTTAGATAGCATTTCTTTTCTAAATA
CTTTGTTTCATTTGGTGAGAATATA
Run BLAST on NCBI

transcript from alignment at scaffold_82:492826..493250

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072752 ID=TCONS_00072752|Name=TCONS_00072752|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at scaffold_82:492826..493250 (Clytia hemisphaerica)
TATATTCTCACCAAATGAAACAAAGTATTTAGAAAAGAAATGCTATCTAA
AATCAGCATATTTAAGTAAAAACTGTTAAAGTaccaagaatttttttatt
tacaagtCCCCAAAATTTTCCCACCCGCcgaattaaatccccgccataGG
TTTTAAATTCCGCCGTCCGCCGGTAATTTTACGGTGGATTTCAATTCATA
GCATTAAATCTCATTAAACGAAAGTTAAACGAAAGGTCAAACTCTTTCTC
GAATCCTCAATCTCCAGGGTACCCATATTACAAATGTTCACTTTTTTGAG
GACCTCTTGAAATCTTTTAGTATTTTTCATCAGCGCAATTTGGTTCAACA
GGTGGGTCGGGTATGAAGTCGTATCGATCGATCGTATTAAGGCTGTATTA
TGAATGTTTTGTTCATGACACTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045162XLOC_045162Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072752-exon-scaffold_82-1491911889:492826..493250TCONS_00072752-exon-scaffold_82-1491911889:492826..493250Clytia hemisphaericaexon
TCONS_00072752-exon-scaffold_82-1510915933:492826..493250TCONS_00072752-exon-scaffold_82-1510915933:492826..493250Clytia hemisphaericaexon
TCONS_00072752-exon-scaffold_82-1575043694:492826..493250TCONS_00072752-exon-scaffold_82-1575043694:492826..493250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:492826..493250 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.328498	0.320337	0.557913	0	0.442997	0	0.211168	0	0.138409	0	0.332812	0.109389	0	0	0	0.200177	0.493204	0	0	0	0.158805	0	1.69492	2.22579	0.881733	0.157385	0	0	0.364607	1.48591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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