TCONS_00072749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072749
Unique NameTCONS_00072749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072749 ID=TCONS_00072749|Name=TCONS_00072749|organism=Clytia hemisphaerica|type=transcript|length=645bp
CTTATCACCAGCGTTTCCAGAATATCCAGCAATGTGGAGTTTGTACTCTA
CCCATTCATCACCTACTGAAAACTTTGAATATTTCGCCCACGATTTGTAA
GAATCACTTCTTCGAACCAAATCGAAACGTACTGTTGAACTTTTCAGATA
AGCTTGTGCGGTCAAATGGAACAGGTTGTCGTTTCCGAGCCAGAATTCTC
TTTGTAGCTCACCGAATCCAATTCTGTATGATTTCCAATCTCGATTGAAA
TTGGTGCTTCCGTCAACACGGCGCTGGACTACTGTCCAGCCACCGCCATC
TGAATCATGGTCACAATAAACAGGAACTGACTTATCTTTTGTATTAGTGT
TGATCATGTATAACCCACTGGTCTTCTCCCCATTGGTGTAATGTTCCTTG
CAATCTCTTCTGATTGGTCTAGCACGACAATCACAGTAGAACTTTTCAAT
CAGGTTGAAGTCTTCCACACAGAAACATGAGCCACAGGAATTAGATTTGA
TTTGACAGTATCTGTTGCGTACAGCATCCTTGGTTTTTAAGAATTCGAGT
TGATTGATTTTTTGGCCTTGCTGTAAGAGCTTCTGTGATAACGTTTGCAC
CTCTGATTGCAATTTACTTATGTCAGAAGATGACACTGAAGGAGC
Run BLAST on NCBI

protein sequence of TCONS_00072749-protein

>TCONS_00072749-protein ID=TCONS_00072749-protein|Name=TCONS_00072749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
APSVSSSDISKLQSEVQTLSQKLLQQGQKINQLEFLKTKDAVRNRYCQIK
SNSCGSCFCVEDFNLIEKFYCDCRARPIRRDCKEHYTNGEKTSGLYMINT
NTKDKSVPVYCDHDSDGGGWTVVQRRVDGSTNFNRDWKSYRIGFGELQRE
FWLGNDNLFHLTAQAYLKSSTVRFDLVRRSDSYKSWAKYSKFSVGDEWVE
YKLHIAGYSGNAGDK
Run BLAST on NCBI

transcript from alignment at scaffold_82:275474..276118

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072749 ID=TCONS_00072749|Name=TCONS_00072749|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at scaffold_82:275474..276118 (Clytia hemisphaerica)
GCTCCTTCAGTGTCATCTTCTGACATAAGTAAATTGCAATCAGAGGTGCA
AACGTTATCACAGAAGCTCTTACAGCAAGGCCAAAAAATCAATCAACTCG
AATTCTTAAAAACCAAGGATGCTGTACGCAACAGATACTGTCAAATCAAA
TCTAATTCCTGTGGCTCATGTTTCTGTGTGGAAGACTTCAACCTGATTGA
AAAGTTCTACTGTGATTGTCGTGCTAGACCAATCAGAAGAGATTGCAAGG
AACATTACACCAATGGGGAGAAGACCAGTGGGTTATACATGATCAACACT
AATACAAAAGATAAGTCAGTTCCTGTTTATTGTGACCATGATTCAGATGG
CGGTGGCTGGACAGTAGTCCAGCGCCGTGTTGACGGAAGCACCAATTTCA
ATCGAGATTGGAAATCATACAGAATTGGATTCGGTGAGCTACAAAGAGAA
TTCTGGCTCGGAAACGACAACCTGTTCCATTTGACCGCACAAGCTTATCT
GAAAAGTTCAACAGTACGTTTCGATTTGGTTCGAAGAAGTGATTCTTACA
AATCGTGGGCGAAATATTCAAAGTTTTCAGTAGGTGATGAATGGGTAGAG
TACAAACTCCACATTGCTGGATATTCTGGAAACGCTGGTGATAAG

Coding sequence (CDS) from alignment at scaffold_82:275474..276118

>TCONS_00072749 ID=TCONS_00072749|Name=TCONS_00072749|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_82:275474..276118 (Clytia hemisphaerica)
GCTCCTTCAGTGTCATCTTCTGACATAAGTAAATTGCAATCAGAGGTGCA
AACGTTATCACAGAAGCTCTTACAGCAAGGCCAAAAAATCAATCAACTCG
AATTCTTAAAAACCAAGGATGCTGTACGCAACAGATACTGTCAAATCAAA
TCTAATTCCTGTGGCTCATGTTTCTGTGTGGAAGACTTCAACCTGATTGA
AAAGTTCTACTGTGATTGTCGTGCTAGACCAATCAGAAGAGATTGCAAGG
AACATTACACCAATGGGGAGAAGACCAGTGGGTTATACATGATCAACACT
AATACAAAAGATAAGTCAGTTCCTGTTTATTGTGACCATGATTCAGATGG
CGGTGGCTGGACAGTAGTCCAGCGCCGTGTTGACGGAAGCACCAATTTCA
ATCGAGATTGGAAATCATACAGAATTGGATTCGGTGAGCTACAAAGAGAA
TTCTGGCTCGGAAACGACAACCTGTTCCATTTGACCGCACAAGCTTATCT
GAAAAGTTCAACAGTACGTTTCGATTTGGTTCGAAGAAGTGATTCTTACA
AATCGTGGGCGAAATATTCAAAGTTTTCAGTAGGTGATGAATGGGTAGAG
TACAAACTCCACATTGCTGGATATTCTGGAAACGCTGGTGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045159XLOC_045159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072749-exon-scaffold_82-1491911889:275474..276118TCONS_00072749-exon-scaffold_82-1491911889:275474..276118Clytia hemisphaericaexon
TCONS_00072749-exon-scaffold_82-1510915933:275474..276118TCONS_00072749-exon-scaffold_82-1510915933:275474..276118Clytia hemisphaericaexon
TCONS_00072749-exon-scaffold_82-1575043694:275474..276118TCONS_00072749-exon-scaffold_82-1575043694:275474..276118Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072749-proteinTCONS_00072749-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:275474..276118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.406855	0.476097	0.460662	0.450686	0.3292	0.433564	0.20923	0.0979395	0.0685698	0.0849347	0	0	8.767	7.41857	43.8949	100.509	17.959	11.395	16.3483	23.896	5.03514	3.22345	110.279	74.8128	36.2562	54.9693	3.682	3.81045	491.045	561.489
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00072749 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.939e-36
Identity = 83/229 (36.24%), Postives = 129/229 (56.33%), Query Frame = -1 
Query:    4 AP-SVSSSDISKLQSEVQTLSQKLLQQGQKIN----QLEFLKTKDAVRNRYCQIKSNSCGSCFCVEDFNLIEKFYCDC------RARPIR----RDCKEHYTNGEKTSGLYMINTNTKDKSVPVYCDHDSDGGGWTVVQRRVDGSTNFNRDWKSYRIGFGELQREFWLGNDNLFHLTAQAYLKSSTVRFDLVRRSDSYKSWAKYSKFSVGDEWVEYKLHIAGYSGNAGD 645
            AP  V  + + +L+SEV  LS +L    ++IN    +LE L   + + N    + S      F V   N ++     C      ++RP++    +DC ++Y  G+++S  Y +  + K+ S  VYCD ++ GGGWTV+Q R+DGSTNF R W+ Y+ GFG L+REFWLGND +  LT     K   +R DL    +  + +A Y +F V +E+++Y+LH+  Y+G AGD
Sbjct:  121 APGEVGDNRVRELESEVNKLSSELKNAKEEINVLHGRLEKLNLVN-MNNIENYVDSKVANLTFVV---NSLDGKCSKCPSQEQIQSRPVQHLIYKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKS---KEMILRIDL-EDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00072749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGL22.939e-3636.24Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1[more]
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