TCONS_00072740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072740
Unique NameTCONS_00072740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072740 ID=TCONS_00072740|Name=TCONS_00072740|organism=Clytia hemisphaerica|type=transcript|length=532bp
TTCAAAGCAGAGTTCGCATCATTTTTGAAGTTACTCGCTGGTTGCTCTca
gtcaaattcaaattcaaagaaaatcgcatgaaaattattttcttttaatt
taagaTACAATAATAACTAAAAATATAACTCTGATTCATTGGATAACAAT
GGTGCTATAATTCTAAATCTCCAAAATTGAATTCTTTGGAATTGAACAAA
ACTTTACGAAGACAAAATGCAACGACAAATGCTTCTACTTATTGTTGTCA
TATTGTCCATGGTCTTGGATAGAACAGTTGATGGTTGCaaacaattttat
caaaagacAGATAAGAGAATTTGGTTTGTAGAGGAATCAATAGATATGAG
AAAGAGAAGCAGATCTCTTGTTCAATGCTTGTTGACGTGTAGCAGGAGAA
AATACGAGTGTGACATGGCAGGATATTCGCCAGTTACTGGAGCATGTATT
TTGTACGAAGAAAGCACACAAACCATGATATTTGATGAAGACGATGGCAT
TGATTTATACGTCCAAAGAACAAATCACCAAG
Run BLAST on NCBI

protein sequence of TCONS_00072740-protein

>TCONS_00072740-protein ID=TCONS_00072740-protein|Name=TCONS_00072740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MQRQMLLLIVVILSMVLDRTVDGCKQFYQKTDKRIWFVEESIDMRKRSRS
LVQCLLTCSRRKYECDMAGYSPVTGACILYEESTQTMIFDEDDGIDLYVQ
RTNHQ
Run BLAST on NCBI

transcript from alignment at scaffold_82:41475..42006

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072740 ID=TCONS_00072740|Name=TCONS_00072740|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_82:41475..42006 (Clytia hemisphaerica)
CTTGGTGATTTGTTCTTTGGACGTATAAATCAATGCCATCGTCTTCATCA
AATATCATGGTTTGTGTGCTTTCTTCGTACAAAATACATGCTCCAGTAAC
TGGCGAATATCCTGCCATGTCACACTCGTATTTTCTCCTGCTACACGTCA
ACAAGCATTGAACAAGAGATCTGCTTCTCTTTCTCATATCTATTGATTCC
TCTACAAACCAAATTCTCTTATCTgtcttttgataaaattgtttGCAACC
ATCAACTGTTCTATCCAAGACCATGGACAATATGACAACAATAAGTAGAA
GCATTTGTCGTTGCATTTTGTCTTCGTAAAGTTTTGTTCAATTCCAAAGA
ATTCAATTTTGGAGATTTAGAATTATAGCACCATTGTTATCCAATGAATC
AGAGTTATATTTTTAGTTATTATTGTAtcttaaattaaaagaaaataatt
ttcatgcgattttctttgaatttgaatttgactgAGAGCAACCAGCGAGT
AACTTCAAAAATGATGCGAACTCTGCTTTGAA

Coding sequence (CDS) from alignment at scaffold_82:41475..42006

>TCONS_00072740 ID=TCONS_00072740|Name=TCONS_00072740|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_82:41475..42006 (Clytia hemisphaerica)
TTGGTGATTTGTTCTTTGGACGTATAAATCAATGCCATCGTCTTCATCAA
ATATCATGGTTTGTGTGCTTTCTTCGTACAAAATACATGCTCCAGTAACT
GGCGAATATCCTGCCATGTCACACTCGTATTTTCTCCTGCTACACGTCAA
CAAGCATTGAACAAGAGATCTGCTTCTCTTTCTCATATCTATTGATTCCT
CTACAAACCAAATTCTCTTATCTgtcttttgataaaattgtttGCAACCA
TCAACTGTTCTATCCAAGACCATGGACAATATGACAACAATAAGTAGAAG
CATTTGTCGTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045150XLOC_045150Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072740-proteinTCONS_00072740-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072740-exon-scaffold_82-1491911889:41475..42006TCONS_00072740-exon-scaffold_82-1491911889:41475..42006Clytia hemisphaericaexon
TCONS_00072740-exon-scaffold_82-1510915933:41475..42006TCONS_00072740-exon-scaffold_82-1510915933:41475..42006Clytia hemisphaericaexon
TCONS_00072740-exon-scaffold_82-1575043694:41475..42006TCONS_00072740-exon-scaffold_82-1575043694:41475..42006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:41475..42006 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.329515	0.535548	0.621822	0.243342	3.25871	1.40459	0	0.132203	3.51722	4.35665	3.22714	1.97509	0.2922	0.455179	0	0	0.16491	0.253542	0.350281	1.09963	1.69917	0.776994	0.377815	1.25946	10.2598	7.36738	0.30122	0	0.243824	0.248418
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top