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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072731 ID=TCONS_00072731|Name=TCONS_00072731|organism=Clytia hemisphaerica|type=transcript|length=1211bp
CGCCaagaaatagtatttttttggaTACACCCAATCATAAGTCACGCTCA
ATGGTTCATTTGAAACAACGTGCATCAGTGGTTACTCATGGACACGGTAA
CGTTGTCGGACCTGCAACTTCTATAAAAAGCCTTGATAAACGAACTTTAG
AAAATTCGTTATCACAGAGTTTTTCAAGAAGGTCGTCACCTCATCGGTCG
GCCAGTCGGATCAGTCAGGTCAGTAAGACACCCTCTCCAACAACAAACTT
CACATCAGATTCAGGAGAAGAAAACAGTGACCACGAAAATCATCGCGATG
AGAGTTTGACGAAACGTTGGCTTAAACCACGCACAAAGAAACATATGCAA
CGTAGTAATTCCGATATGCAACGGCGTCCGAAACGAACATCAAACCGTAG
CAAACGTTGCGTTTTTAGTGACGGGGAGAGTAAGAATTATCATCATTGGA
GTGAAATCATGAAAAGAGGATCTTCGGTTTCCACATGTAGTTACCACTCT
GCCGGCGCCGCTAACCACACCACAACCACCACCACAAAACACCAACGCCA
CAGTGTAGCAACTACACCTACAGCCAAACATCGAGATACGACCACCGATG
AAGACCTGTTCTTAAGATCTATGAAAAAACTTTATCTAGAGACCACCAAA
CATTTCAAGAAACGAACGCATACGCAAGTTAAAcggttgaaaagaaaaat
gtcagATATGGAACAATCGTACTTAGAAAGTTACTTAGCGAAAGAGAAGG
AATGGTCGAATCGTGACGAACAATTAAGAAAAGAACTTTTTCGTTTGGAA
GAACAAATGTATGATATGAAGGGTAAAATGAAGGAAAAAGATGAAGAGAT
AAACAAATTATTGGGTGCTTCTGATACTTCAAATACAAATTCATTGGTCA
AAAGTAACCATCTTGAAGCAATGGTTGTTGAAGAGAAAAATCGCATCTTC
ACTCGTAATCATCATCGAGCGataaataTTTGATTCGATGTGGCGAGAAT
GGAGACACGTGAAGGTTGGAGTGACAACACGGCAGATTGAAATCAtcaga
aatgacgtcatttagtcTCAAAGATGACGTAATCATCCCAAACCGAACCA
AAAAcaatatatttatttatttcgaATTGTAGATAAACCCTTTCTATAAA
TAGAGTACAAATGTAAAGCAACGAGAAAAGAATCCCATCACTTCTAATTT
TGGACCCAAAC Run BLAST on NCBI transcript from alignment at scaffold_82:371240..373437- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072731 ID=TCONS_00072731|Name=TCONS_00072731|organism=Clytia hemisphaerica|type=transcript|length=2198bp|location=Sequence derived from alignment at scaffold_82:371240..373437- (Clytia hemisphaerica)
CGCCAAGAAATAGTATTTTTTTGGATACACCCAATCATAAGTCACGCTCA
ATGGTTCATTTGAAACAACGTGCATCAGTGGTTACTCATGGACACGGTAA
CGTTGTCGGACCTGCAACTTCTATAAAAAGCCTTGATAAACGAACTTTAG
AAAATTCGTTATCACAGAGTTTTTCAAGAAGGTCGTCACCTCATCGGTCG
GCCAGTCGGATCAGTCAGGTCAGTAAGACACCCTCTCCAACAACAAACTT
CACATCAGATTCAGGAGAAGAAAACAGTGACCACGAAAATCATCGCGATG
AGAGTTTGACGAAACGTTGGCTTAAACCACGCACAAAGAAACATATGCAA
CGTAGTAATTCCGATATGCAACGGCGTCCGAAACGAACATCAAACCGTAG
CAAACGTTGCGTTTTTAGTGACGGGGAGAGTAAGAATTATCATCATTGGA
GTGAAATCATGAAAAGAGGATCTTCGGTTTCCACATGTAGTTACCACTCT
GCCGGCGCCGCTAACCACACCACAACCACCACCACAAAACACCAACGCCA
CAGTGTAGCAACTACACCTACAGCCAAACATCGAGATACGACCACCGATG
AAGACCTGTTCTTAAGATCTATGAAAAAACTTTATCTAGAGACCACCAAA
CATTTCAAGAAACGAACGGTACGTAGAATCCAATTTCATTTCAATTTGTA
TAACTTTCGCTTTGAATCTGAAATCACAAGTCAAGAGCTACCTGAGACTT
TAGTAATTGATTCATTTTACGGGCGAGGATTATACGCAAATTACACAAAA
ATCTTTTGATGGGAATGGTGATGGCTAACAGACATGTGCCATCCGACCTC
TGGTACTCTGACTCAAAATTTTGAAAGTTAAACAATCCTTTCAATAAAAA
TTTGAACTGTTAAGAAGTCAAAAATTAAATCGTTTCTATTTTCCAACCAT
AAGGGGTACTAAAATTAATTTTTCAAAGGTACTTCAAGGTCTAAAAAGGT
GACAAATTGAACTCCAGGGGATGCCATATTATTTATTTACCATATCATTT
CTATCTTATCATTCCAGCATACGCAAGTTAAACGGTTGAAAAGAAAAATG
TCAGATATGGAACAATCGTACTTAGAAAGTTACTTAGCGAAAGAGAAGGA
ATGGTCGAATCGTGACGAACAATTAAGAAAAGAACTTTTTCGTTTGGAAG
AACAAATGTATGATATGAAGGGTAAAATGAAGGAAAAAGATGAAGAGATA
AACAAATTATTGGGTGCTTCTGATACTTCAAATACAAATTCATTGGTCAA
AAGTAACCATCTTGAAGCAATGGTTGTTGAAGAGAAAAATCGCATCTTCA
CTCGTAATCATCATCGAGCGGTAAGATGAAAGAAATAAAACCTTATTGCG
CCAAAGTGGATTTTTTTACGCCAACGGTCGAAGACCTACGCTAGCGGCCG
AAAACTGAAGACGGCCGCTGGAAACTGATCACACATTAAATATGTAGGTA
TTCGGCCGTTAGTGTAGGGTTTCGGCCCCTTGAAAATCGGCCGCTAGCGT
AGGTCGACGTCCGTTGACGGAAAAAAAATTCGCAGCGCTGAAAAGTATGT
TGCTGGAAGAAGAATGTCAGTCTTCATTACTGTAACATCCCCCTTGCTTA
AGCATTCTGGTGAAAATTAATTTGGGTTATAAGTGAAAGGAAAGGCTGCT
GGAATCCTCTAACAGATTTGTACTGCATGTAGTACCTGCAGTTTTGTAGG
GATCTAGTCTATATTTTTCTACCAAAGCTTTTTGGTGAAAGTTAATTTGG
GTTATAAGCGAAAGGAAAGGCTGTTGGAACCTTCTAACGGATTTATATTC
CTTTTAAAGGGATGTCAAAAAACGAGGACTTTCTGCTCAATAGTTGTTTT
GAGGCTTTAAATTTACGGGGGCGAAATAATTGAAATTTTTCCAATCGTTT
TTTTTTAGATAAATATTTGATTCGATGTGGCGAGAATGGAGACACGTGAA
GGTTGGAGTGACAACACGGCAGATTGAAATCATCAGAAATGACGTCATTT
AGTCTCAAAGATGACGTAATCATCCCAAACCGAACCAAAAACAATATATT
TATTTATTTCGAATTGTAGATAAACCCTTTCTATAAATAGAGTACAAATG
TAAAGCAACGAGAAAAGAATCCCATCACTTCTAATTTTGGACCCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072731-exon-scaffold_82-1575043694:372770..373437 | TCONS_00072731-exon-scaffold_82-1575043694:372770..373437 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1575043694:372068..372370 | TCONS_00072731-exon-scaffold_82-1575043694:372068..372370 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1575043694:371240..371479 | TCONS_00072731-exon-scaffold_82-1575043694:371240..371479 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1510915933:372770..373437 | TCONS_00072731-exon-scaffold_82-1510915933:372770..373437 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1510915933:372068..372370 | TCONS_00072731-exon-scaffold_82-1510915933:372068..372370 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1510915933:371240..371479 | TCONS_00072731-exon-scaffold_82-1510915933:371240..371479 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1491911889:372770..373437 | TCONS_00072731-exon-scaffold_82-1491911889:372770..373437 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1491911889:372068..372370 | TCONS_00072731-exon-scaffold_82-1491911889:372068..372370 | Clytia hemisphaerica | exon |
| TCONS_00072731-exon-scaffold_82-1491911889:371240..371479 | TCONS_00072731-exon-scaffold_82-1491911889:371240..371479 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:371240..373437 - |
Blast
The following BLAST results are available for this feature:
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