TCONS_00072731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072731
Unique NameTCONS_00072731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072731 ID=TCONS_00072731|Name=TCONS_00072731|organism=Clytia hemisphaerica|type=transcript|length=1211bp
CGCCaagaaatagtatttttttggaTACACCCAATCATAAGTCACGCTCA
ATGGTTCATTTGAAACAACGTGCATCAGTGGTTACTCATGGACACGGTAA
CGTTGTCGGACCTGCAACTTCTATAAAAAGCCTTGATAAACGAACTTTAG
AAAATTCGTTATCACAGAGTTTTTCAAGAAGGTCGTCACCTCATCGGTCG
GCCAGTCGGATCAGTCAGGTCAGTAAGACACCCTCTCCAACAACAAACTT
CACATCAGATTCAGGAGAAGAAAACAGTGACCACGAAAATCATCGCGATG
AGAGTTTGACGAAACGTTGGCTTAAACCACGCACAAAGAAACATATGCAA
CGTAGTAATTCCGATATGCAACGGCGTCCGAAACGAACATCAAACCGTAG
CAAACGTTGCGTTTTTAGTGACGGGGAGAGTAAGAATTATCATCATTGGA
GTGAAATCATGAAAAGAGGATCTTCGGTTTCCACATGTAGTTACCACTCT
GCCGGCGCCGCTAACCACACCACAACCACCACCACAAAACACCAACGCCA
CAGTGTAGCAACTACACCTACAGCCAAACATCGAGATACGACCACCGATG
AAGACCTGTTCTTAAGATCTATGAAAAAACTTTATCTAGAGACCACCAAA
CATTTCAAGAAACGAACGCATACGCAAGTTAAAcggttgaaaagaaaaat
gtcagATATGGAACAATCGTACTTAGAAAGTTACTTAGCGAAAGAGAAGG
AATGGTCGAATCGTGACGAACAATTAAGAAAAGAACTTTTTCGTTTGGAA
GAACAAATGTATGATATGAAGGGTAAAATGAAGGAAAAAGATGAAGAGAT
AAACAAATTATTGGGTGCTTCTGATACTTCAAATACAAATTCATTGGTCA
AAAGTAACCATCTTGAAGCAATGGTTGTTGAAGAGAAAAATCGCATCTTC
ACTCGTAATCATCATCGAGCGataaataTTTGATTCGATGTGGCGAGAAT
GGAGACACGTGAAGGTTGGAGTGACAACACGGCAGATTGAAATCAtcaga
aatgacgtcatttagtcTCAAAGATGACGTAATCATCCCAAACCGAACCA
AAAAcaatatatttatttatttcgaATTGTAGATAAACCCTTTCTATAAA
TAGAGTACAAATGTAAAGCAACGAGAAAAGAATCCCATCACTTCTAATTT
TGGACCCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_82:371240..373437-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072731 ID=TCONS_00072731|Name=TCONS_00072731|organism=Clytia hemisphaerica|type=transcript|length=2198bp|location=Sequence derived from alignment at scaffold_82:371240..373437- (Clytia hemisphaerica)
CGCCAAGAAATAGTATTTTTTTGGATACACCCAATCATAAGTCACGCTCA ATGGTTCATTTGAAACAACGTGCATCAGTGGTTACTCATGGACACGGTAA CGTTGTCGGACCTGCAACTTCTATAAAAAGCCTTGATAAACGAACTTTAG AAAATTCGTTATCACAGAGTTTTTCAAGAAGGTCGTCACCTCATCGGTCG GCCAGTCGGATCAGTCAGGTCAGTAAGACACCCTCTCCAACAACAAACTT CACATCAGATTCAGGAGAAGAAAACAGTGACCACGAAAATCATCGCGATG AGAGTTTGACGAAACGTTGGCTTAAACCACGCACAAAGAAACATATGCAA CGTAGTAATTCCGATATGCAACGGCGTCCGAAACGAACATCAAACCGTAG CAAACGTTGCGTTTTTAGTGACGGGGAGAGTAAGAATTATCATCATTGGA GTGAAATCATGAAAAGAGGATCTTCGGTTTCCACATGTAGTTACCACTCT GCCGGCGCCGCTAACCACACCACAACCACCACCACAAAACACCAACGCCA CAGTGTAGCAACTACACCTACAGCCAAACATCGAGATACGACCACCGATG AAGACCTGTTCTTAAGATCTATGAAAAAACTTTATCTAGAGACCACCAAA CATTTCAAGAAACGAACGGTACGTAGAATCCAATTTCATTTCAATTTGTA TAACTTTCGCTTTGAATCTGAAATCACAAGTCAAGAGCTACCTGAGACTT TAGTAATTGATTCATTTTACGGGCGAGGATTATACGCAAATTACACAAAA ATCTTTTGATGGGAATGGTGATGGCTAACAGACATGTGCCATCCGACCTC TGGTACTCTGACTCAAAATTTTGAAAGTTAAACAATCCTTTCAATAAAAA TTTGAACTGTTAAGAAGTCAAAAATTAAATCGTTTCTATTTTCCAACCAT AAGGGGTACTAAAATTAATTTTTCAAAGGTACTTCAAGGTCTAAAAAGGT GACAAATTGAACTCCAGGGGATGCCATATTATTTATTTACCATATCATTT CTATCTTATCATTCCAGCATACGCAAGTTAAACGGTTGAAAAGAAAAATG TCAGATATGGAACAATCGTACTTAGAAAGTTACTTAGCGAAAGAGAAGGA ATGGTCGAATCGTGACGAACAATTAAGAAAAGAACTTTTTCGTTTGGAAG AACAAATGTATGATATGAAGGGTAAAATGAAGGAAAAAGATGAAGAGATA AACAAATTATTGGGTGCTTCTGATACTTCAAATACAAATTCATTGGTCAA AAGTAACCATCTTGAAGCAATGGTTGTTGAAGAGAAAAATCGCATCTTCA CTCGTAATCATCATCGAGCGGTAAGATGAAAGAAATAAAACCTTATTGCG CCAAAGTGGATTTTTTTACGCCAACGGTCGAAGACCTACGCTAGCGGCCG AAAACTGAAGACGGCCGCTGGAAACTGATCACACATTAAATATGTAGGTA TTCGGCCGTTAGTGTAGGGTTTCGGCCCCTTGAAAATCGGCCGCTAGCGT AGGTCGACGTCCGTTGACGGAAAAAAAATTCGCAGCGCTGAAAAGTATGT TGCTGGAAGAAGAATGTCAGTCTTCATTACTGTAACATCCCCCTTGCTTA AGCATTCTGGTGAAAATTAATTTGGGTTATAAGTGAAAGGAAAGGCTGCT GGAATCCTCTAACAGATTTGTACTGCATGTAGTACCTGCAGTTTTGTAGG GATCTAGTCTATATTTTTCTACCAAAGCTTTTTGGTGAAAGTTAATTTGG GTTATAAGCGAAAGGAAAGGCTGTTGGAACCTTCTAACGGATTTATATTC CTTTTAAAGGGATGTCAAAAAACGAGGACTTTCTGCTCAATAGTTGTTTT GAGGCTTTAAATTTACGGGGGCGAAATAATTGAAATTTTTCCAATCGTTT TTTTTTAGATAAATATTTGATTCGATGTGGCGAGAATGGAGACACGTGAA GGTTGGAGTGACAACACGGCAGATTGAAATCATCAGAAATGACGTCATTT AGTCTCAAAGATGACGTAATCATCCCAAACCGAACCAAAAACAATATATT TATTTATTTCGAATTGTAGATAAACCCTTTCTATAAATAGAGTACAAATG TAAAGCAACGAGAAAAGAATCCCATCACTTCTAATTTTGGACCCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045142XLOC_045142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072731-exon-scaffold_82-1575043694:372770..373437TCONS_00072731-exon-scaffold_82-1575043694:372770..373437Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1575043694:372068..372370TCONS_00072731-exon-scaffold_82-1575043694:372068..372370Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1575043694:371240..371479TCONS_00072731-exon-scaffold_82-1575043694:371240..371479Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1510915933:372770..373437TCONS_00072731-exon-scaffold_82-1510915933:372770..373437Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1510915933:372068..372370TCONS_00072731-exon-scaffold_82-1510915933:372068..372370Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1510915933:371240..371479TCONS_00072731-exon-scaffold_82-1510915933:371240..371479Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1491911889:372770..373437TCONS_00072731-exon-scaffold_82-1491911889:372770..373437Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1491911889:372068..372370TCONS_00072731-exon-scaffold_82-1491911889:372068..372370Clytia hemisphaericaexon
TCONS_00072731-exon-scaffold_82-1491911889:371240..371479TCONS_00072731-exon-scaffold_82-1491911889:371240..371479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:371240..373437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0653655 0.0343053 0.14802 0.557364 0 0 0.342722 0.351033 0.699091 0.54826 0.300307 0.274029 1.06549 0.686838 0.21688 0.0829838 0.706394 1.45123 3.32237 6.70181 1.59975 1.59536 0.309182 0.273661 0.317024 0.781094 1.61484 2.5443 0.0448409 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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