TCONS_00072728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072728
Unique NameTCONS_00072728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072728 ID=TCONS_00072728|Name=TCONS_00072728|organism=Clytia hemisphaerica|type=transcript|length=1638bp
atatttcttacatgtttcttcGGTCAGACGTAGTGTCGGTCATCAATAAA
TAATTATGGAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGACAATATTA
ATAGTGTTGCTTTTGATTCGATCAAGTAAATCTGGTGATAGCGTCATTCT
TTTGGGCTTATGTGATTCTGGTAAAACTTCATTATTTGGACAGCTTACCA
CCGGAAAAGAATTGAAGACCCAAACTTCCATTAttgaaaacaaaggaaag
aTCAGTACAACTGCCACAAAGAACGGTAAACCGTGGAAATTGATTGACAT
TCCAGGCCATGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGACA
ATGCAAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAA
ATTCGTGATGTGGCAGAATGCATGTATGACTTGTTAGCTAACCGCACAAT
GCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGATATTC
CCACCGCGAAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTa
aACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATTA
TTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAAT
TCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGAAG
AACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCT
TGAAAAATTGTAGATATTATCAGTGGTTTTTAGGgtgttgttatttttat
ttattagtAATGATAGTAACATATTAGTCCCCGTGTCAATCAAAAATTCa
gctttttctaaatttctaaaaacgAGAATTTTCAGATTTACATTCCTAAA
CCAAAAGACAAACTATCTTATTCCCGTGGTTTTCTAGCCTTTTCAAAAAG
GATCATGCAAATTTGTATAATcaattttgttgtgttttttaaaatattag
tTTGTTTTAATGCAAAATGAATATAAATGTATTTTGAAATGCGAAATTTT
GCATTTATATGGATCAACTATTTACAAATGCGTTTACGATTAGAAAATAA
ATTGCTTTTCTTGTTTAcccaaaatatttaataaaaaatattttgagcga
AAATTTATGAATGTTCGATCTTCTTTACACAATATTAGGTAAATGATTTT
CTTGCCCGATTAAACTGGTTTTGGAGTCAGTTCTTTCTTTATGCTTCTGA
TTGACTTTGACAGGACTTCCAGCTTTATCGCTTTTGGTTTCGTCATCATC
ATAGCCTAAGTTGAAAAGGCTCTCACTAGCCTCTGATTCTGTTGCTAATA
AAGCATCCATGGACAGTTCAGGTGCTTGATCTATACCATCTGTTTCATGT
TCTTCAGGAACTGAGGCTAGTTCAGGTGATTTTTCTGTTACCGACTTTTT
CTGAGGTGAGGGGGGTGCACCTGTTAAACGTCTTGTTTTATCCATCACGC
TTTGACGAACATTTCCAAGCATGTTCATGCCTTGTTCCGCTTTTGACTTG
GCTTGATCAGCTAAATGATGTAACATGGAGGTGACGAGACCGAGAATAAT
GGTCAACGCTGACAAGCCGAGTAAGAAGTAAAGTAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_82:255391..263562-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072728 ID=TCONS_00072728|Name=TCONS_00072728|organism=Clytia hemisphaerica|type=transcript|length=8172bp|location=Sequence derived from alignment at scaffold_82:255391..263562- (Clytia hemisphaerica)
ATATTTCTTACATGTTTCTTCGGTCAGACGTAGTGTCGGTCATGTGAGTG AAGTAATTTTTACTTTAATTCAAAGATTTTTCAGTTTGGTTCAATCTAAA AGATCTTTCTTGCCTGTTTTTGCTGTTTTTATTTTGCATTGCGTATTTAA AATCGCTCACAACATCTTGATTTTCTAGCTAGCTAATATCTCAGAATATC TTTTTTGATATATTTTATTGAGATAACTCTAATCCTTGTCTTTGCAATTA CATTCTTTAGATGACTGATGCTTTTTTTCAGAAACCTGAATTTCCTAGTG TGACTAACTGGTGGGCAGACCAACTAAAGATGTTCATTTTGAGAGTGAGA TAGAAATTTTGAACATGAAGGAAAATCCAACATGTGTTACCGTAAGTTGG TCTAATGTCGACATCCGTCTTCTAATTTCGACATCCTACTTTATAGATAG GAATAAAAAGAAGGTCGAAATCACTGATAGACTAAAGATTTTTCCTCTCA TCGGGCGGCTAATCAAAGTCTATCAGCGATTCCGACCTTCCTCAGTTTCT ATATTGTTCCTATCTCTAAAGAAGGGTTTCAAAATTAGAAGGCGGATGTC GACATTAGACCAACTTACGGTAGGTTCCATGACCTGTCAAGATTTTTTAA TATCTTTTTCTTTGGTAAAACAATCTCAAATAAAAAGGAAATTGACAAGG AATAGATAAGCTTTTCATATAGTCAAACAGAATTATCATAGCTTTTTACC AAAAAAATATATTACTGTTCAGTAAAGGTCCAATTTCAGCCAAATCCAAC TTTTGTTCTTGCTGGTGCAGAGCTCTGACATTAGGCTGTCAGACCGAGAT AAGACGCGGATACTTCAATAAAAAGTTATGCAAGAAAAACCACCATTTCC ATCTAAAAAGGTCACTTTTTTTGCCAAAGAACTTTTGATAAAACTGTTCC CCTAATTTCCCCCTTTCACTAGATCTTCCTCTATCTTATGTGCTTCAGAA AAACCAAAAACATTGCCCTAAAAGCTTAGCCTCGCGTTTATAAATTGAAA ATCGGGGAAATTCTTTTAGCAAAGTATTCTATTATCATTATCCCTTTATT TTAAGTTCTGGAACTTTTAAAGAAAAATGGAAAAATAGAAAAGTTGTATT TATACTCATAGTGTGCAGAGAGGTCCAGCCCCCAGCATTTTTCAGGGGGG GCTAAGGAAAATAGCCCTCAGCTAAATTCTAGAATTTAAATTCTAAATTC TAAATTCCTCCACCTTCACAAAGCAAAATATCAAAGAAATTTTGCATGCA AATTTTCGATAAATTTATTGCGCCGCAGGGAAAATGTTTTTTCAAGAGGG ATAAAACCTTCCCAACAGCATAGATTTTTAACATAATTTAAAATATCTTC AACCTATCAGCTCTGCCACCAGTTCTACTACACAGCACTCAGCCCCCCCT AGCAAGCTAGCCTCCAGTAATTTTTGAAAAATACAGCCCCCAATCAAACA AAAATGGTTTAGCCCCCCCCTAAGCTCAGGGGGGATTCATTCTATGATAC TGCTTTATTCATATTTTGAATTTAAAGCTCTCCCTATGTGACTTTTTTTT GCAAACTTCAAAAACCTGATTTTTTTCCGTTTTTTGCGGGACTCTAACTT AAGTGCTTGCATGCAGCAATAGGTACAAAGTCCAAATATGCGTTATTCGT AGATTTTGTTTGAAATTCGGTACCTCTAGTGGGGATAATGACTTAGGGTT TAGATCTTTTGATAATCAGGATGCCATGTTGAATAATTAAAAACTTCAAA CAATGACACAGTTAATGCATTATTTTTGTAGACTTGTGGAATGCATACTA TTTTCATATAATTAGGTATTGGGCTCGCCACGCCTGTGAATCCTTTATAG CTCCCTACTAACTTGGGCAATGTATCTTTCCATTAAGTCATTGGCGCATG ATCATCTGCAAAGCTATCTTTTTCATAGTACTGAATCATTCGTTTGTTGA AGATCACCACCGAAACTACAGACTACCTGCAAGAAAAATAGTTGGGTTAA TTTATTGAGGTTTCTTCCTCTCAAGTTTGGCTGTGCTGGTCCAAACAGGG GCACCTCGTGAAGGATGTGTATTTGAAATTGCTTAAAATTCTAACAAGAT TCTTAATATTTCTTGCAGCAATAAATAATTATGGAGCTGTATTTAGTGGC AGGGATTGTTCTCGTGACAATATGTAAGTTATCTATATCTTATTAACTTA ACCTTGCCTCACTCATTTTTAAATGTTTATTATCAAGCTTTTTGGGATTT GTATTATCGTTATCTGCCAGGCTACGTGATTTTTATCTATTTTTTTTGGC CTCATCACAAAGTTTTGTATTTACCACTGATCAGTTAAAATAGCAATTAA AGTTGAACAATTTTTCCAAAGACTGTAATTCTGTTTTGATTTTCAAAAAG CCATGTGAATCAATTTATCATAATTTTTAATTGCTGCTTATAACATAGCA AAGAATTGACTGATAAAAGCTATGATGATTTTAAAAGGACGTAGAAATTT GGTTCTCAAAGCTTAACAAGCAGAATTCTAAAAATTTTTAGAACTATTGT GACTAAGTTGTAACCAACTAAAATTTACGGAGTTAGAATTTGTAGATAAT CTTTTAACCTGATGCAATTTCTTCTTTTAGTAATAGTGTTGCTTTTGATT CGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGATTC TGGTAAAACTTCATTATTTGGACAGGTAAGTTTGTTGATATTCTTTTAGT TTCATAATAATTTAAGAAACATTAGCATATAACAGGTAGCTCTGAAATCT AAGAAATATTGATAATGTGATCTAAGTCTGCTTGCAATAAGTGTTCACTC TTATGGGTCTTTTCGTGGAAACAATGTCATTTTACAACTCGCTGATTTTT CAGCTTACCACCGGAAAAGAATTGAAGACCCAAACTTCCATTATTGAAAA CAAAGGAAAGATCAGTACAACTGCCACAAAGGTACTCTAACCCCCTCGTA TATTTTTTAAAAAGCTTTTTTCTTGTGTGTAATAGGTGCTTAGCTATGAC ATATTTGGTGGCGTATATAACAAGATATCGAGCATTTTAAGGTGTCTATG AAATTCCATATTGATGTAAGATTCAAAATCAATTCTTATCAATCTACTAT TTCGTGTACTCATGATATGCACCACTGCAATGACTCCACTAAATTATGCA ACTTTTCTGTTGTTTTTTGTTCCACCCAACACGTCACTTTTTCTATTGTT TAAGTGACGCATTGGGCTGAAAAGCTTAAAAGTTTTCAGAAGACTCTCCA GTGGTGCATATCATGAATATATCGAGAAAAAAGGAACTAATTTACAATTG TTGGTGCAGTCTTCAGACAATGTAGATCTTTGTTGTATTTATTTCACTGT ACAAAAAGCTATTTTTTACCTCTTCTTTTCTTCTGATAGAACGGTAAACC GTGGAAATTGATTGACATTCCAGGCCATGAAAGAGTTCGAGATAAATATT TCTACAACAACAAAGACAATGCAAGGTAAATTCACAGTAGTTTGATAACA AAGTAGTTATCCTTGCTGCTATCTCTATGTTTTTAATTTTGTTACGATTA CTGACACTCTTGTATCCCCTTCCTTAGCATTGAAAATAGCGAATTTATGT AAAATAAAGACTTTCGCATAAGGGTATTAACTCAGGCACGGGAATTTTGT TTAATGTAGTTTTTAAGAATATGGAAATAACTTAAGTTATTTGAAACAAG TGCGTTTTATTTTTAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTC CCTCGAGAAATTCGTGATGTGGCAGAGTAAGTCTTGTTTTATAAAAATTT ATTAAGATTAAGTCTGTTTGCTGTGAAACACGTTTCCCTTAGCTTCGCCA TTCAAAGTGCTTGAACAGGAGAATATTTCATATGGATCTTCCAAACTGTA ATTTCAACTCCGTCCAGTAATAAAAAGCCGTTCAACTGAAAATCTTCAAT CCTGGTTTATTTTACACTTCTTTGATCAGACAATATTAGGTCCCTAAATG GAGATGCTAGCGTAACAGAAGTGTCATCGTTGACTCACTGTTCTTTTCAA TTTCACAGATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAA CAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGGTATTGCATTCAAAT CCTCTGATGATTATATTTTCCAATATGTTGAAATTATTGAAATTAATAAT TAGTATTATGTATTAGTGATATAATTAGAAGTGTCTGACTTCTAACGATA TACCAATTCAAATTACAGATATTCCCACCGCGAAATCACACAACGTTATC AAAAGCCAATTGGAAAAAGAATTGTAAGTTTTATCTTATCTTAGCTTCTA AAGTTTTCTATCTCTGCTTACCAAGCTAACAATCAAAAGTATGCCACAAA GTTTACAACTTTATTTTCGTAAAGATAAATCTCTCATTAATCTTGAAAAA ACGAAATCTATGTATTTCCTTAAAGTTCTTGCATCGGAGGTAACCTCTAT AAGGTAAGTCTCTATAAGGTAGCCCGTTTCAGTCGAAAAACACCGTTTTT TTCACTCAAACAGGCAACCCTCTAAGACTTGTAACTTTAAATTCATGTGA AAAACCATGGTTTATCTGAAATGAGTTTCTAGCACTAAAGGATAAAAAGT GCATTTTTCATCTTCTTTTTCTAAAATTTTTTAGAATAACTTATTCCAAA AAATTATAGTGCTATGAGCACAGATCTGTAAAGCCCGAAACTTTAAGCTT TCTCCAGCAAAAAAAAGTGAAGCGAAAATTGAACTTTTTAAATTTCGTGC CGATGGATAGGATCTAGCATTTTAAAATTGTTTTTGGAGCGCGAGATAAA AAAAGTAGTGATTTCTTTGGTAGGGAAACCTACCAAAACTTGCTTCACTT TTCGATAAAAGGCCGCGGATCTAGGCTATGAGTTATCTTTTCAACGGCGT ATGATTTGTTGTATTTGAGACATTCGTTGAAAAAATGCAAGAAAACAAGC ACTACTTACTTACTTAAAAGTGAATGGACTTTTAAAATCTATAAAATCGG GTGATGAAAGTCGATCTTAACATTCCCCTCTCATTATTTTCAATTTCAGA AACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATTA TTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAAT TCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGNTTTTTACCTCTTC TTTTCTTCTGATAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGGC CATGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAG GTAAATTCACAGTAGTTTGATAACAAAGTAGTTATCCTTGCTGCTATCTC TATGTTTTTAATTTTGTTACGATTACTGACACTCTTGTATCCCCTTCCTT AGCATTGAAAATAGCGAATTTATGTAAAATAAAGACTTTCGCATAAGGGT ATTAACTCAGGCACGGGAATTTTGTTTAATGTAGTTTTTAAGAATATGGA AATAACTTAAGTTATTTGAAACAAGTGCGTTTTATTTTTAGAGGTATTCT TTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCAG AGTAAGTCTTGTTTTATAAAAATTTATTAAGATTAAGTCTGTTTGCTGTG AAACACGTTTCCCTTAGCTTCGCCATTCAAAGTGCTTGAACAGGAGAATA TTTTATATGGATCTTCCAAACTGTAATTTCAACTCCGTCCAGTAATAAAA AGCCGTTCAACTGAAAATCTTCAACCCTGGTTTATTTTACACTTCTTTGA TCAGACAATATTAGGTCCCTAAATGGAGATGCTAGCGTAACAGAAGTGTC ATCGTTGACTCACTGTTCTTTTCAATTTCACAGATGCATGTATGACTTGT TAGCTAACCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGC AACAAACAAGGTAACAAATTTATATCCTCTGATGATTATATTTTCCAATA TTTTGGCAATTATTGAAATTAATAATTAGTATTATGTATTAGTGATATAA TTAGAAGTGTCTGACGTTTACCCCGTTGCTTTCATTTGTAGTCTTTTAAC GATATACCAATTCAAATTACAGATATTCCCACCGCGAAATCACACAACGT TATCAAAAGCCAATTGGAAAAAGAATTGTAAGTTTTATCTTATTTTACCT TCTAAAGTTTTCTATTCTGCTTTAGCTAACGATCAAAAGTTTGTCACAAA GTTTACAACTTTATTTTCGTAAAGATAAATCTCTCATTAATCTTGAAAAA ACGAAATCTATGTATTCCCTTAAAGTTCTTGCATCGGAGGTAACCTCTAT AAGGTAGCCCGTTTCAGTCGAAAAACACCGTTTTTTTCACTCAAACAGGC AACCCTCTAAGACTTGTAACTTTAAATTCATGTGAAAACCATGGTTTATC TGAAATGAGTTTCTAGCACTAAAGGATAAAAAGTGCATTTTTCATCTTCT TTTTCTAAAATTTTTTAGAATAACTTATTCCAAAAAATTATAGTGCTATG AGCACAGATCTGTAAAGCCCGAAACTTTAAGCTTTCTCCAGCAAAAAAAA GTGAAGCGAAAATTGAACTTTTTAAATTTCGTGCCGATGGATAGGATCTA GCATTTTAAAATTGTTTTTGGAGCGCGAGATAAAAAAAGTAGTGATTTCT TTGGTAGGGAAACCTACCAAAACTTGCTTCACTTTTCGATAAAAGGCCGC GGATCTAGGCTATGAGTTATCTTTTCAACGGCGTATGATTTGTTGTATTT GAGACATTCGTTGAAAAAATGCAAGAAAACAAGCACTACTTACTTACTTA AAAGTGAATGGACTTTTAAAATCTATAAAATCGGGTGATGAAAGTCGATC TTAACATTCCCCTCTCATTATTTTCAATTTCAGAAACAAACTTCGGCAAA CTCGTTCGGCAGCTTTACTTGGAATTGACGATTATTCATCCAGTAGAAAT GCTTTCATCGGTAAGCAAGGGAAAGACTTTGAATTCTCGCATGTCAATCC AATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGAACACACAAGTTGAGG GAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTTGAAAAATTGTAGATA TTATCAGTGGTTTTTAGGGTGTTGTTATTTTTATTTATTAGTAATGATAG TAACATATTAGTCCCCGTGTCAATCAAAAATTCAGCTTTTTCTAAATTTC TAAAAACGAGAATTTTCAGATTTACATTCCTAAACCAAAAGACAAACTAT CTTATTCCCGTGGTTTTCTAGCCTTTTCAAAAAGGATCATGCAAATTTGT ATAATCAATTTTGTTGTGTTTTTTAAAATATTAGTTTGTTTTAATGCAAA ATGAATATAAATGTATTTTGAAATGCGAAATTTTGCATTTATATGGATCA ACTATTTACAAATGCGTTTACGATTAGAAAATAAATTGCTTTTCTTGTTT ACCCAAAATATTTAATAAAAAATATTTTGAGCGAAAATTTATGAATGTTC GATCTTCTTTACACAATATTAGGTAAATGATTTTCTTGCCCGATTAAACT GGTTTTGGAGTCAGTTCTTTCTTTATGCTTCTGATTGACTTTGACAGGAC TTCCAGCTTTATCGCTTTTGGTTTCGTCATCATCATAGCCTAAGTTGAAA AGGCTCTCACTAGCCTCTGATTCTGTTGCTAATAAAGCATCCATGGACAG TTCAGGTGCTTGATCTATACCATCTGTTTCATGTTCTTCAGGAACTGAGG CTAGTTCAGGTGATTTTTCTGTTACCGACTTTTTCTGAGGTGAGGGGGGT GCACCTGTTAAACGTCTTGTTTTATCCATCACGCTTTGACGAACATTTCC AAGCATGTTCATGCCTTGTTCCGCTTTTGACTTGGCTTGATCAGCTAAAT GATGTAACATGGAGGTGACGAGACCGAGAATAATGGTCAACGCTGACAAG CCGAGTAAGAAGTAAAGTAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045139XLOC_045139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072728-exon-scaffold_82-1575043694:263520..263562TCONS_00072728-exon-scaffold_82-1575043694:263520..263562Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:261340..261394TCONS_00072728-exon-scaffold_82-1575043694:261340..261394Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:260788..260882TCONS_00072728-exon-scaffold_82-1575043694:260788..260882Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:260532..260609TCONS_00072728-exon-scaffold_82-1575043694:260532..260609Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:259988..260073TCONS_00072728-exon-scaffold_82-1575043694:259988..260073Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:257812..257871TCONS_00072728-exon-scaffold_82-1575043694:257812..257871Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:257453..257529TCONS_00072728-exon-scaffold_82-1575043694:257453..257529Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:257236..257290TCONS_00072728-exon-scaffold_82-1575043694:257236..257290Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1575043694:255391..256479TCONS_00072728-exon-scaffold_82-1575043694:255391..256479Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:263520..263562TCONS_00072728-exon-scaffold_82-1510915933:263520..263562Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:261340..261394TCONS_00072728-exon-scaffold_82-1510915933:261340..261394Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:260788..260882TCONS_00072728-exon-scaffold_82-1510915933:260788..260882Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:260532..260609TCONS_00072728-exon-scaffold_82-1510915933:260532..260609Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:259988..260073TCONS_00072728-exon-scaffold_82-1510915933:259988..260073Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:257812..257871TCONS_00072728-exon-scaffold_82-1510915933:257812..257871Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:257453..257529TCONS_00072728-exon-scaffold_82-1510915933:257453..257529Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:257236..257290TCONS_00072728-exon-scaffold_82-1510915933:257236..257290Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1510915933:255391..256479TCONS_00072728-exon-scaffold_82-1510915933:255391..256479Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:263520..263562TCONS_00072728-exon-scaffold_82-1491911889:263520..263562Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:261340..261394TCONS_00072728-exon-scaffold_82-1491911889:261340..261394Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:260788..260882TCONS_00072728-exon-scaffold_82-1491911889:260788..260882Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:260532..260609TCONS_00072728-exon-scaffold_82-1491911889:260532..260609Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:259988..260073TCONS_00072728-exon-scaffold_82-1491911889:259988..260073Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:257812..257871TCONS_00072728-exon-scaffold_82-1491911889:257812..257871Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:257453..257529TCONS_00072728-exon-scaffold_82-1491911889:257453..257529Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:257236..257290TCONS_00072728-exon-scaffold_82-1491911889:257236..257290Clytia hemisphaericaexon
TCONS_00072728-exon-scaffold_82-1491911889:255391..256479TCONS_00072728-exon-scaffold_82-1491911889:255391..256479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:255391..263562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9841 11.9273 6.9497 8.13462 9.23735 7.21642 34.1006 34.0322 4.70496 5.2114 2.04512 3.09627 4.96743 4.45446 2.25332 2.89101 2.36948 2.03768 0.611387 2.08012 4.30637 1.67426 4.64689 5.14648 13.8766 15.2345 3.07121 1.89534 3.40909 2.85008
Blast
BLAST of TCONS_00072728 vs. Swiss-Prot (Human)
Match: SRPRB (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.404e-49
Identity = 99/215 (46.05%), Postives = 137/215 (63.72%), Query Frame = 2
Query:  119 RSSKSGD-SVILLGLCDSGKTSLFGQLTTGKELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNARGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPTAKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFSHVNPIKVEFCECNLKNTQVE-GEVKVDGVRTWLEK 757
            RS +S   +V+L+GLCDSGKT LF +L TG    TQTSI ++   +       G    LID+PGHE +R ++    K +AR I+F++DS  F RE++DVAE +Y +L +    +N  S ++ACNKQDI  AKS  +I+ QLEKELN LR TRSAA   +D  SS+  A +GK+GK+FEFS + P+KVEF EC+ K  + + G   +  +  WL K
Sbjct:   58 RSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCA-VYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS-SSTAPAQLGKKGKEFEFSQL-PLKVEFLECSAKGGRGDVGSADIQDLEKWLAK 269          
The following BLAST results are available for this feature:
BLAST of TCONS_00072728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRPRB1.404e-4946.05Signal recognition particle receptor subunit beta ... [more]
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