TCONS_00072717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072717
Unique NameTCONS_00072717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072717 ID=TCONS_00072717|Name=TCONS_00072717|organism=Clytia hemisphaerica|type=transcript|length=949bp
gTAAACGAAAATGAATAATGCAAAGGAGGTTGGGACTGAGCCAACACGAT
GTTAATGAACTGAAAAATGAATAGACATCAATAGAGTGGGGCTCAGGCCC
TCGAGCTCAGACCTCTGAATAGGGCGAGAGATTATGAGtgagaaaaggaa
agaaatcagGGACTTGAAAGGGAGAACTTGAAGGAGAAGGACTTGAACAG
AGACTATCGTTAATTATATGCCAGAGTTACTAATTTATTTGATGcttatt
tgatatttattgcTTAATTGGAGAAACAGAATTGATGTTGATTGAAATCT
ATTAGCGTACCTTTACTACGTGCCCATAGACTTATCCCCAATAAGGGATA
CCCTGATCGAAGGAACAGATAAGTGATCTGAGAGGTCCCCTCAATAACTA
AAGGGTGACCCCAATCGCCTAACTTCCCTTCGTCACAATATCTAAAACTG
TCATATGAACCAAAACTGTAAATGGTTCTCCAATTCAGAGATCTCGACAA
ACTATCTTATTCTTCCTTAATTTctattttgacagaaaacctGAAATACG
ATGTTACGCCATTGACTGAGGTCATCGAATTTCTGAAaaacaaatttcca
gaaaacttGAGTTCGGCCTGCGTCACGATCGCGGCCTCTATCCTGTTGTG
GAGTTATCCCAAACTAAAAGAAATCACCCCAAACAAGTTGGCAGTGCCAC
TTCTATATGgatgaaaaatgaaggaaaaaagAAGCACTTTTTAATGGGAA
CctaagattttaaatatttaattttctgaGTATTTGAATTTTAAGATCAA
AAGTTTCATTCCCTGGCTGTCTATCGAAATTTTGTTACTAATGCCAAGAA
GGATGTGAAAAACCTAAACGCACATATGATGGCTACATTCACTTTCAGTG
AAAAATCGAGTTGCTTATAAGGAAATAAAGAAATGTGTACGCGTGCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_82:234747..236862-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072717 ID=TCONS_00072717|Name=TCONS_00072717|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at scaffold_82:234747..236862- (Clytia hemisphaerica)
GTAAACGAAAATGAATAATGCAAAGGAGGTTGGGACTGAGCCAACACGAT
GTTAATGAACTGAAAAATGAATAGACATCAATAGAGTGGGGCTCAGGCCC
TCGAGCTCAGACCTCTGAATAGGGCGAGAGATTATGAGTGAGAAAAGGAA
AGAAATCAGGGACTTGAAAGGGAGAACTTGAAGGAGAAGGACTTGAACAG
AGACTATCGTTAATTATATGCCAGAGTTACTAATTTATTTGATGCTTATT
TGATATTTATTGCTTAATTGGAGAAACAGAATTGATGTTGATTGAAATCT
ATTAGCGTACCTTTACTACGTGCCCATAGACTTATCCCCAATAAGGGATA
CCCTGATCGAAGGAACAGATAAGTGATCTGAGAGGTCCCCTCAATAACTA
AAGGGTGACCCCAATCGCCTAACTTCCCTTCGTCACAATATCTAAAACTG
TCATATGAACCAAAACTGTAAATGGTTCTCCAATTCAGAGATCTCGACAA
ACTATCTTATTCTTCCTTAATTTCTATTTTGACAGAAAACCTGAAATACG
ATGTTACGCCATTGACTGAGGTCATCCTCTTTCTAAAAAACAAATTCCCA
GAAAATTTAAGTTCGGCCTGCATTACGATCGCGGCCTCCATCCTGCTGTC
GAGTTATCCCAAACTAAAAGAAATCGCCCCAAACAAGTTGGCAGTGCCAC
GTCTAAATGGGCTACCCAGCACTCAAAAGAGTACCGTTGCTCGTTGCTGA
GTTGGAACTGGCGATGGTTGGTGTTCAATTAAAAAGCCAAGTTATGTTTA
TTAATTATTAATTAGTTATCATATTTATAATATTTAAAACTATCATTTGA
ACCAAAACTGTAAATGGTTCTCCAATTCAGAGATCTCGACAAACTATCTA
ATTCTTCCTTAATTTCTATTTTGAAAGAAAACCTGAAATACGATGTTACG
CCATTGACTGAGGTCATCCTCTTTCTAAAAACCAAATTTCCAGAAAATTT
GAGTTCGGCCTGCGTCACGATCGCGGCCTCCATCCTGCTGTCGAGTTATC
CTAAACTAAAAGAAATCACCCAAACAAGTTGACAGTGTCACTTCTAAATG
GGCTACCCAGCACTCAAAAGAGTACCGTTGCTCGTTGCTGAGTTGGAACT
GGCGATAGTTGGTGTTCAATTAAAAAGCCAAGTTATGTTTATTAATTAGT
TATCATATTTATAATATTTAAAACTATCATTTGAACCAAAACTGTAAATG
GTTCTCCAATTCAGAGATCTCGACAAACTATCTAATTCTTCCTTAATTTC
TACTTTGACAGAAAACCTAAAATACGATGTTACGCCATTGACTGAGGTCA
TCCTCTTTCTAAAAACCAAATTTCCAGAAAATTTGAGTTCGGCCTGCATC
ACGATCGCGGCCTCCATCCTGCTGTCGAGTTATCCTAAACTAAAAGAAAT
CACCCAAACAAGTTGGCAGTGCCACTTCTAAATGGGCTACCCAGCACTCA
AAAGAGTACCGTTGCTCGTTGTTGAGTTGGAACTGGCGATAGTTGGTGTT
CAATTAAAAAGCCAAGTTATGTTTATTAATTATTAATTAGTTATCATATT
TATCATATTTAAAACTATCATTTGAACCAAAACGGTAAATGGTTCTCCAA
TTCAGAGATCTCGACAAATTATCTTATTCTTCCTTAATTTCTACTTTGAC
AGAAAACCTGAAATACGATGTTACGCCATTGACTGAGGTCATCGAATTTC
TGAAAAACAAATTTCCAGAAAACTTGAGTTCGGCCTGCGTCACGATCGCG
GCCTCTATCCTGTTGTGGAGTTATCCCAAACTAAAAGAAATCACCCCAAA
CAAGTTGGCAGTGCCACTTCTATATGGATGAAAAATGAAGGAAAAAAGAA
GCACTTTTTAATGGGAACCTAAGATTTTAAATATTTAATTTTCTGAGTAT
TTGAATTTTAAGATCAAAAGTTTCATTCCCTGGCTGTCTATCGAAATTTT
GTTACTAATGCCAAGAAGGATGTGAAAAACCTAAACGCACATATGATGGC
TACATTCACTTTCAGTGAAAAATCGAGTTGCTTATAAGGAAATAAAGAAA
TGTGTACGCGTGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045137XLOC_045137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072717-exon-scaffold_82-1575043694:236293..236862TCONS_00072717-exon-scaffold_82-1575043694:236293..236862Clytia hemisphaericaexon
TCONS_00072717-exon-scaffold_82-1575043694:234747..235125TCONS_00072717-exon-scaffold_82-1575043694:234747..235125Clytia hemisphaericaexon
TCONS_00072717-exon-scaffold_82-1510915933:236293..236862TCONS_00072717-exon-scaffold_82-1510915933:236293..236862Clytia hemisphaericaexon
TCONS_00072717-exon-scaffold_82-1510915933:234747..235125TCONS_00072717-exon-scaffold_82-1510915933:234747..235125Clytia hemisphaericaexon
TCONS_00072717-exon-scaffold_82-1491911889:236293..236862TCONS_00072717-exon-scaffold_82-1491911889:236293..236862Clytia hemisphaericaexon
TCONS_00072717-exon-scaffold_82-1491911889:234747..235125TCONS_00072717-exon-scaffold_82-1491911889:234747..235125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:234747..236862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.442403	0.489939	0.61912	0.183504	0	0	0	0	0	0.494943	0.342673	0.193962	1.85894	2.32043	1.77399	1.82602	1.84589	0.812886	2.70531	2.28392	1.27902	0.271512	0.261391	0.521615	0	0	0.654961	0.249691	0.127662	0.236608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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